Wall clock time and date at job start Wed Apr 1 2020 04:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46945 * 2 1 4 4 C 1.50701 * 109.47136 * 119.99324 * 2 1 3 5 5 O 1.21282 * 119.99719 * 120.00223 * 4 2 1 6 6 N 1.34774 * 120.00339 * 300.00669 * 4 2 1 7 7 C 1.46498 * 119.99900 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47091 * 180.02562 * 7 6 4 9 9 C 1.53519 * 111.15655 * 299.11109 * 8 7 6 10 10 C 1.54186 * 106.59073 * 240.87922 * 9 8 7 11 11 C 1.54742 * 104.34405 * 335.43469 * 10 9 8 12 12 C 1.54665 * 111.22966 * 180.02562 * 8 7 6 13 13 H 1.08997 * 112.40353 * 19.48786 * 12 8 7 14 14 N 1.47257 * 106.10103 * 256.40333 * 12 8 7 15 15 C 1.36941 * 126.51802 * 150.03691 * 14 12 8 16 16 H 1.08002 * 119.99840 * 0.02562 * 15 14 12 17 17 C 1.38817 * 119.99989 * 179.97438 * 15 14 12 18 18 N 1.31614 * 119.99502 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99827 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47195 * 60.00542 * 19 17 15 21 21 H 1.48500 * 109.46611 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47244 * 299.99878 * 19 17 15 23 23 C 1.47152 * 106.96214 * 330.07480 * 14 12 8 24 24 C 1.53669 * 111.17519 * 62.59954 * 8 7 6 25 25 C 1.50697 * 109.47733 * 240.00083 * 2 1 3 26 26 C 1.35316 * 126.12346 * 275.00298 * 25 2 1 27 27 C 1.39873 * 107.91987 * 179.97438 * 26 25 2 28 28 N 1.30832 * 108.20166 * 0.02562 * 27 26 25 29 29 N 1.34943 * 126.13122 * 94.99593 * 25 2 1 30 30 C 1.46500 * 126.03414 * 0.26478 * 29 25 2 31 31 H 1.09000 * 109.46974 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47549 * 300.00099 * 1 2 3 33 33 H 1.08999 * 109.46969 * 60.00259 * 1 2 3 34 34 H 0.96996 * 119.99767 * 359.97438 * 6 4 2 35 35 H 1.09002 * 109.47340 * 299.99540 * 7 6 4 36 36 H 1.08993 * 109.47278 * 60.00114 * 7 6 4 37 37 H 1.09003 * 110.03500 * 0.98661 * 9 8 7 38 38 H 1.08999 * 110.04019 * 122.43556 * 9 8 7 39 39 H 1.09000 * 110.79818 * 216.50179 * 10 9 8 40 40 H 1.08994 * 109.99305 * 93.96267 * 10 9 8 41 41 H 1.08999 * 110.65022 * 278.61650 * 11 10 9 42 42 H 1.09004 * 110.78768 * 155.60594 * 11 10 9 43 43 H 0.96999 * 119.99576 * 179.97438 * 18 17 15 44 44 H 1.08996 * 110.09323 * 150.06735 * 23 14 12 45 45 H 1.09008 * 110.08894 * 271.65658 * 23 14 12 46 46 H 1.09003 * 110.22870 * 241.06681 * 24 8 7 47 47 H 1.09004 * 110.23327 * 3.02119 * 24 8 7 48 48 H 1.07997 * 126.04396 * 0.02562 * 26 25 2 49 49 H 1.07998 * 125.89584 * 180.02562 * 27 26 25 50 50 H 1.08997 * 109.47763 * 269.71272 * 30 29 25 51 51 H 1.09004 * 109.47211 * 29.71722 * 30 29 25 52 52 H 1.09012 * 109.46942 * 149.71408 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7296 -1.6963 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1946 -0.9407 3.6508 8 6 1.6841 -0.2197 4.9000 9 6 2.1923 1.2280 4.9508 10 6 3.0328 1.3547 6.2372 11 6 2.4824 0.2458 7.1655 12 6 2.1771 -0.9167 6.1897 13 1 3.0416 -1.5563 6.0117 14 7 1.0246 -1.6689 6.7136 15 6 1.0704 -2.8300 7.4381 16 1 2.0226 -3.2804 7.6766 17 6 -0.1069 -3.4275 7.8670 18 7 -1.2672 -2.8782 7.5768 19 14 -0.0443 -5.0109 8.8560 20 1 0.7190 -4.7820 10.1091 21 1 -1.4259 -5.4414 9.1890 22 1 0.6237 -6.0683 8.0555 23 6 -0.1858 -0.9359 6.3096 24 6 0.1494 -0.2530 4.9719 25 6 2.0325 -0.7103 -1.2304 26 6 2.2086 -2.0452 -1.3648 27 6 2.6870 -2.2883 -2.6565 28 7 2.7948 -1.1405 -3.2751 29 7 2.3873 -0.1293 -2.3955 30 6 2.3573 1.3061 -2.6869 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.1493 0.5390 2.5435 35 1 1.8309 -1.9682 3.6507 36 1 3.2845 -0.9410 3.6510 37 1 2.7991 1.4419 4.0709 38 1 1.3499 1.9180 5.0008 39 1 2.8978 2.3357 6.6927 40 1 4.0849 1.1780 6.0138 41 1 1.5721 0.5786 7.6642 42 1 3.2326 -0.0537 7.8975 43 1 -2.0899 -3.2958 7.8761 44 1 -1.0169 -1.6289 6.1785 45 1 -0.4374 -0.1862 7.0599 46 1 -0.2507 0.7608 4.9552 47 1 -0.2544 -0.8321 4.1414 48 1 2.0134 -2.7913 -0.6088 49 1 2.9261 -3.2563 -3.0715 50 1 1.3855 1.5724 -3.1025 51 1 2.5254 1.8671 -1.7676 52 1 3.1389 1.5470 -3.4076 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107410839.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:37 Heat of formation + Delta-G solvation = 43.693892 kcal Electronic energy + Delta-G solvation = -31550.955377 eV Core-core repulsion = 27551.721968 eV Total energy + Delta-G solvation = -3999.233409 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.38646 -41.29017 -40.17622 -36.29425 -35.46471 -35.14076 -33.86474 -33.31065 -31.90234 -30.15949 -29.25428 -28.42692 -27.53882 -26.17048 -25.56405 -24.88596 -22.40761 -22.09291 -21.91678 -21.06535 -20.51421 -19.59040 -18.92206 -17.98941 -17.80398 -16.91727 -16.72654 -16.43449 -16.23444 -15.87736 -15.56949 -15.37274 -15.20000 -15.06920 -14.68390 -14.53398 -14.35534 -14.05761 -13.97967 -13.64884 -13.53182 -13.35273 -13.23565 -13.10406 -13.03988 -12.80923 -12.79416 -12.49510 -12.27957 -12.12942 -12.00612 -11.81882 -11.65275 -11.56658 -11.53810 -11.39173 -11.29702 -11.01416 -10.75508 -10.66372 -10.20924 -10.01304 -9.38991 -8.83509 -7.71046 -5.17085 0.85779 1.45852 1.48139 1.54003 1.54813 1.67191 1.89346 2.28737 2.50798 3.32491 3.33566 3.55626 3.69908 3.75305 3.77450 3.82821 4.00586 4.08005 4.10830 4.36577 4.36696 4.43074 4.47428 4.51705 4.59150 4.67557 4.68862 4.70045 4.70688 4.75856 4.84379 4.88521 4.89835 4.94488 4.99647 5.11103 5.18706 5.21447 5.22419 5.29649 5.31780 5.43352 5.49889 5.51835 5.56252 5.62297 5.74035 5.74545 5.92834 6.11303 6.43679 6.60884 6.73054 7.16230 7.29767 7.84748 8.50500 9.26238 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014206 B = 0.002678 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.459240 B =10454.693304 C =11467.955114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.034 4.034 3 H 0.144 0.856 4 C 0.515 3.485 5 O -0.570 6.570 6 N -0.703 5.703 7 C 0.156 3.844 8 C -0.071 4.071 9 C -0.102 4.102 10 C -0.112 4.112 11 C -0.132 4.132 12 C 0.153 3.847 13 H 0.053 0.947 14 N -0.610 5.610 15 C -0.229 4.229 16 H 0.075 0.925 17 C -0.066 4.066 18 N -0.945 5.945 19 Si 0.972 3.028 20 H -0.280 1.280 21 H -0.294 1.294 22 H -0.281 1.281 23 C 0.139 3.861 24 C -0.115 4.115 25 C 0.090 3.910 26 C -0.260 4.260 27 C 0.031 3.969 28 N -0.326 5.326 29 N -0.373 5.373 30 C 0.086 3.914 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.416 0.584 35 H 0.032 0.968 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.047 0.953 43 H 0.245 0.755 44 H 0.082 0.918 45 H -0.017 1.017 46 H 0.088 0.912 47 H 0.054 0.946 48 H 0.133 0.867 49 H 0.200 0.800 50 H 0.093 0.907 51 H 0.112 0.888 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.756 15.964 -17.405 24.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.057 4.057 3 H 0.162 0.838 4 C 0.300 3.700 5 O -0.449 6.449 6 N -0.355 5.355 7 C 0.032 3.968 8 C -0.073 4.073 9 C -0.139 4.139 10 C -0.150 4.150 11 C -0.172 4.172 12 C 0.045 3.955 13 H 0.072 0.928 14 N -0.331 5.331 15 C -0.359 4.359 16 H 0.093 0.907 17 C -0.259 4.259 18 N -0.595 5.595 19 Si 0.801 3.199 20 H -0.207 1.207 21 H -0.220 1.220 22 H -0.208 1.208 23 C 0.013 3.987 24 C -0.153 4.153 25 C -0.039 4.039 26 C -0.289 4.289 27 C -0.153 4.153 28 N -0.149 5.149 29 N -0.156 5.156 30 C -0.054 4.054 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.254 0.746 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.100 0.900 45 H 0.001 0.999 46 H 0.106 0.894 47 H 0.073 0.927 48 H 0.151 0.849 49 H 0.216 0.784 50 H 0.112 0.888 51 H 0.130 0.870 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.429 15.826 -18.496 24.941 hybrid contribution -0.569 -1.736 1.845 2.596 sum 4.860 14.090 -16.651 22.347 Atomic orbital electron populations 1.21808 0.89389 1.03205 1.05084 1.19842 0.99025 1.00562 0.86287 0.83840 1.20624 0.79830 0.84313 0.85202 1.90746 1.39414 1.27786 1.86934 1.45740 1.53339 1.32157 1.04294 1.21019 0.98017 0.94707 0.83086 1.21846 0.95790 0.96537 0.93117 1.22200 1.00341 0.92984 0.98419 1.22226 0.99477 0.98127 0.95181 1.22867 0.99412 0.96737 0.98164 1.21987 0.90083 0.91540 0.91919 0.92849 1.44782 1.02208 1.24448 1.61677 1.19372 0.92895 0.98706 1.24888 0.90696 1.25494 0.95133 1.02270 1.02972 1.69888 0.96839 1.41041 1.51762 0.85234 0.76168 0.79816 0.78636 1.20653 1.21966 1.20776 1.21645 0.91877 0.93640 0.91510 1.22559 0.94027 1.00842 0.97918 1.20553 1.00921 0.93373 0.89040 1.21454 1.13228 0.95962 0.98267 1.24197 0.99535 0.97874 0.93662 1.77249 1.23771 0.96434 1.17397 1.48725 1.50278 1.07981 1.08650 1.22268 1.05087 0.73171 1.04869 0.93368 0.88726 0.89437 0.74643 0.94908 0.91972 0.89613 0.89952 0.90411 0.91149 0.93646 0.93402 0.94485 0.90014 0.99909 0.89359 0.92677 0.84904 0.78358 0.88831 0.87000 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.07 71.98 0.65 -1.04 16 2 C -0.03 -0.55 2.92 -12.29 -0.04 -0.58 16 3 H 0.14 1.15 6.94 -2.38 -0.02 1.13 16 4 C 0.51 12.39 7.08 87.66 0.62 13.01 16 5 O -0.57 -19.54 13.74 -3.04 -0.04 -19.58 16 6 N -0.70 -14.89 4.73 -463.07 -2.19 -17.08 16 7 C 0.16 4.55 4.27 86.38 0.37 4.92 16 8 C -0.07 -2.08 0.65 -51.21 -0.03 -2.11 16 9 C -0.10 -2.11 5.62 31.17 0.18 -1.94 16 10 C -0.11 -2.60 6.83 31.59 0.22 -2.38 16 11 C -0.13 -4.45 6.37 31.81 0.20 -4.25 16 12 C 0.15 5.88 3.59 46.04 0.17 6.04 16 13 H 0.05 2.14 7.95 -2.39 -0.02 2.12 16 14 N -0.61 -30.21 2.98 -666.33 -1.99 -32.20 16 15 C -0.23 -12.78 10.33 84.03 0.87 -11.91 16 16 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 17 C -0.07 -3.76 5.49 84.86 0.47 -3.30 16 18 N -0.95 -55.81 10.06 21.65 0.22 -55.59 16 19 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 21 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 22 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 23 C 0.14 6.50 5.68 86.56 0.49 6.99 16 24 C -0.11 -3.75 5.82 31.12 0.18 -3.57 16 25 C 0.09 2.01 5.73 41.41 0.24 2.25 16 26 C -0.26 -7.20 9.14 21.99 0.20 -7.00 16 27 C 0.03 0.80 12.03 85.24 1.03 1.82 16 28 N -0.33 -8.42 12.58 -57.02 -0.72 -9.14 16 29 N -0.37 -7.66 4.01 -356.02 -1.43 -9.09 16 30 C 0.09 0.82 11.27 127.77 1.44 2.26 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 0.79 7.57 -2.39 -0.02 0.77 16 33 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.42 5.93 7.28 -92.71 -0.67 5.25 16 35 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.09 1.39 7.47 -2.39 -0.02 1.38 16 38 H 0.08 1.46 7.10 -2.39 -0.02 1.45 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.04 1.75 7.28 -2.39 -0.02 1.73 16 42 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 43 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 44 H 0.08 4.51 5.45 -2.39 -0.01 4.50 16 45 H -0.02 -0.85 7.71 -2.38 -0.02 -0.87 16 46 H 0.09 2.29 7.11 -2.39 -0.02 2.27 16 47 H 0.05 1.82 7.62 -2.38 -0.02 1.80 16 48 H 0.13 4.19 6.80 -2.91 -0.02 4.17 16 49 H 0.20 3.87 8.06 -2.91 -0.02 3.84 16 50 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.11 0.43 6.97 -2.39 -0.02 0.41 16 52 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -78.50 401.58 3.37 -75.14 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.25 Total: 20.09 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 7.24 Total: -0.80 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -6.11 Total: -123.10 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.04 Total: -19.58 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -78.50 3.37 -75.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107410839.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.831 kcal (2) G-P(sol) polarization free energy of solvation -78.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds