Wall clock time and date at job start Wed Apr 1 2020 05:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47048 * 2 1 4 4 C 1.53000 * 109.47462 * 120.00320 * 2 1 3 5 5 C 1.50703 * 109.46901 * 294.99822 * 4 2 1 6 6 O 1.21278 * 120.00119 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99930 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00441 * 180.02562 * 7 5 4 9 9 C 1.52990 * 109.47774 * 179.97438 * 8 7 5 10 10 C 1.53362 * 111.22901 * 297.62949 * 9 8 7 11 11 C 1.55534 * 105.83745 * 241.97356 * 10 9 8 12 12 C 1.54677 * 104.34928 * 334.35271 * 11 10 9 13 13 C 1.54573 * 111.32208 * 177.45444 * 9 8 7 14 14 H 1.09003 * 111.92347 * 18.70704 * 13 9 8 15 15 N 1.46896 * 107.36366 * 255.61747 * 13 9 8 16 16 C 1.36946 * 125.24742 * 181.63088 * 15 13 9 17 17 H 1.08000 * 119.99709 * 0.02562 * 16 15 13 18 18 C 1.38807 * 119.99658 * 180.02562 * 16 15 13 19 19 N 1.31620 * 120.00375 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99673 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46915 * 90.00223 * 20 18 16 22 22 H 1.48497 * 109.47293 * 210.00082 * 20 18 16 23 23 H 1.48496 * 109.47301 * 330.00604 * 20 18 16 24 24 C 1.46735 * 109.50161 * 1.65640 * 15 13 9 25 25 C 1.53865 * 111.25954 * 61.01185 * 9 8 7 26 26 N 1.46499 * 109.46850 * 240.00327 * 2 1 3 27 27 C 1.36887 * 126.39910 * 120.00015 * 26 2 1 28 28 C 1.34672 * 106.81700 * 179.97438 * 27 26 2 29 29 N 1.34127 * 108.01948 * 0.22851 * 28 27 26 30 30 C 1.30502 * 109.25683 * 359.61488 * 29 28 27 31 31 H 1.09004 * 109.46867 * 299.99466 * 1 2 3 32 32 H 1.08992 * 109.47396 * 59.99695 * 1 2 3 33 33 H 1.08997 * 109.47048 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47095 * 55.00038 * 4 2 1 35 35 H 1.09000 * 109.47341 * 175.00004 * 4 2 1 36 36 H 0.97007 * 119.99993 * 0.02562 * 7 5 4 37 37 H 1.09002 * 109.46574 * 299.99985 * 8 7 5 38 38 H 1.08999 * 109.47180 * 59.99233 * 8 7 5 39 39 H 1.09004 * 110.04943 * 1.97581 * 10 9 8 40 40 H 1.08999 * 110.05849 * 123.46848 * 10 9 8 41 41 H 1.09007 * 110.54080 * 215.54809 * 11 10 9 42 42 H 1.08999 * 110.35276 * 93.07171 * 11 10 9 43 43 H 1.09008 * 110.61496 * 278.64973 * 12 11 10 44 44 H 1.09006 * 110.61414 * 155.67027 * 12 11 10 45 45 H 0.96997 * 119.99932 * 180.02562 * 19 18 16 46 46 H 1.08995 * 110.04126 * 221.96599 * 24 15 13 47 47 H 1.09002 * 110.04270 * 100.50984 * 24 15 13 48 48 H 1.08998 * 110.57727 * 212.52050 * 25 9 8 49 49 H 1.09001 * 110.56921 * 335.24187 * 25 9 8 50 50 H 1.07997 * 126.58796 * 359.97438 * 27 26 2 51 51 H 1.08002 * 125.98510 * 179.97438 * 28 27 26 52 52 H 1.08003 * 125.64479 * 180.14464 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6415 0.0570 2.4766 6 8 1.0119 1.0873 2.3633 7 7 1.9855 -0.3914 3.7001 8 6 1.5976 0.3647 4.8933 9 6 2.1077 -0.3564 6.1424 10 6 1.4753 -1.7469 6.2780 11 6 0.6744 -1.7208 7.6111 12 6 1.3837 -0.6424 8.4633 13 6 1.7761 0.4392 7.4255 14 1 0.9832 1.1684 7.2587 15 7 3.0189 1.0776 7.8791 16 6 3.1472 1.8464 9.0051 17 1 2.2908 2.0225 9.6391 18 6 4.3779 2.3992 9.3314 19 7 5.4214 2.1849 8.5584 20 14 4.5528 3.4484 10.8670 21 1 4.9150 2.5838 12.0187 22 1 5.6170 4.4622 10.6552 23 1 3.2655 4.1333 11.1478 24 6 4.1015 0.7649 6.9392 25 6 3.6424 -0.4667 6.1353 26 7 2.0183 -0.6905 -1.1962 27 6 2.8084 -0.1553 -2.1775 28 6 3.0190 -1.1296 -3.0830 29 7 2.3709 -2.2283 -2.6685 30 6 1.7734 -1.9742 -1.5364 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6055 -1.7199 1.2950 35 1 3.1264 -0.7995 1.2055 36 1 2.4901 -1.2150 3.7906 37 1 2.0315 1.3636 4.8473 38 1 0.5112 0.4422 4.9371 39 1 0.8177 -1.9426 5.4310 40 1 2.2537 -2.5081 6.3312 41 1 0.7231 -2.6911 8.1056 42 1 -0.3621 -1.4398 7.4251 43 1 2.2718 -1.0546 8.9425 44 1 0.7012 -0.2309 9.2071 45 1 6.2815 2.5710 8.7867 46 1 5.0159 0.5347 7.4858 47 1 4.2689 1.6077 6.2684 48 1 3.9627 -1.3856 6.6262 49 1 4.0246 -0.4255 5.1153 50 1 3.1896 0.8544 -2.2178 51 1 3.6036 -1.0406 -3.9867 52 1 1.1782 -2.6736 -0.9680 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107561515.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:48 Heat of formation + Delta-G solvation = 26.719774 kcal Electronic energy + Delta-G solvation = -31007.454154 eV Core-core repulsion = 27007.484692 eV Total energy + Delta-G solvation = -3999.969462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.00042 -41.41363 -40.35834 -36.80552 -36.19285 -35.36602 -33.46665 -32.28764 -31.77842 -30.21678 -29.73908 -28.47507 -28.30214 -25.79503 -25.60111 -24.19432 -22.37244 -22.17787 -21.60144 -21.23613 -20.88635 -19.64505 -18.88164 -18.54592 -17.62291 -16.93599 -16.83124 -16.63949 -16.22459 -16.05580 -15.90706 -15.44897 -15.20909 -14.88135 -14.65671 -14.58722 -14.54620 -14.31210 -14.17236 -14.07208 -13.78818 -13.43364 -13.23156 -12.96310 -12.88900 -12.77122 -12.61456 -12.50194 -12.40646 -12.23218 -12.03389 -11.86511 -11.62274 -11.52128 -11.41218 -11.33259 -11.03779 -10.93434 -10.86589 -10.68264 -10.56349 -10.05170 -9.41428 -8.83262 -7.78052 -5.17942 1.17787 1.44261 1.45296 1.53687 1.60938 1.68705 2.26987 2.33152 2.49636 3.32927 3.42963 3.50502 3.66124 3.71413 3.74125 3.82651 3.91214 3.99049 4.06292 4.18602 4.29680 4.39508 4.44646 4.46865 4.53261 4.54244 4.61528 4.62968 4.67429 4.75080 4.77731 4.84416 4.87913 4.90523 4.95178 5.05891 5.16508 5.18887 5.21677 5.31255 5.38890 5.41596 5.44272 5.48790 5.55142 5.62263 5.72037 5.85654 5.87453 6.31226 6.31778 6.54792 7.14706 7.18569 7.24016 7.85011 8.45410 9.25613 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017217 B = 0.002230 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.919649 B =12554.118865 C =13312.089919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.153 3.847 3 H 0.098 0.902 4 C -0.141 4.141 5 C 0.517 3.483 6 O -0.577 6.577 7 N -0.709 5.709 8 C 0.153 3.847 9 C -0.067 4.067 10 C -0.101 4.101 11 C -0.112 4.112 12 C -0.126 4.126 13 C 0.156 3.844 14 H 0.036 0.964 15 N -0.615 5.615 16 C -0.226 4.226 17 H 0.077 0.923 18 C -0.069 4.069 19 N -0.950 5.950 20 Si 0.972 3.028 21 H -0.285 1.285 22 H -0.297 1.297 23 H -0.273 1.273 24 C 0.168 3.832 25 C -0.116 4.116 26 N -0.451 5.451 27 C -0.057 4.057 28 C -0.055 4.055 29 N -0.536 5.536 30 C 0.181 3.819 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.134 0.866 35 H 0.113 0.887 36 H 0.416 0.584 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.048 0.952 45 H 0.244 0.756 46 H 0.055 0.945 47 H -0.028 1.028 48 H 0.073 0.927 49 H 0.079 0.921 50 H 0.191 0.809 51 H 0.179 0.821 52 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.342 -12.041 -16.636 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.050 3.950 3 H 0.116 0.884 4 C -0.181 4.181 5 C 0.304 3.696 6 O -0.457 6.457 7 N -0.361 5.361 8 C 0.029 3.971 9 C -0.068 4.068 10 C -0.138 4.138 11 C -0.150 4.150 12 C -0.166 4.166 13 C 0.049 3.951 14 H 0.054 0.946 15 N -0.339 5.339 16 C -0.356 4.356 17 H 0.095 0.905 18 C -0.262 4.262 19 N -0.600 5.600 20 Si 0.802 3.198 21 H -0.212 1.212 22 H -0.224 1.224 23 H -0.198 1.198 24 C 0.043 3.957 25 C -0.155 4.155 26 N -0.133 5.133 27 C -0.190 4.190 28 C -0.202 4.202 29 N -0.255 5.255 30 C -0.102 4.102 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.152 0.848 35 H 0.131 0.869 36 H 0.253 0.747 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.073 0.927 47 H -0.010 1.010 48 H 0.091 0.909 49 H 0.097 0.903 50 H 0.208 0.792 51 H 0.196 0.804 52 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -9.702 -11.856 -16.898 22.809 hybrid contribution 0.957 1.864 1.539 2.600 sum -8.746 -9.992 -15.359 20.303 Atomic orbital electron populations 1.22215 0.92172 1.03813 1.03626 1.21089 0.96280 0.96503 0.81168 0.88385 1.21963 1.04802 1.01488 0.89892 1.20704 0.78597 0.85203 0.85083 1.90711 1.41800 1.26156 1.87061 1.45870 1.57229 1.28036 1.04939 1.21006 0.99215 0.93775 0.83132 1.21745 0.95703 0.96544 0.92793 1.22362 0.99714 0.93524 0.98210 1.22477 0.98993 0.98379 0.95179 1.22828 0.99128 0.96762 0.97892 1.21836 0.88273 0.92393 0.92575 0.94637 1.44610 1.05592 1.58415 1.25279 1.19356 0.94914 1.21883 0.99418 0.90482 1.25555 0.95889 1.02787 1.01941 1.70133 1.00212 1.50050 1.39631 0.85155 0.77163 0.78122 0.79404 1.21214 1.22402 1.19761 1.21173 0.92655 0.92123 0.89798 1.22632 0.94179 0.98584 1.00087 1.45810 1.37762 1.11332 1.18444 1.23153 1.01852 1.02025 0.92006 1.22622 1.05300 0.89814 1.02421 1.70282 1.13859 1.29401 1.11984 1.25434 1.03415 0.85899 0.95420 0.90010 0.92393 0.90340 0.84774 0.86896 0.74682 0.94900 0.91158 0.89242 0.90145 0.90497 0.90875 0.93459 0.93344 0.94662 0.92731 1.00992 0.90866 0.90277 0.79188 0.80421 0.75454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 8.99 71.98 0.65 -1.54 16 2 C 0.15 2.07 2.70 44.99 0.12 2.19 16 3 H 0.10 1.60 7.89 -2.39 -0.02 1.58 16 4 C -0.14 -1.57 5.17 29.85 0.15 -1.41 16 5 C 0.52 9.95 7.55 87.66 0.66 10.61 16 6 O -0.58 -15.98 13.97 -3.02 -0.04 -16.02 16 7 N -0.71 -13.28 4.65 -463.09 -2.15 -15.43 16 8 C 0.15 4.12 4.43 86.38 0.38 4.50 16 9 C -0.07 -1.88 0.53 -51.24 -0.03 -1.91 16 10 C -0.10 -2.01 5.75 31.59 0.18 -1.83 16 11 C -0.11 -2.52 6.88 32.04 0.22 -2.30 16 12 C -0.13 -4.19 6.23 31.83 0.20 -4.00 16 13 C 0.16 5.92 3.60 46.12 0.17 6.08 16 14 H 0.04 1.43 7.93 -2.39 -0.02 1.41 16 15 N -0.61 -30.40 2.99 -667.80 -1.99 -32.39 16 16 C -0.23 -12.49 9.96 84.03 0.84 -11.65 16 17 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 18 C -0.07 -3.94 5.48 84.86 0.47 -3.47 16 19 N -0.95 -56.78 10.14 21.65 0.22 -56.56 16 20 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 24 C 0.17 8.02 5.65 86.70 0.49 8.50 16 25 C -0.12 -3.76 5.77 31.25 0.18 -3.58 16 26 N -0.45 -6.61 2.62 -506.55 -1.33 -7.93 16 27 C -0.06 -0.91 11.54 83.09 0.96 0.05 16 28 C -0.05 -1.02 11.87 83.52 0.99 -0.03 16 29 N -0.54 -11.56 11.25 -200.31 -2.25 -13.81 16 30 C 0.18 2.81 11.65 180.26 2.10 4.91 16 31 H 0.08 1.48 5.95 -2.38 -0.01 1.46 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 0.76 7.95 -2.39 -0.02 0.75 16 34 H 0.13 0.69 8.08 -2.39 -0.02 0.67 16 35 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.42 5.42 7.55 -92.70 -0.70 4.72 16 37 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.09 1.34 7.51 -2.38 -0.02 1.32 16 40 H 0.08 1.44 7.28 -2.39 -0.02 1.42 16 41 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.05 1.80 8.06 -2.38 -0.02 1.78 16 44 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 45 H 0.24 14.26 8.31 -92.71 -0.77 13.49 16 46 H 0.05 3.02 6.17 -2.39 -0.01 3.00 16 47 H -0.03 -1.51 8.14 -2.39 -0.02 -1.53 16 48 H 0.07 2.23 7.42 -2.39 -0.02 2.21 16 49 H 0.08 2.18 7.02 -2.39 -0.02 2.16 16 50 H 0.19 2.11 8.06 -2.91 -0.02 2.09 16 51 H 0.18 2.63 8.06 -2.91 -0.02 2.60 16 52 H 0.23 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -75.59 404.48 3.41 -72.18 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.21 Total: 16.85 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 8.73 Total: 5.11 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -7.51 Total: -126.14 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.04 Total: -16.02 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -75.59 3.41 -72.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107561515.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.899 kcal (2) G-P(sol) polarization free energy of solvation -75.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds