Wall clock time and date at job start Wed Apr 1 2020 04:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46945 * 2 1 4 4 C 1.50701 * 109.47136 * 119.99324 * 2 1 3 5 5 O 1.21282 * 119.99719 * 120.00223 * 4 2 1 6 6 N 1.34774 * 120.00339 * 300.00669 * 4 2 1 7 7 C 1.46498 * 119.99900 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47091 * 180.02562 * 7 6 4 9 9 C 1.53519 * 111.15655 * 299.11109 * 8 7 6 10 10 C 1.54186 * 106.59073 * 240.87922 * 9 8 7 11 11 C 1.54742 * 104.34405 * 335.43469 * 10 9 8 12 12 C 1.54665 * 111.22966 * 180.02562 * 8 7 6 13 13 H 1.08997 * 112.40353 * 19.48786 * 12 8 7 14 14 N 1.47257 * 106.10103 * 256.40333 * 12 8 7 15 15 C 1.36941 * 126.51802 * 150.03691 * 14 12 8 16 16 H 1.08002 * 119.99840 * 0.02562 * 15 14 12 17 17 C 1.38817 * 119.99989 * 179.97438 * 15 14 12 18 18 N 1.31614 * 119.99502 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99827 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47195 * 60.00542 * 19 17 15 21 21 H 1.48500 * 109.46611 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47244 * 299.99878 * 19 17 15 23 23 C 1.47152 * 106.96214 * 330.07480 * 14 12 8 24 24 C 1.53669 * 111.17519 * 62.59954 * 8 7 6 25 25 C 1.50697 * 109.47733 * 240.00083 * 2 1 3 26 26 C 1.35316 * 126.12346 * 275.00298 * 25 2 1 27 27 C 1.39873 * 107.91987 * 179.97438 * 26 25 2 28 28 N 1.30832 * 108.20166 * 0.02562 * 27 26 25 29 29 N 1.34943 * 126.13122 * 94.99593 * 25 2 1 30 30 C 1.46500 * 126.03414 * 0.26478 * 29 25 2 31 31 H 1.09000 * 109.46974 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47549 * 300.00099 * 1 2 3 33 33 H 1.08999 * 109.46969 * 60.00259 * 1 2 3 34 34 H 0.96996 * 119.99767 * 359.97438 * 6 4 2 35 35 H 1.09002 * 109.47340 * 299.99540 * 7 6 4 36 36 H 1.08993 * 109.47278 * 60.00114 * 7 6 4 37 37 H 1.09003 * 110.03500 * 0.98661 * 9 8 7 38 38 H 1.08999 * 110.04019 * 122.43556 * 9 8 7 39 39 H 1.09000 * 110.79818 * 216.50179 * 10 9 8 40 40 H 1.08994 * 109.99305 * 93.96267 * 10 9 8 41 41 H 1.08999 * 110.65022 * 278.61650 * 11 10 9 42 42 H 1.09004 * 110.78768 * 155.60594 * 11 10 9 43 43 H 0.96999 * 119.99576 * 179.97438 * 18 17 15 44 44 H 1.08996 * 110.09323 * 150.06735 * 23 14 12 45 45 H 1.09008 * 110.08894 * 271.65658 * 23 14 12 46 46 H 1.09003 * 110.22870 * 241.06681 * 24 8 7 47 47 H 1.09004 * 110.23327 * 3.02119 * 24 8 7 48 48 H 1.07997 * 126.04396 * 0.02562 * 26 25 2 49 49 H 1.07998 * 125.89584 * 180.02562 * 27 26 25 50 50 H 1.08997 * 109.47763 * 269.71272 * 30 29 25 51 51 H 1.09004 * 109.47211 * 29.71722 * 30 29 25 52 52 H 1.09012 * 109.46942 * 149.71408 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7296 -1.6963 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1946 -0.9407 3.6508 8 6 1.6841 -0.2197 4.9000 9 6 2.1923 1.2280 4.9508 10 6 3.0328 1.3547 6.2372 11 6 2.4824 0.2458 7.1655 12 6 2.1771 -0.9167 6.1897 13 1 3.0416 -1.5563 6.0117 14 7 1.0246 -1.6689 6.7136 15 6 1.0704 -2.8300 7.4381 16 1 2.0226 -3.2804 7.6766 17 6 -0.1069 -3.4275 7.8670 18 7 -1.2672 -2.8782 7.5768 19 14 -0.0443 -5.0109 8.8560 20 1 0.7190 -4.7820 10.1091 21 1 -1.4259 -5.4414 9.1890 22 1 0.6237 -6.0683 8.0555 23 6 -0.1858 -0.9359 6.3096 24 6 0.1494 -0.2530 4.9719 25 6 2.0325 -0.7103 -1.2304 26 6 2.2086 -2.0452 -1.3648 27 6 2.6870 -2.2883 -2.6565 28 7 2.7948 -1.1405 -3.2751 29 7 2.3873 -0.1293 -2.3955 30 6 2.3573 1.3061 -2.6869 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.1493 0.5390 2.5435 35 1 1.8309 -1.9682 3.6507 36 1 3.2845 -0.9410 3.6510 37 1 2.7991 1.4419 4.0709 38 1 1.3499 1.9180 5.0008 39 1 2.8978 2.3357 6.6927 40 1 4.0849 1.1780 6.0138 41 1 1.5721 0.5786 7.6642 42 1 3.2326 -0.0537 7.8975 43 1 -2.0899 -3.2958 7.8761 44 1 -1.0169 -1.6289 6.1785 45 1 -0.4374 -0.1862 7.0599 46 1 -0.2507 0.7608 4.9552 47 1 -0.2544 -0.8321 4.1414 48 1 2.0134 -2.7913 -0.6088 49 1 2.9261 -3.2563 -3.0715 50 1 1.3855 1.5724 -3.1025 51 1 2.5254 1.8671 -1.7676 52 1 3.1389 1.5470 -3.4076 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107410839.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:39 Heat of formation + Delta-G solvation = 64.519684 kcal Electronic energy + Delta-G solvation = -31550.052303 eV Core-core repulsion = 27551.721968 eV Total energy + Delta-G solvation = -3998.330334 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.49192 -40.03521 -38.96530 -34.80978 -34.45832 -33.89359 -33.11363 -31.60814 -30.36068 -29.16667 -27.94612 -26.86497 -26.83510 -25.17110 -23.96675 -23.62040 -21.42153 -20.94892 -20.50411 -19.78962 -19.47675 -18.25562 -17.24423 -17.10089 -16.65306 -15.73790 -15.57148 -15.20785 -14.97869 -14.56998 -14.47482 -14.28550 -13.81336 -13.66081 -13.62404 -13.42499 -13.35183 -13.07200 -12.84019 -12.58852 -12.57047 -12.41804 -12.20844 -11.87261 -11.66845 -11.53707 -11.22525 -10.99909 -10.80219 -10.70472 -10.66787 -10.54517 -10.29693 -10.11240 -10.05956 -9.94060 -9.65193 -9.59244 -9.50617 -9.34354 -8.87466 -8.66986 -8.47422 -6.88612 -5.64477 -3.09519 1.74639 2.32975 2.64908 2.85195 3.27602 3.40348 3.44943 3.45613 4.14260 4.37435 4.47193 4.52060 4.74959 4.78881 4.90899 4.93957 4.99888 5.04447 5.06490 5.13401 5.31268 5.38363 5.48304 5.53877 5.60213 5.66743 5.73307 5.80129 5.82745 5.88965 5.92487 6.04300 6.07555 6.11574 6.16244 6.24000 6.29501 6.39028 6.42761 6.46461 6.64394 6.67250 6.68154 6.77397 6.87547 6.90365 7.06171 7.49039 7.56361 7.61775 7.63667 7.84970 8.26661 8.40693 9.20848 9.81766 10.48268 11.35758 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014206 B = 0.002678 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.459240 B =10454.693304 C =11467.955114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.046 4.046 3 H 0.102 0.898 4 C 0.517 3.483 5 O -0.524 6.524 6 N -0.718 5.718 7 C 0.143 3.857 8 C -0.086 4.086 9 C -0.111 4.111 10 C -0.122 4.122 11 C -0.136 4.136 12 C 0.168 3.832 13 H 0.064 0.936 14 N -0.588 5.588 15 C -0.219 4.219 16 H 0.077 0.923 17 C -0.011 4.011 18 N -0.921 5.921 19 Si 0.914 3.086 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.137 3.863 24 C -0.129 4.129 25 C 0.087 3.913 26 C -0.226 4.226 27 C 0.040 3.960 28 N -0.300 5.300 29 N -0.376 5.376 30 C 0.100 3.900 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.398 0.602 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.252 0.748 44 H 0.121 0.879 45 H 0.005 0.995 46 H 0.053 0.947 47 H 0.056 0.944 48 H 0.155 0.845 49 H 0.182 0.818 50 H 0.073 0.927 51 H 0.083 0.917 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.122 12.368 -15.969 20.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.069 4.069 3 H 0.120 0.880 4 C 0.301 3.699 5 O -0.400 6.400 6 N -0.370 5.370 7 C 0.020 3.980 8 C -0.088 4.088 9 C -0.149 4.149 10 C -0.161 4.161 11 C -0.176 4.176 12 C 0.059 3.941 13 H 0.082 0.918 14 N -0.308 5.308 15 C -0.347 4.347 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.570 5.570 19 Si 0.745 3.255 20 H -0.213 1.213 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.012 3.988 24 C -0.168 4.168 25 C -0.040 4.040 26 C -0.255 4.255 27 C -0.145 4.145 28 N -0.122 5.122 29 N -0.160 5.160 30 C -0.042 4.042 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.233 0.767 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.138 0.862 45 H 0.023 0.977 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.173 0.827 49 H 0.199 0.801 50 H 0.092 0.908 51 H 0.102 0.898 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.780 12.163 -17.032 21.468 hybrid contribution -0.410 -0.609 1.374 1.558 sum 4.370 11.555 -15.658 19.945 Atomic orbital electron populations 1.21777 0.90997 1.04018 1.02969 1.19782 0.98035 0.99550 0.89532 0.87970 1.19990 0.80780 0.84908 0.84237 1.90744 1.37273 1.25666 1.86269 1.45990 1.53443 1.32016 1.05508 1.21394 0.98224 0.96493 0.81881 1.22019 0.97129 0.94621 0.95074 1.22212 0.99354 0.95589 0.97713 1.22262 0.98827 0.98928 0.96041 1.23025 1.00457 0.96003 0.98092 1.21665 0.91667 0.91216 0.89568 0.91751 1.44554 1.00113 1.24568 1.61580 1.19057 0.92961 0.97636 1.25089 0.90488 1.24757 0.95226 0.99328 1.01290 1.69613 0.96721 1.40013 1.50641 0.86156 0.76556 0.83022 0.79809 1.21264 1.21622 1.21123 1.21866 0.93043 0.94836 0.89104 1.22710 0.92759 0.99696 1.01672 1.20265 1.02009 0.93636 0.88088 1.21460 1.10901 0.95061 0.98035 1.23880 0.99768 0.96986 0.93906 1.77315 1.22715 0.95838 1.16320 1.48374 1.51617 1.06661 1.09368 1.21805 1.03644 0.75717 1.02997 0.91019 0.90874 0.91527 0.76727 0.90761 0.91936 0.92421 0.92014 0.92570 0.92490 0.91257 0.92669 0.93682 0.86196 0.97700 0.92871 0.92563 0.82718 0.80087 0.90831 0.89836 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.07 37.16 0.34 -0.77 16 2 C -0.05 -0.44 2.92 -92.92 -0.27 -0.71 16 3 H 0.10 0.71 6.94 -51.92 -0.36 0.35 16 4 C 0.52 6.69 7.08 -10.99 -0.08 6.62 16 5 O -0.52 -8.91 13.74 5.56 0.08 -8.83 16 6 N -0.72 -8.60 4.73 -60.30 -0.29 -8.89 16 7 C 0.14 2.16 4.27 -4.04 -0.02 2.15 16 8 C -0.09 -1.34 0.65 -153.01 -0.10 -1.44 16 9 C -0.11 -1.41 5.62 -25.84 -0.15 -1.56 16 10 C -0.12 -1.65 6.83 -25.19 -0.17 -1.82 16 11 C -0.14 -2.35 6.37 -24.86 -0.16 -2.51 16 12 C 0.17 3.23 3.59 -65.68 -0.24 3.00 16 13 H 0.06 1.26 7.95 -51.93 -0.41 0.85 16 14 N -0.59 -14.07 2.98 -161.96 -0.48 -14.55 16 15 C -0.22 -5.88 10.33 -15.06 -0.16 -6.03 16 16 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 18 N -0.92 -26.06 10.06 55.49 0.56 -25.50 16 19 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.14 3.12 5.68 -3.22 -0.02 3.10 16 24 C -0.13 -2.21 5.82 -25.92 -0.15 -2.36 16 25 C 0.09 1.04 5.73 -82.27 -0.47 0.57 16 26 C -0.23 -3.06 9.14 -40.01 -0.37 -3.43 16 27 C 0.04 0.50 12.03 -17.37 -0.21 0.29 16 28 N -0.30 -4.00 12.58 30.62 0.39 -3.61 16 29 N -0.38 -4.29 4.01 -63.88 -0.26 -4.55 16 30 C 0.10 0.67 11.27 59.85 0.67 1.34 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.48 7.57 -51.93 -0.39 0.08 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.40 3.79 7.28 -40.82 -0.30 3.49 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.65 7.47 -51.93 -0.39 0.26 16 38 H 0.06 0.74 7.10 -51.93 -0.37 0.37 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.34 7.28 -51.93 -0.38 0.96 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.12 3.16 5.45 -51.93 -0.28 2.87 16 45 H 0.01 0.12 7.71 -51.92 -0.40 -0.28 16 46 H 0.05 0.79 7.11 -51.93 -0.37 0.42 16 47 H 0.06 0.96 7.62 -51.93 -0.40 0.57 16 48 H 0.16 2.26 6.80 -52.49 -0.36 1.90 16 49 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 50 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 51 H 0.08 0.38 6.97 -51.93 -0.36 0.02 16 52 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 LS Contribution 401.58 15.07 6.05 6.05 Total: -1.00 -32.89 401.58 -9.15 -42.03 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -8.54 Total: 5.04 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -1.63 Total: -3.95 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.08 Total: -57.10 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.08 Total: -8.83 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.89 -9.15 -42.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107410839.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.555 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds