Wall clock time and date at job start Wed Apr 1 2020 05:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47205 * 2 1 4 4 C 1.52989 * 109.47186 * 239.99362 * 2 1 3 5 5 C 1.50704 * 109.47322 * 65.00367 * 4 2 1 6 6 O 1.21284 * 119.99467 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00336 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99811 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46971 * 179.97438 * 8 7 5 10 10 C 1.53558 * 111.62060 * 299.87995 * 9 8 7 11 11 C 1.53653 * 107.09752 * 241.75031 * 10 9 8 12 12 C 1.53896 * 105.92998 * 340.08770 * 11 10 9 13 13 C 1.53749 * 105.45583 * 28.24547 * 12 11 10 14 14 H 1.08995 * 110.99225 * 96.13308 * 13 12 11 15 15 N 1.46975 * 109.57965 * 219.06559 * 13 12 11 16 16 C 1.36935 * 126.36004 * 267.64465 * 15 13 12 17 17 H 1.08002 * 120.00324 * 359.97438 * 16 15 13 18 18 C 1.38821 * 119.99684 * 179.97438 * 16 15 13 19 19 N 1.31616 * 119.99899 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99950 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46936 * 60.00394 * 20 18 16 22 22 H 1.48500 * 109.47050 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47222 * 300.00523 * 20 18 16 24 24 C 1.47108 * 107.27269 * 87.62221 * 15 13 12 25 25 C 1.53822 * 106.31877 * 29.69080 * 24 15 13 26 26 N 1.46507 * 109.46736 * 119.99458 * 2 1 3 27 27 C 1.34948 * 126.03749 * 35.00192 * 26 2 1 28 28 C 1.35312 * 107.74615 * 179.97438 * 27 26 2 29 29 C 1.39870 * 107.91844 * 0.02562 * 28 27 26 30 30 N 1.30834 * 108.20614 * 359.73866 * 29 28 27 31 31 H 1.08995 * 109.46917 * 59.99903 * 1 2 3 32 32 H 1.08995 * 109.46833 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47016 * 300.00742 * 1 2 3 34 34 H 1.09002 * 109.47427 * 305.00709 * 4 2 1 35 35 H 1.09003 * 109.47782 * 185.00013 * 4 2 1 36 36 H 0.96995 * 119.99720 * 359.97438 * 7 5 4 37 37 H 1.09004 * 109.47182 * 59.99942 * 8 7 5 38 38 H 1.08999 * 109.47415 * 299.99782 * 8 7 5 39 39 H 1.08999 * 109.88770 * 122.41022 * 10 9 8 40 40 H 1.08997 * 109.97239 * 1.13985 * 10 9 8 41 41 H 1.09002 * 110.17342 * 220.94901 * 11 10 9 42 42 H 1.09002 * 110.16922 * 99.22543 * 11 10 9 43 43 H 1.08996 * 110.25072 * 147.24294 * 12 11 10 44 44 H 1.09002 * 110.25169 * 269.25160 * 12 11 10 45 45 H 0.97001 * 119.99842 * 179.97438 * 19 18 16 46 46 H 1.08997 * 110.08741 * 148.90446 * 24 15 13 47 47 H 1.09003 * 110.08573 * 270.41822 * 24 15 13 48 48 H 1.09000 * 110.23954 * 98.72582 * 25 24 15 49 49 H 1.08995 * 110.24317 * 220.71790 * 25 24 15 50 50 H 1.08004 * 126.12403 * 359.95293 * 27 26 2 51 51 H 1.07998 * 126.04289 * 179.97438 * 28 27 26 52 52 H 1.08008 * 125.89580 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6415 0.0569 -2.4766 6 8 1.0111 1.0868 -2.3633 7 7 1.9846 -0.3922 -3.7001 8 6 1.5966 0.3641 -4.8933 9 6 2.1067 -0.3572 -6.1425 10 6 3.6364 -0.4915 -6.1333 11 6 4.1645 0.2752 -7.3557 12 6 2.9715 0.4078 -8.3189 13 6 1.7207 0.4045 -7.4248 14 1 1.3913 1.4211 -7.2105 15 7 0.6530 -0.3690 -8.0744 16 6 -0.3231 0.1267 -8.8969 17 1 -0.3555 1.1826 -9.1213 18 6 -1.2711 -0.7282 -9.4424 19 7 -1.2320 -2.0150 -9.1686 20 14 -2.6032 -0.0520 -10.5639 21 1 -1.9756 0.5894 -11.7470 22 1 -3.4841 -1.1609 -11.0105 23 1 -3.4091 0.9530 -9.8252 24 6 0.8283 -1.7745 -7.6772 25 6 1.4707 -1.7519 -6.2797 26 7 2.0183 -0.6905 1.1963 27 6 1.4401 -1.7558 1.7897 28 6 2.1966 -2.0928 2.8598 29 6 3.2737 -1.2026 2.9229 30 7 3.1707 -0.3649 1.9232 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5140 0.8899 34 1 1.6053 -1.7199 -1.2950 35 1 3.1264 -0.7996 -1.2055 36 1 2.4884 -1.2161 -3.7906 37 1 2.0312 1.3627 -4.8478 38 1 0.5103 0.4423 -4.9367 39 1 3.9168 -1.5424 -6.2049 40 1 4.0427 -0.0580 -5.2195 41 1 4.9707 -0.2840 -7.8306 42 1 4.5176 1.2621 -7.0566 43 1 3.0365 1.3440 -8.8732 44 1 2.9460 -0.4376 -9.0065 45 1 -1.8946 -2.6122 -9.5495 46 1 -0.1389 -2.2754 -7.6364 47 1 1.4839 -2.2842 -8.3833 48 1 0.7100 -1.8966 -5.5126 49 1 2.2358 -2.5245 -6.2038 50 1 0.5355 -2.2505 1.4682 51 1 2.0026 -2.9049 3.5447 52 1 4.0573 -1.2084 3.6662 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107600697.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:32 Heat of formation + Delta-G solvation = 59.381857 kcal Electronic energy + Delta-G solvation = -30968.804287 eV Core-core repulsion = 26970.251160 eV Total energy + Delta-G solvation = -3998.553127 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.45692 -40.19079 -39.15405 -35.72522 -34.76058 -33.97475 -31.74584 -30.82922 -30.37196 -29.98735 -28.74584 -27.49962 -26.89829 -24.49267 -23.79626 -23.29689 -21.27823 -20.92034 -20.47938 -20.02759 -19.59449 -18.40304 -17.73458 -17.18363 -16.58495 -16.03295 -15.70546 -15.21158 -14.94839 -14.83312 -14.46590 -14.34168 -13.93073 -13.79454 -13.64937 -13.52548 -13.22952 -13.12333 -13.00478 -12.80650 -12.65594 -12.06977 -11.90739 -11.76828 -11.61742 -11.49487 -11.18762 -11.06204 -10.88592 -10.85096 -10.70415 -10.59253 -10.28599 -10.10798 -10.09550 -10.05193 -9.79169 -9.63264 -9.61216 -9.51732 -8.95348 -8.83621 -8.68459 -6.90931 -5.66757 -3.11569 1.67326 2.17832 2.54655 2.63859 3.24268 3.38403 3.42969 3.43737 4.18121 4.35755 4.45185 4.57525 4.65463 4.74641 4.87027 4.91119 4.98963 5.02754 5.10251 5.16033 5.38798 5.45947 5.47550 5.48827 5.51700 5.56985 5.66792 5.70191 5.78795 5.86241 5.93151 5.95331 6.02438 6.07572 6.09822 6.11874 6.28804 6.36610 6.41386 6.42884 6.47603 6.62892 6.65283 6.74313 6.80341 6.86983 7.05987 7.47315 7.48336 7.50589 7.60564 7.83120 8.15820 8.38139 9.19122 9.80142 10.46216 11.33910 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.002295 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.003976 B =12198.582476 C =13107.167930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.176 3.824 3 H 0.111 0.889 4 C -0.155 4.155 5 C 0.517 3.483 6 O -0.540 6.540 7 N -0.718 5.718 8 C 0.142 3.858 9 C -0.083 4.083 10 C -0.110 4.110 11 C -0.119 4.119 12 C -0.137 4.137 13 C 0.171 3.829 14 H 0.056 0.944 15 N -0.588 5.588 16 C -0.219 4.219 17 H 0.077 0.923 18 C -0.011 4.011 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.139 3.861 25 C -0.130 4.130 26 N -0.366 5.366 27 C 0.056 3.944 28 C -0.279 4.279 29 C 0.041 3.959 30 N -0.298 5.298 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.400 0.600 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.068 0.932 45 H 0.252 0.748 46 H 0.119 0.881 47 H 0.006 0.994 48 H 0.055 0.945 49 H 0.054 0.946 50 H 0.172 0.828 51 H 0.145 0.855 52 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.119 -1.736 19.069 21.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.074 3.926 3 H 0.129 0.871 4 C -0.196 4.196 5 C 0.302 3.698 6 O -0.418 6.418 7 N -0.369 5.369 8 C 0.019 3.981 9 C -0.085 4.085 10 C -0.148 4.148 11 C -0.158 4.158 12 C -0.177 4.177 13 C 0.062 3.938 14 H 0.074 0.926 15 N -0.309 5.309 16 C -0.348 4.348 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.745 3.255 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.013 3.987 25 C -0.169 4.169 26 N -0.148 5.148 27 C -0.090 4.090 28 C -0.308 4.308 29 C -0.145 4.145 30 N -0.119 5.119 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.235 0.765 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.136 0.864 47 H 0.023 0.977 48 H 0.073 0.927 49 H 0.072 0.928 50 H 0.189 0.811 51 H 0.163 0.837 52 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 8.886 0.009 18.260 20.308 hybrid contribution -0.615 -0.992 -0.289 1.202 sum 8.272 -0.983 17.971 19.808 Atomic orbital electron populations 1.22337 0.92004 1.03115 1.05221 1.20948 0.95381 0.96896 0.79332 0.87079 1.22077 1.04011 1.00866 0.92656 1.20155 0.79562 0.85661 0.84422 1.90701 1.39980 1.24551 1.86597 1.46050 1.57165 1.27797 1.05853 1.21402 1.00544 0.94134 0.81970 1.21890 0.94561 0.97267 0.94781 1.22145 0.94272 1.00332 0.98061 1.21993 0.98202 0.99338 0.96224 1.22710 0.95005 1.01462 0.98503 1.21168 0.88842 0.94617 0.89218 0.92556 1.44473 1.28993 1.03181 1.54233 1.19047 1.03161 0.92943 1.19600 0.90479 1.24769 0.99481 0.95510 1.00878 1.69647 1.37081 1.02140 1.48134 0.86150 0.81444 0.77522 0.80386 1.21229 1.21608 1.21140 1.21816 1.01714 0.86789 0.88343 1.22784 0.98867 0.93654 1.01631 1.48996 1.19147 1.24097 1.22563 1.22541 0.99896 0.91150 0.95421 1.21513 0.99470 1.06559 1.03288 1.23891 0.99350 0.94030 0.97238 1.77388 1.02839 1.23960 1.07702 0.87703 0.92044 0.91653 0.88232 0.88113 0.76531 0.91748 0.90762 0.91836 0.92451 0.92588 0.92628 0.92787 0.91312 0.93674 0.86406 0.97650 0.92654 0.92754 0.81114 0.83677 0.80200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 8.58 37.16 0.32 -1.23 16 2 C 0.18 1.75 3.05 -67.93 -0.21 1.54 16 3 H 0.11 1.28 7.96 -51.93 -0.41 0.86 16 4 C -0.15 -1.41 5.50 -27.89 -0.15 -1.56 16 5 C 0.52 6.25 7.55 -10.98 -0.08 6.17 16 6 O -0.54 -8.35 13.96 5.55 0.08 -8.27 16 7 N -0.72 -8.53 4.88 -60.29 -0.29 -8.82 16 8 C 0.14 2.13 4.27 -4.04 -0.02 2.11 16 9 C -0.08 -1.31 0.72 -153.20 -0.11 -1.42 16 10 C -0.11 -1.46 5.60 -26.10 -0.15 -1.60 16 11 C -0.12 -1.66 6.79 -25.93 -0.18 -1.84 16 12 C -0.14 -2.40 6.43 -25.87 -0.17 -2.57 16 13 C 0.17 3.32 3.40 -66.73 -0.23 3.09 16 14 H 0.06 1.12 7.89 -51.93 -0.41 0.71 16 15 N -0.59 -14.16 2.94 -163.25 -0.48 -14.64 16 16 C -0.22 -5.89 10.32 -15.06 -0.16 -6.04 16 17 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 18 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 19 N -0.92 -26.10 10.06 55.49 0.56 -25.54 16 20 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.14 3.19 5.92 -3.28 -0.02 3.17 16 25 C -0.13 -2.26 5.76 -25.84 -0.15 -2.41 16 26 N -0.37 -3.77 3.53 -54.86 -0.19 -3.96 16 27 C 0.06 0.48 10.59 -17.22 -0.18 0.30 16 28 C -0.28 -2.32 10.80 -40.01 -0.43 -2.75 16 29 C 0.04 0.38 12.02 -17.37 -0.21 0.17 16 30 N -0.30 -3.51 12.58 30.63 0.39 -3.12 16 31 H 0.10 1.18 5.95 -51.93 -0.31 0.87 16 32 H 0.06 0.46 7.15 -51.93 -0.37 0.09 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.40 3.93 7.84 -40.82 -0.32 3.61 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.06 0.80 7.01 -51.93 -0.36 0.44 16 40 H 0.06 0.67 7.48 -51.93 -0.39 0.28 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 1.37 7.89 -51.93 -0.41 0.96 16 45 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.12 3.11 5.51 -51.93 -0.29 2.83 16 47 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 16 48 H 0.05 0.95 7.68 -51.93 -0.40 0.56 16 49 H 0.05 0.82 7.04 -51.93 -0.37 0.46 16 50 H 0.17 0.99 7.26 -52.48 -0.38 0.61 16 51 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 52 H 0.18 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 403.81 15.07 6.09 6.09 Total: -1.00 -31.48 403.81 -9.71 -41.19 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -8.61 Total: 5.63 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -2.21 Total: -5.26 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -0.02 Total: -56.09 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.08 Total: -8.27 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.48 -9.71 -41.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107600697.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.568 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds