Wall clock time and date at job start Wed Apr 1 2020 05:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47048 * 2 1 4 4 C 1.53000 * 109.47462 * 120.00320 * 2 1 3 5 5 C 1.50703 * 109.46901 * 294.99822 * 4 2 1 6 6 O 1.21278 * 120.00119 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99930 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00441 * 180.02562 * 7 5 4 9 9 C 1.52990 * 109.47774 * 179.97438 * 8 7 5 10 10 C 1.53362 * 111.22901 * 297.62949 * 9 8 7 11 11 C 1.55534 * 105.83745 * 241.97356 * 10 9 8 12 12 C 1.54677 * 104.34928 * 334.35271 * 11 10 9 13 13 C 1.54573 * 111.32208 * 177.45444 * 9 8 7 14 14 H 1.09003 * 111.92347 * 18.70704 * 13 9 8 15 15 N 1.46896 * 107.36366 * 255.61747 * 13 9 8 16 16 C 1.36946 * 125.24742 * 181.63088 * 15 13 9 17 17 H 1.08000 * 119.99709 * 0.02562 * 16 15 13 18 18 C 1.38807 * 119.99658 * 180.02562 * 16 15 13 19 19 N 1.31620 * 120.00375 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99673 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46915 * 90.00223 * 20 18 16 22 22 H 1.48497 * 109.47293 * 210.00082 * 20 18 16 23 23 H 1.48496 * 109.47301 * 330.00604 * 20 18 16 24 24 C 1.46735 * 109.50161 * 1.65640 * 15 13 9 25 25 C 1.53865 * 111.25954 * 61.01185 * 9 8 7 26 26 N 1.46499 * 109.46850 * 240.00327 * 2 1 3 27 27 C 1.36887 * 126.39910 * 120.00015 * 26 2 1 28 28 C 1.34672 * 106.81700 * 179.97438 * 27 26 2 29 29 N 1.34127 * 108.01948 * 0.22851 * 28 27 26 30 30 C 1.30502 * 109.25683 * 359.61488 * 29 28 27 31 31 H 1.09004 * 109.46867 * 299.99466 * 1 2 3 32 32 H 1.08992 * 109.47396 * 59.99695 * 1 2 3 33 33 H 1.08997 * 109.47048 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47095 * 55.00038 * 4 2 1 35 35 H 1.09000 * 109.47341 * 175.00004 * 4 2 1 36 36 H 0.97007 * 119.99993 * 0.02562 * 7 5 4 37 37 H 1.09002 * 109.46574 * 299.99985 * 8 7 5 38 38 H 1.08999 * 109.47180 * 59.99233 * 8 7 5 39 39 H 1.09004 * 110.04943 * 1.97581 * 10 9 8 40 40 H 1.08999 * 110.05849 * 123.46848 * 10 9 8 41 41 H 1.09007 * 110.54080 * 215.54809 * 11 10 9 42 42 H 1.08999 * 110.35276 * 93.07171 * 11 10 9 43 43 H 1.09008 * 110.61496 * 278.64973 * 12 11 10 44 44 H 1.09006 * 110.61414 * 155.67027 * 12 11 10 45 45 H 0.96997 * 119.99932 * 180.02562 * 19 18 16 46 46 H 1.08995 * 110.04126 * 221.96599 * 24 15 13 47 47 H 1.09002 * 110.04270 * 100.50984 * 24 15 13 48 48 H 1.08998 * 110.57727 * 212.52050 * 25 9 8 49 49 H 1.09001 * 110.56921 * 335.24187 * 25 9 8 50 50 H 1.07997 * 126.58796 * 359.97438 * 27 26 2 51 51 H 1.08002 * 125.98510 * 179.97438 * 28 27 26 52 52 H 1.08003 * 125.64479 * 180.14464 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6415 0.0570 2.4766 6 8 1.0119 1.0873 2.3633 7 7 1.9855 -0.3914 3.7001 8 6 1.5976 0.3647 4.8933 9 6 2.1077 -0.3564 6.1424 10 6 1.4753 -1.7469 6.2780 11 6 0.6744 -1.7208 7.6111 12 6 1.3837 -0.6424 8.4633 13 6 1.7761 0.4392 7.4255 14 1 0.9832 1.1684 7.2587 15 7 3.0189 1.0776 7.8791 16 6 3.1472 1.8464 9.0051 17 1 2.2908 2.0225 9.6391 18 6 4.3779 2.3992 9.3314 19 7 5.4214 2.1849 8.5584 20 14 4.5528 3.4484 10.8670 21 1 4.9150 2.5838 12.0187 22 1 5.6170 4.4622 10.6552 23 1 3.2655 4.1333 11.1478 24 6 4.1015 0.7649 6.9392 25 6 3.6424 -0.4667 6.1353 26 7 2.0183 -0.6905 -1.1962 27 6 2.8084 -0.1553 -2.1775 28 6 3.0190 -1.1296 -3.0830 29 7 2.3709 -2.2283 -2.6685 30 6 1.7734 -1.9742 -1.5364 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6055 -1.7199 1.2950 35 1 3.1264 -0.7995 1.2055 36 1 2.4901 -1.2150 3.7906 37 1 2.0315 1.3636 4.8473 38 1 0.5112 0.4422 4.9371 39 1 0.8177 -1.9426 5.4310 40 1 2.2537 -2.5081 6.3312 41 1 0.7231 -2.6911 8.1056 42 1 -0.3621 -1.4398 7.4251 43 1 2.2718 -1.0546 8.9425 44 1 0.7012 -0.2309 9.2071 45 1 6.2815 2.5710 8.7867 46 1 5.0159 0.5347 7.4858 47 1 4.2689 1.6077 6.2684 48 1 3.9627 -1.3856 6.6262 49 1 4.0246 -0.4255 5.1153 50 1 3.1896 0.8544 -2.2178 51 1 3.6036 -1.0406 -3.9867 52 1 1.1782 -2.6736 -0.9680 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107561515.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:49 Heat of formation + Delta-G solvation = 44.685285 kcal Electronic energy + Delta-G solvation = -31006.675111 eV Core-core repulsion = 27007.484692 eV Total energy + Delta-G solvation = -3999.190419 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.33874 -40.29882 -39.19479 -36.01801 -34.83755 -34.04114 -31.85985 -31.30229 -30.45215 -29.49838 -28.77562 -27.41054 -26.74813 -24.57721 -23.90867 -23.42531 -21.60690 -21.14144 -20.31434 -20.12924 -19.86610 -18.36628 -17.82734 -17.16254 -16.58643 -16.06552 -15.78942 -15.28968 -15.09209 -14.97295 -14.65986 -14.34495 -14.13850 -13.92749 -13.77433 -13.59698 -13.47766 -13.21162 -13.12307 -12.95067 -12.61922 -12.18565 -11.91724 -11.88345 -11.67328 -11.53571 -11.34246 -11.19355 -10.86085 -10.78041 -10.73103 -10.33702 -10.24623 -10.18475 -10.13437 -9.96139 -9.91615 -9.80507 -9.64226 -9.53486 -9.02787 -8.74784 -8.63803 -6.86286 -5.70005 -3.09035 1.82521 2.37655 2.45093 2.96918 3.17787 3.37304 3.42976 3.44535 4.05300 4.33273 4.45493 4.46741 4.49482 4.66520 4.76612 4.88166 4.90757 4.95075 4.99860 5.08918 5.20853 5.35804 5.44300 5.45657 5.47355 5.49158 5.51542 5.68518 5.75158 5.79831 5.84380 5.94362 5.99398 6.01540 6.06853 6.10098 6.23717 6.29575 6.35469 6.39786 6.51044 6.51648 6.62206 6.69414 6.79546 6.94146 7.06196 7.38472 7.49770 7.63848 7.82154 7.85416 8.06745 8.31227 9.20577 9.81583 10.44366 11.35693 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017217 B = 0.002230 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.919649 B =12554.118865 C =13312.089919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 H 0.110 0.890 4 C -0.154 4.154 5 C 0.516 3.484 6 O -0.540 6.540 7 N -0.718 5.718 8 C 0.140 3.860 9 C -0.082 4.082 10 C -0.111 4.111 11 C -0.122 4.122 12 C -0.131 4.131 13 C 0.173 3.827 14 H 0.047 0.953 15 N -0.596 5.596 16 C -0.220 4.220 17 H 0.077 0.923 18 C -0.010 4.010 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.163 3.837 25 C -0.133 4.133 26 N -0.453 5.453 27 C -0.053 4.053 28 C -0.034 4.034 29 N -0.497 5.497 30 C 0.180 3.820 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.401 0.599 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.251 0.749 46 H 0.093 0.907 47 H 0.012 0.988 48 H 0.061 0.939 49 H 0.055 0.945 50 H 0.173 0.827 51 H 0.168 0.832 52 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.789 -9.430 -15.810 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 H 0.128 0.872 4 C -0.195 4.195 5 C 0.301 3.699 6 O -0.417 6.417 7 N -0.369 5.369 8 C 0.017 3.983 9 C -0.083 4.083 10 C -0.149 4.149 11 C -0.160 4.160 12 C -0.170 4.170 13 C 0.065 3.935 14 H 0.065 0.935 15 N -0.320 5.320 16 C -0.349 4.349 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.571 5.571 20 Si 0.742 3.258 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.208 1.208 24 C 0.038 3.962 25 C -0.172 4.172 26 N -0.136 5.136 27 C -0.187 4.187 28 C -0.182 4.182 29 N -0.216 5.216 30 C -0.102 4.102 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.236 0.764 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.111 0.889 47 H 0.030 0.970 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.190 0.810 51 H 0.185 0.815 52 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -8.126 -9.205 -16.061 20.217 hybrid contribution 0.514 0.975 1.291 1.697 sum -7.612 -8.230 -14.770 18.543 Atomic orbital electron populations 1.22298 0.92303 1.02987 1.04816 1.21162 0.96274 0.96985 0.81017 0.87172 1.22013 1.04051 1.00856 0.92532 1.20130 0.79670 0.85646 0.84417 1.90708 1.40140 1.24339 1.86557 1.46057 1.57074 1.27854 1.05886 1.21382 0.99422 0.95380 0.82072 1.21877 0.96933 0.95071 0.94423 1.22378 0.99044 0.95844 0.97588 1.22519 0.98671 0.99151 0.95702 1.22997 0.99828 0.96152 0.98067 1.21521 0.90413 0.91918 0.89669 0.93548 1.44337 1.03385 1.58425 1.25833 1.19030 0.95018 1.22206 0.98623 0.90522 1.24778 0.95893 1.00919 0.99006 1.69878 1.00180 1.48894 1.38123 0.86117 0.77308 0.79801 0.82544 1.21651 1.21730 1.20753 1.21426 0.93653 0.90750 0.90349 1.22797 0.92903 1.01563 0.99902 1.45798 1.37933 1.11389 1.18486 1.22809 1.02176 1.01372 0.92294 1.22302 1.04733 0.89666 1.01487 1.70301 1.12440 1.28303 1.10506 1.24868 1.04006 0.85492 0.95874 0.88210 0.91875 0.92190 0.88032 0.87965 0.76439 0.90804 0.91554 0.92285 0.91777 0.92505 0.92405 0.90952 0.92701 0.93818 0.88946 0.97023 0.92059 0.92641 0.80976 0.81481 0.78316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 8.99 37.16 0.33 -0.98 16 2 C 0.15 1.18 2.70 -67.93 -0.18 1.00 16 3 H 0.11 0.97 7.89 -51.93 -0.41 0.56 16 4 C -0.15 -1.13 5.17 -27.88 -0.14 -1.27 16 5 C 0.52 5.59 7.55 -10.98 -0.08 5.50 16 6 O -0.54 -7.72 13.97 5.56 0.08 -7.64 16 7 N -0.72 -7.77 4.65 -60.30 -0.28 -8.05 16 8 C 0.14 1.98 4.43 -4.05 -0.02 1.96 16 9 C -0.08 -1.23 0.53 -153.05 -0.08 -1.31 16 10 C -0.11 -1.35 5.75 -25.20 -0.14 -1.50 16 11 C -0.12 -1.61 6.88 -24.50 -0.17 -1.78 16 12 C -0.13 -2.23 6.23 -24.82 -0.15 -2.38 16 13 C 0.17 3.27 3.60 -65.86 -0.24 3.04 16 14 H 0.05 0.91 7.93 -51.93 -0.41 0.50 16 15 N -0.60 -14.20 2.99 -162.43 -0.49 -14.68 16 16 C -0.22 -5.87 9.96 -15.06 -0.15 -6.02 16 17 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 18 C -0.01 -0.29 5.48 -17.43 -0.10 -0.38 16 19 N -0.92 -26.27 10.14 55.49 0.56 -25.71 16 20 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.16 3.73 5.65 -3.35 -0.02 3.71 16 25 C -0.13 -2.22 5.77 -25.72 -0.15 -2.37 16 26 N -0.45 -3.87 2.62 -111.46 -0.29 -4.16 16 27 C -0.05 -0.47 11.54 -16.56 -0.19 -0.66 16 28 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 29 N -0.50 -5.76 11.25 -14.66 -0.16 -5.92 16 30 C 0.18 1.65 11.65 -90.38 -1.05 0.59 16 31 H 0.10 0.97 5.95 -51.93 -0.31 0.66 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.40 7.95 -51.93 -0.41 -0.02 16 34 H 0.10 0.54 8.08 -51.93 -0.42 0.12 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.40 3.51 7.55 -40.82 -0.31 3.20 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.62 7.51 -51.93 -0.39 0.23 16 40 H 0.06 0.75 7.28 -51.93 -0.38 0.37 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 1.39 8.06 -51.92 -0.42 0.97 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 47 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 48 H 0.06 1.00 7.42 -51.93 -0.39 0.62 16 49 H 0.05 0.82 7.02 -51.93 -0.36 0.45 16 50 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 51 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 52 H 0.20 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 404.48 15.07 6.10 6.10 Total: -1.00 -32.08 404.48 -10.98 -43.06 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -8.72 Total: 3.69 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -2.75 Total: -3.39 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.66 Total: -58.52 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.08 Total: -7.64 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.08 -10.98 -43.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107561515.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.747 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds