Wall clock time and date at job start Wed Apr 1 2020 04:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47156 * 2 1 4 4 C 1.53005 * 109.46669 * 119.99200 * 2 1 3 5 5 C 1.50700 * 109.47586 * 295.00222 * 4 2 1 6 6 C 1.34660 * 126.59125 * 84.97242 * 5 4 2 7 7 N 1.34130 * 108.02384 * 180.02562 * 6 5 4 8 8 C 1.30505 * 109.25263 * 0.02562 * 7 6 5 9 9 N 1.35047 * 108.69811 * 0.25667 * 8 7 6 10 10 H 0.97000 * 126.39146 * 179.74237 * 9 8 7 11 11 C 1.50692 * 109.47615 * 239.99377 * 2 1 3 12 12 O 1.21288 * 120.00283 * 240.00362 * 11 2 1 13 13 N 1.34780 * 119.99815 * 59.99825 * 11 2 1 14 14 C 1.46503 * 119.99818 * 179.97438 * 13 11 2 15 15 C 1.53002 * 109.46991 * 180.02562 * 14 13 11 16 16 C 1.53515 * 111.15826 * 299.11855 * 15 14 13 17 17 C 1.54189 * 106.58768 * 240.87616 * 16 15 14 18 18 C 1.54741 * 104.34783 * 335.43468 * 17 16 15 19 19 C 1.54666 * 111.22906 * 180.02562 * 15 14 13 20 20 H 1.09000 * 112.39997 * 19.49526 * 19 15 14 21 21 N 1.47254 * 106.10344 * 256.40723 * 19 15 14 22 22 C 1.36941 * 126.51706 * 150.10756 * 21 19 15 23 23 H 1.07995 * 120.00053 * 344.39638 * 22 21 19 24 24 C 1.38812 * 119.99462 * 164.39704 * 22 21 19 25 25 N 1.31619 * 120.00327 * 351.67158 * 24 22 21 26 26 Si 1.86803 * 119.99935 * 171.67156 * 24 22 21 27 27 H 1.48502 * 109.47196 * 94.97821 * 26 24 22 28 28 H 1.48495 * 109.47118 * 214.98267 * 26 24 22 29 29 H 1.48508 * 109.46666 * 334.98232 * 26 24 22 30 30 C 1.47154 * 106.95991 * 330.07708 * 21 19 15 31 31 C 1.53678 * 111.17224 * 62.60371 * 15 14 13 32 32 H 1.09001 * 109.47535 * 300.00362 * 1 2 3 33 33 H 1.09002 * 109.47068 * 60.00873 * 1 2 3 34 34 H 1.09003 * 109.47506 * 180.02562 * 1 2 3 35 35 H 1.09001 * 109.46828 * 175.00261 * 4 2 1 36 36 H 1.09003 * 109.47041 * 55.01000 * 4 2 1 37 37 H 1.08005 * 125.98979 * 0.04643 * 6 5 4 38 38 H 1.07999 * 125.64846 * 179.97438 * 8 7 6 39 39 H 0.96993 * 120.00072 * 0.02562 * 13 11 2 40 40 H 1.08991 * 109.47522 * 300.00873 * 14 13 11 41 41 H 1.09003 * 109.46734 * 60.00926 * 14 13 11 42 42 H 1.09001 * 110.04420 * 0.98352 * 16 15 14 43 43 H 1.09003 * 110.04189 * 122.43821 * 16 15 14 44 44 H 1.09005 * 110.80113 * 216.49911 * 17 16 15 45 45 H 1.09005 * 110.10546 * 94.02449 * 17 16 15 46 46 H 1.08999 * 110.65142 * 278.62398 * 18 17 16 47 47 H 1.08997 * 110.65223 * 155.53397 * 18 17 16 48 48 H 0.97003 * 120.00392 * 179.97438 * 25 24 22 49 49 H 1.09005 * 110.09610 * 150.06545 * 30 21 19 50 50 H 1.09007 * 110.09107 * 271.59504 * 30 21 19 51 51 H 1.08993 * 110.22944 * 241.06375 * 31 15 14 52 52 H 1.09002 * 110.22615 * 3.02209 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0398 -0.7211 1.2494 5 6 1.6411 0.0573 2.4767 6 6 0.4661 -0.0203 3.1298 7 7 0.5097 0.8312 4.1652 8 6 1.6672 1.4340 4.1781 9 7 2.4011 0.9842 3.1375 10 1 3.3001 1.2639 2.9038 11 6 2.0324 -0.7105 -1.2303 12 8 2.7297 -1.6966 -1.1189 13 7 1.7068 -0.2501 -2.4545 14 6 2.1957 -0.9405 -3.6506 15 6 1.6861 -0.2192 -4.8999 16 6 0.1518 -0.2158 -4.9507 17 6 -0.2476 -0.9662 -6.2371 18 6 0.9814 -0.8170 -7.1654 19 6 2.1792 -0.9164 -6.1894 20 1 2.4940 -1.9446 -6.0113 21 7 3.2724 -0.0805 -6.7133 22 6 4.3512 -0.5106 -7.4389 23 1 4.5991 -1.5613 -7.4667 24 6 5.1261 0.4041 -8.1387 25 7 4.7344 1.6565 -8.2411 26 14 6.7251 -0.1424 -8.9351 27 1 6.4771 -0.4858 -10.3584 28 1 7.7184 0.9587 -8.8574 29 1 7.2507 -1.3346 -8.2225 30 6 2.9847 1.3050 -6.3095 31 6 2.2290 1.2168 -4.9719 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 -0.3634 -1.0277 0.0005 35 1 3.1262 -0.7993 1.2058 36 1 1.6053 -1.7197 1.2953 37 1 -0.3657 -0.6570 2.8664 38 1 1.9837 2.1736 4.8986 39 1 1.1494 0.5386 -2.5436 40 1 3.2856 -0.9402 -3.6503 41 1 1.8327 -1.9683 -3.6506 42 1 -0.2522 -0.7165 -4.0709 43 1 -0.2180 0.8084 -5.0010 44 1 -1.1276 -0.5120 -6.6928 45 1 -0.4332 -2.0172 -6.0155 46 1 0.9710 0.1522 -7.6642 47 1 1.0122 -1.6258 -7.8954 48 1 5.2761 2.2958 -8.7298 49 1 3.9150 1.8578 -6.1784 50 1 2.3626 1.7924 -7.0604 51 1 1.4066 1.9319 -4.9554 52 1 2.9095 1.4045 -4.1414 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107573469.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:59 Heat of formation + Delta-G solvation = 5.817473 kcal Electronic energy + Delta-G solvation = -31048.316987 eV Core-core repulsion = 27047.441134 eV Total energy + Delta-G solvation = -4000.875853 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.95945 -41.42644 -40.38067 -36.34264 -35.96434 -35.32482 -33.44031 -33.34930 -31.99393 -30.77196 -29.34782 -28.45691 -27.51498 -25.96064 -25.51702 -23.96564 -22.38650 -22.15607 -21.77636 -21.39984 -20.74981 -19.65464 -18.92151 -18.75875 -17.91466 -16.95132 -16.82528 -16.56502 -16.17907 -15.84399 -15.59398 -15.43322 -15.21431 -15.07236 -14.90210 -14.49262 -14.48208 -14.13869 -14.07545 -13.72879 -13.60369 -13.47625 -13.34822 -13.03308 -12.87547 -12.74297 -12.51340 -12.22792 -12.17748 -12.07498 -12.02666 -11.82336 -11.68547 -11.55182 -11.45026 -11.36459 -11.08344 -10.95851 -10.90259 -10.71472 -10.60491 -10.02289 -9.26378 -8.79801 -7.89751 -5.23204 1.12887 1.43286 1.43854 1.53422 1.67823 2.13987 2.27055 2.40096 2.48336 3.28949 3.51582 3.63790 3.74007 3.74879 3.85868 3.92815 3.97613 4.02936 4.26094 4.32478 4.40051 4.42559 4.45174 4.48274 4.56274 4.63733 4.66072 4.67035 4.78293 4.82038 4.88874 4.90889 4.96471 4.98429 5.09353 5.14053 5.14684 5.19544 5.27816 5.32983 5.38772 5.40661 5.44522 5.50573 5.56078 5.61537 5.65670 5.80687 5.82870 6.24537 6.58919 6.61130 7.09468 7.17565 7.29534 7.77988 8.49294 9.23107 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015640 B = 0.002319 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.837754 B =12072.674094 C =13018.008847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 H 0.109 0.891 4 C -0.020 4.020 5 C -0.017 4.017 6 C -0.038 4.038 7 N -0.538 5.538 8 C 0.187 3.813 9 N -0.560 5.560 10 H 0.432 0.568 11 C 0.514 3.486 12 O -0.586 6.586 13 N -0.708 5.708 14 C 0.154 3.846 15 C -0.070 4.070 16 C -0.102 4.102 17 C -0.112 4.112 18 C -0.132 4.132 19 C 0.154 3.846 20 H 0.057 0.943 21 N -0.608 5.608 22 C -0.237 4.237 23 H 0.073 0.927 24 C -0.061 4.061 25 N -0.945 5.945 26 Si 0.970 3.030 27 H -0.287 1.287 28 H -0.293 1.293 29 H -0.272 1.272 30 C 0.176 3.824 31 C -0.118 4.118 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.174 0.826 38 H 0.240 0.760 39 H 0.414 0.586 40 H 0.035 0.965 41 H 0.064 0.936 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.042 0.958 47 H 0.046 0.954 48 H 0.247 0.753 49 H 0.028 0.972 50 H -0.006 1.006 51 H 0.088 0.912 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.546 0.535 20.915 23.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 H 0.127 0.873 4 C -0.059 4.059 5 C -0.134 4.134 6 C -0.186 4.186 7 N -0.257 5.257 8 C -0.097 4.097 9 N -0.164 5.164 10 H 0.273 0.727 11 C 0.301 3.699 12 O -0.467 6.467 13 N -0.360 5.360 14 C 0.029 3.971 15 C -0.071 4.071 16 C -0.140 4.140 17 C -0.150 4.150 18 C -0.172 4.172 19 C 0.046 3.954 20 H 0.075 0.925 21 N -0.330 5.330 22 C -0.367 4.367 23 H 0.090 0.910 24 C -0.254 4.254 25 N -0.593 5.593 26 Si 0.799 3.201 27 H -0.214 1.214 28 H -0.220 1.220 29 H -0.197 1.197 30 C 0.051 3.949 31 C -0.156 4.156 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.191 0.809 38 H 0.256 0.744 39 H 0.251 0.749 40 H 0.054 0.946 41 H 0.083 0.917 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.056 0.944 49 H 0.047 0.953 50 H 0.012 0.988 51 H 0.107 0.893 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.532 0.038 21.415 24.323 hybrid contribution 2.268 0.272 -1.865 2.949 sum -9.264 0.311 19.551 21.637 Atomic orbital electron populations 1.21859 0.90878 1.03318 1.03961 1.21217 0.99267 1.00581 0.90377 0.87328 1.19729 1.01477 0.97502 0.87176 1.21150 0.94122 0.98552 0.99543 1.22312 0.98257 1.02849 0.95148 1.70284 1.21242 1.11610 1.22578 1.25646 0.88070 1.02420 0.93564 1.43350 1.17442 1.32064 1.23572 0.72742 1.21127 0.79203 0.84089 0.85447 1.90705 1.39946 1.28575 1.87455 1.45899 1.53136 1.32166 1.04782 1.21038 0.97377 0.95545 0.83104 1.21810 0.96849 0.95166 0.93323 1.22196 0.91440 1.01865 0.98459 1.22232 0.96722 1.00921 0.95137 1.22873 0.96197 0.99933 0.98219 1.21975 0.87665 0.93926 0.91820 0.92493 1.44736 1.22898 1.03964 1.61439 1.19321 1.02847 0.93184 1.21300 0.90960 1.25608 1.02920 0.96355 1.00542 1.70124 1.39129 1.03418 1.46607 0.85197 0.79615 0.77074 0.78263 1.21376 1.22000 1.19670 1.20871 0.96088 0.86252 0.91720 1.22581 0.99807 0.95696 0.97532 0.90436 0.90655 0.91863 0.91094 0.89267 0.80913 0.74367 0.74916 0.94630 0.91749 0.89528 0.90229 0.90625 0.90941 0.93957 0.93520 0.94404 0.95344 0.98757 0.89341 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.77 71.98 0.63 -0.99 16 2 C -0.09 -1.38 2.71 -11.54 -0.03 -1.41 16 3 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.02 -0.31 4.60 29.85 0.14 -0.17 16 5 C -0.02 -0.26 6.09 40.95 0.25 -0.01 16 6 C -0.04 -0.68 10.10 83.52 0.84 0.17 16 7 N -0.54 -10.52 11.25 -200.31 -2.25 -12.78 16 8 C 0.19 2.34 13.04 180.26 2.35 4.69 16 9 N -0.56 -6.21 6.15 -186.49 -1.15 -7.36 16 10 H 0.43 2.44 8.96 -92.71 -0.83 1.61 16 11 C 0.51 11.75 7.15 87.65 0.63 12.38 16 12 O -0.59 -18.83 15.92 -3.05 -0.05 -18.87 16 13 N -0.71 -15.15 4.73 -463.06 -2.19 -17.34 16 14 C 0.15 4.41 4.27 86.38 0.37 4.78 16 15 C -0.07 -2.05 0.65 -51.21 -0.03 -2.09 16 16 C -0.10 -2.22 5.62 31.17 0.18 -2.05 16 17 C -0.11 -2.73 6.83 31.59 0.22 -2.51 16 18 C -0.13 -4.66 6.37 31.81 0.20 -4.46 16 19 C 0.15 5.98 3.59 46.04 0.17 6.15 16 20 H 0.06 2.27 7.95 -2.39 -0.02 2.25 16 21 N -0.61 -30.36 2.98 -666.32 -1.98 -32.34 16 22 C -0.24 -13.28 10.27 84.03 0.86 -12.42 16 23 H 0.07 3.96 7.84 -2.91 -0.02 3.94 16 24 C -0.06 -3.45 5.39 84.86 0.46 -3.00 16 25 N -0.94 -56.65 10.89 21.65 0.24 -56.42 16 26 Si 0.97 46.17 29.56 68.60 2.03 48.20 16 27 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 28 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 29 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 30 C 0.18 8.33 5.04 86.55 0.44 8.77 16 31 C -0.12 -3.87 5.82 31.12 0.18 -3.69 16 32 H 0.08 0.88 6.18 -2.39 -0.01 0.86 16 33 H 0.07 0.67 7.56 -2.39 -0.02 0.65 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 1.25 7.95 -2.39 -0.02 1.24 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.17 2.61 8.02 -2.91 -0.02 2.58 16 38 H 0.24 0.97 8.06 -2.91 -0.02 0.95 16 39 H 0.41 6.53 7.28 -92.71 -0.67 5.86 16 40 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.09 1.50 7.47 -2.39 -0.02 1.48 16 43 H 0.08 1.54 7.10 -2.39 -0.02 1.52 16 44 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 45 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 46 H 0.04 1.73 7.28 -2.39 -0.02 1.71 16 47 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.25 14.42 8.31 -92.71 -0.77 13.64 16 49 H 0.03 1.54 6.87 -2.38 -0.02 1.53 16 50 H -0.01 -0.29 7.71 -2.38 -0.02 -0.31 16 51 H 0.09 2.38 7.11 -2.39 -0.02 2.36 16 52 H 0.06 1.88 7.62 -2.39 -0.02 1.86 16 Total: -1.00 -77.18 403.54 1.90 -75.27 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -0.57 Total: 17.49 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 7.84 Total: 4.15 kcal Atomic # 7 Polarization: -118.90 SS G_CDS: -7.34 Total: -126.24 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.05 Total: -18.87 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -77.18 1.90 -75.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107573469.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.090 kcal (2) G-P(sol) polarization free energy of solvation -77.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds