Wall clock time and date at job start Wed Apr 1 2020 05:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47205 * 2 1 4 4 C 1.52989 * 109.47186 * 239.99362 * 2 1 3 5 5 C 1.50704 * 109.47322 * 65.00367 * 4 2 1 6 6 O 1.21284 * 119.99467 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00336 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99811 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46971 * 179.97438 * 8 7 5 10 10 C 1.53558 * 111.62060 * 299.87995 * 9 8 7 11 11 C 1.53653 * 107.09752 * 241.75031 * 10 9 8 12 12 C 1.53896 * 105.92998 * 340.08770 * 11 10 9 13 13 C 1.53749 * 105.45583 * 28.24547 * 12 11 10 14 14 H 1.08995 * 110.99225 * 96.13308 * 13 12 11 15 15 N 1.46975 * 109.57965 * 219.06559 * 13 12 11 16 16 C 1.36935 * 126.36004 * 267.64465 * 15 13 12 17 17 H 1.08002 * 120.00324 * 359.97438 * 16 15 13 18 18 C 1.38821 * 119.99684 * 179.97438 * 16 15 13 19 19 N 1.31616 * 119.99899 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99950 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46936 * 60.00394 * 20 18 16 22 22 H 1.48500 * 109.47050 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47222 * 300.00523 * 20 18 16 24 24 C 1.47108 * 107.27269 * 87.62221 * 15 13 12 25 25 C 1.53822 * 106.31877 * 29.69080 * 24 15 13 26 26 N 1.46507 * 109.46736 * 119.99458 * 2 1 3 27 27 C 1.34948 * 126.03749 * 35.00192 * 26 2 1 28 28 C 1.35312 * 107.74615 * 179.97438 * 27 26 2 29 29 C 1.39870 * 107.91844 * 0.02562 * 28 27 26 30 30 N 1.30834 * 108.20614 * 359.73866 * 29 28 27 31 31 H 1.08995 * 109.46917 * 59.99903 * 1 2 3 32 32 H 1.08995 * 109.46833 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47016 * 300.00742 * 1 2 3 34 34 H 1.09002 * 109.47427 * 305.00709 * 4 2 1 35 35 H 1.09003 * 109.47782 * 185.00013 * 4 2 1 36 36 H 0.96995 * 119.99720 * 359.97438 * 7 5 4 37 37 H 1.09004 * 109.47182 * 59.99942 * 8 7 5 38 38 H 1.08999 * 109.47415 * 299.99782 * 8 7 5 39 39 H 1.08999 * 109.88770 * 122.41022 * 10 9 8 40 40 H 1.08997 * 109.97239 * 1.13985 * 10 9 8 41 41 H 1.09002 * 110.17342 * 220.94901 * 11 10 9 42 42 H 1.09002 * 110.16922 * 99.22543 * 11 10 9 43 43 H 1.08996 * 110.25072 * 147.24294 * 12 11 10 44 44 H 1.09002 * 110.25169 * 269.25160 * 12 11 10 45 45 H 0.97001 * 119.99842 * 179.97438 * 19 18 16 46 46 H 1.08997 * 110.08741 * 148.90446 * 24 15 13 47 47 H 1.09003 * 110.08573 * 270.41822 * 24 15 13 48 48 H 1.09000 * 110.23954 * 98.72582 * 25 24 15 49 49 H 1.08995 * 110.24317 * 220.71790 * 25 24 15 50 50 H 1.08004 * 126.12403 * 359.95293 * 27 26 2 51 51 H 1.07998 * 126.04289 * 179.97438 * 28 27 26 52 52 H 1.08008 * 125.89580 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6415 0.0569 -2.4766 6 8 1.0111 1.0868 -2.3633 7 7 1.9846 -0.3922 -3.7001 8 6 1.5966 0.3641 -4.8933 9 6 2.1067 -0.3572 -6.1425 10 6 3.6364 -0.4915 -6.1333 11 6 4.1645 0.2752 -7.3557 12 6 2.9715 0.4078 -8.3189 13 6 1.7207 0.4045 -7.4248 14 1 1.3913 1.4211 -7.2105 15 7 0.6530 -0.3690 -8.0744 16 6 -0.3231 0.1267 -8.8969 17 1 -0.3555 1.1826 -9.1213 18 6 -1.2711 -0.7282 -9.4424 19 7 -1.2320 -2.0150 -9.1686 20 14 -2.6032 -0.0520 -10.5639 21 1 -1.9756 0.5894 -11.7470 22 1 -3.4841 -1.1609 -11.0105 23 1 -3.4091 0.9530 -9.8252 24 6 0.8283 -1.7745 -7.6772 25 6 1.4707 -1.7519 -6.2797 26 7 2.0183 -0.6905 1.1963 27 6 1.4401 -1.7558 1.7897 28 6 2.1966 -2.0928 2.8598 29 6 3.2737 -1.2026 2.9229 30 7 3.1707 -0.3649 1.9232 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5140 0.8899 34 1 1.6053 -1.7199 -1.2950 35 1 3.1264 -0.7996 -1.2055 36 1 2.4884 -1.2161 -3.7906 37 1 2.0312 1.3627 -4.8478 38 1 0.5103 0.4423 -4.9367 39 1 3.9168 -1.5424 -6.2049 40 1 4.0427 -0.0580 -5.2195 41 1 4.9707 -0.2840 -7.8306 42 1 4.5176 1.2621 -7.0566 43 1 3.0365 1.3440 -8.8732 44 1 2.9460 -0.4376 -9.0065 45 1 -1.8946 -2.6122 -9.5495 46 1 -0.1389 -2.2754 -7.6364 47 1 1.4839 -2.2842 -8.3833 48 1 0.7100 -1.8966 -5.5126 49 1 2.2358 -2.5245 -6.2038 50 1 0.5355 -2.2505 1.4682 51 1 2.0026 -2.9049 3.5447 52 1 4.0573 -1.2084 3.6662 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107600697.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:30 Heat of formation + Delta-G solvation = 40.636597 kcal Electronic energy + Delta-G solvation = -30969.617143 eV Core-core repulsion = 26970.251160 eV Total energy + Delta-G solvation = -3999.365983 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.14449 -41.38833 -40.37320 -36.65654 -36.10147 -35.35815 -33.40894 -32.20273 -31.30240 -30.73223 -29.85655 -28.59885 -28.49395 -25.79184 -25.43389 -24.16776 -22.17098 -21.94040 -21.88118 -20.99978 -20.72410 -19.74531 -18.96222 -18.53944 -17.58378 -17.00692 -16.89957 -16.67998 -16.16418 -15.75130 -15.61918 -15.53326 -15.21774 -15.10574 -14.80986 -14.57945 -14.28202 -14.12188 -14.05035 -13.82805 -13.64087 -13.48249 -13.34891 -12.89775 -12.79053 -12.76654 -12.52354 -12.46960 -12.21745 -12.18458 -12.07331 -11.88341 -11.61658 -11.57507 -11.52411 -11.49049 -11.36049 -11.01125 -10.92305 -10.68647 -10.36798 -10.06091 -9.49135 -8.87099 -7.73326 -5.19521 1.01453 1.45077 1.45788 1.47446 1.53566 1.59661 2.01488 2.27559 2.49496 3.30722 3.44696 3.52747 3.61689 3.69737 3.72011 3.83981 3.99855 4.02088 4.14330 4.18215 4.31208 4.37320 4.44217 4.47548 4.49701 4.56530 4.66401 4.66769 4.73214 4.78608 4.82314 4.85067 4.89012 4.96593 4.98721 5.08753 5.14628 5.17116 5.19833 5.22498 5.27783 5.40653 5.45109 5.49941 5.52823 5.59528 5.69649 5.80956 5.89395 6.17114 6.40149 6.53583 6.83719 7.14133 7.22135 7.82692 8.47922 9.24645 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.002295 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.003976 B =12198.582476 C =13107.167930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.179 3.821 3 H 0.087 0.913 4 C -0.140 4.140 5 C 0.518 3.482 6 O -0.577 6.577 7 N -0.708 5.708 8 C 0.155 3.845 9 C -0.069 4.069 10 C -0.103 4.103 11 C -0.111 4.111 12 C -0.133 4.133 13 C 0.157 3.843 14 H 0.046 0.954 15 N -0.609 5.609 16 C -0.230 4.230 17 H 0.076 0.924 18 C -0.067 4.067 19 N -0.946 5.946 20 Si 0.975 3.025 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.280 1.280 24 C 0.141 3.859 25 C -0.116 4.116 26 N -0.374 5.374 27 C 0.053 3.947 28 C -0.284 4.284 29 C 0.037 3.963 30 N -0.343 5.343 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.415 0.585 37 H 0.064 0.936 38 H 0.040 0.960 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.052 0.948 44 H 0.039 0.961 45 H 0.246 0.754 46 H 0.082 0.918 47 H -0.019 1.019 48 H 0.055 0.945 49 H 0.086 0.914 50 H 0.199 0.801 51 H 0.168 0.832 52 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.827 -2.594 21.083 23.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.077 3.923 3 H 0.106 0.894 4 C -0.181 4.181 5 C 0.305 3.695 6 O -0.457 6.457 7 N -0.359 5.359 8 C 0.031 3.969 9 C -0.071 4.071 10 C -0.140 4.140 11 C -0.149 4.149 12 C -0.173 4.173 13 C 0.049 3.951 14 H 0.064 0.936 15 N -0.331 5.331 16 C -0.359 4.359 17 H 0.094 0.906 18 C -0.259 4.259 19 N -0.596 5.596 20 Si 0.803 3.197 21 H -0.207 1.207 22 H -0.219 1.219 23 H -0.206 1.206 24 C 0.015 3.985 25 C -0.154 4.154 26 N -0.157 5.157 27 C -0.092 4.092 28 C -0.313 4.313 29 C -0.148 4.148 30 N -0.164 5.164 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.129 0.871 36 H 0.252 0.748 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.099 0.901 47 H -0.001 1.001 48 H 0.074 0.926 49 H 0.104 0.896 50 H 0.215 0.785 51 H 0.185 0.815 52 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 10.643 -0.851 20.299 22.936 hybrid contribution -1.154 -0.687 -0.888 1.610 sum 9.489 -1.539 19.411 21.661 Atomic orbital electron populations 1.22242 0.91588 1.04130 1.04044 1.20808 0.95625 0.95972 0.79944 0.89441 1.21987 1.04682 1.01122 0.90311 1.20661 0.78559 0.85240 0.85072 1.90702 1.41542 1.26345 1.87093 1.45856 1.57163 1.28055 1.04872 1.21034 0.98401 0.94548 0.82895 1.21730 0.96726 0.95442 0.93163 1.22131 0.91421 1.01581 0.98878 1.21963 0.96733 1.00860 0.95355 1.22562 0.96026 1.00137 0.98545 1.21479 0.88364 0.94141 0.91090 0.93602 1.44700 1.29795 1.04267 1.54318 1.19366 1.03798 0.93054 1.19699 0.90600 1.25529 1.01693 0.95928 1.02772 1.69916 1.37578 1.02972 1.49132 0.85204 0.78951 0.76752 0.78763 1.20682 1.21945 1.20607 1.21599 0.99793 0.85965 0.91106 1.22628 0.99493 0.95658 0.97658 1.48968 1.19260 1.24754 1.22701 1.23081 1.00530 0.90439 0.95196 1.21871 0.98963 1.06896 1.03578 1.24419 1.00087 0.93441 0.96896 1.77350 1.04219 1.25671 1.09180 0.89944 0.89893 0.91705 0.85780 0.87052 0.74813 0.91749 0.94202 0.90215 0.89849 0.90903 0.90882 0.92965 0.94176 0.94435 0.90051 1.00101 0.92582 0.89574 0.78468 0.81454 0.77922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 8.58 71.98 0.62 -2.17 16 2 C 0.18 3.33 3.05 44.99 0.14 3.47 16 3 H 0.09 2.03 7.96 -2.39 -0.02 2.01 16 4 C -0.14 -2.20 5.50 29.85 0.16 -2.04 16 5 C 0.52 11.72 7.55 87.66 0.66 12.38 16 6 O -0.58 -17.74 13.96 -3.04 -0.04 -17.78 16 7 N -0.71 -15.17 4.88 -463.04 -2.26 -17.43 16 8 C 0.16 4.48 4.27 86.38 0.37 4.85 16 9 C -0.07 -2.07 0.72 -51.33 -0.04 -2.10 16 10 C -0.10 -2.32 5.60 31.00 0.17 -2.14 16 11 C -0.11 -2.75 6.79 31.12 0.21 -2.54 16 12 C -0.13 -4.60 6.43 31.15 0.20 -4.40 16 13 C 0.16 6.14 3.40 45.51 0.15 6.29 16 14 H 0.05 1.86 7.89 -2.39 -0.02 1.84 16 15 N -0.61 -30.34 2.94 -670.42 -1.97 -32.31 16 16 C -0.23 -12.79 10.32 84.04 0.87 -11.92 16 17 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 18 C -0.07 -3.78 5.49 84.86 0.47 -3.32 16 19 N -0.95 -55.77 10.06 21.65 0.22 -55.55 16 20 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 C 0.14 6.67 5.92 86.54 0.51 7.19 16 25 C -0.12 -3.88 5.76 31.17 0.18 -3.70 16 26 N -0.37 -7.05 3.53 -327.48 -1.15 -8.20 16 27 C 0.05 0.76 10.59 83.54 0.88 1.65 16 28 C -0.28 -3.94 10.80 21.99 0.24 -3.71 16 29 C 0.04 0.62 12.02 85.24 1.02 1.64 16 30 N -0.34 -7.64 12.58 -57.02 -0.72 -8.36 16 31 H 0.08 1.84 5.95 -2.39 -0.01 1.83 16 32 H 0.08 1.03 7.15 -2.39 -0.02 1.01 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 34 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.41 6.58 7.84 -92.71 -0.73 5.86 16 37 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.62 7.01 -2.39 -0.02 1.60 16 40 H 0.08 1.53 7.48 -2.39 -0.02 1.51 16 41 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.04 1.61 7.89 -2.39 -0.02 1.59 16 45 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 46 H 0.08 4.50 5.51 -2.39 -0.01 4.49 16 47 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 48 H 0.06 1.87 7.68 -2.39 -0.02 1.86 16 49 H 0.09 2.35 7.04 -2.39 -0.02 2.34 16 50 H 0.20 1.55 7.26 -2.91 -0.02 1.53 16 51 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 52 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -73.15 403.81 3.11 -70.04 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.19 Total: 22.23 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 6.82 Total: -0.57 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -5.88 Total: -121.85 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.04 Total: -17.78 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -73.15 3.11 -70.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107600697.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.675 kcal (2) G-P(sol) polarization free energy of solvation -73.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds