Wall clock time and date at job start Wed Apr 1 2020 04:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46802 * 2 1 4 4 C 1.50693 * 109.47426 * 120.00387 * 2 1 3 5 5 O 1.21281 * 119.99742 * 120.00074 * 4 2 1 6 6 N 1.34774 * 120.00187 * 300.00039 * 4 2 1 7 7 C 1.46501 * 119.99802 * 179.97438 * 6 4 2 8 8 C 1.53004 * 109.47045 * 180.02562 * 7 6 4 9 9 C 1.53440 * 111.21647 * 298.98701 * 8 7 6 10 10 C 1.53649 * 107.15969 * 242.09986 * 9 8 7 11 11 C 1.53904 * 105.86718 * 339.99993 * 10 9 8 12 12 C 1.53751 * 105.45125 * 28.28354 * 11 10 9 13 13 H 1.08999 * 110.52693 * 94.80863 * 12 11 10 14 14 N 1.46970 * 110.07025 * 218.81962 * 12 11 10 15 15 C 1.36937 * 126.36374 * 267.87040 * 14 12 11 16 16 H 1.08005 * 120.00221 * 344.72894 * 15 14 12 17 17 C 1.38812 * 120.00167 * 164.73001 * 15 14 12 18 18 N 1.31612 * 119.99921 * 351.67077 * 17 15 14 19 19 Si 1.86800 * 120.00131 * 171.66622 * 17 15 14 20 20 H 1.48497 * 109.47117 * 94.98068 * 19 17 15 21 21 H 1.48493 * 109.47231 * 214.98145 * 19 17 15 22 22 H 1.48503 * 109.47245 * 334.98454 * 19 17 15 23 23 C 1.47108 * 107.27285 * 87.87151 * 14 12 11 24 24 C 1.53895 * 111.24095 * 61.21187 * 8 7 6 25 25 C 1.50697 * 109.47053 * 240.01156 * 2 1 3 26 26 C 1.39873 * 126.03770 * 300.01721 * 25 2 1 27 27 N 1.30836 * 108.20234 * 180.02562 * 26 25 2 28 28 N 1.40078 * 108.20899 * 0.02562 * 27 26 25 29 29 C 1.46497 * 126.03845 * 179.97438 * 28 27 26 30 30 C 1.34952 * 107.92294 * 0.26440 * 28 27 26 31 31 H 1.08998 * 109.47672 * 59.99289 * 1 2 3 32 32 H 1.09001 * 109.46844 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46762 * 299.99041 * 1 2 3 34 34 H 0.96997 * 119.99879 * 0.02562 * 6 4 2 35 35 H 1.09001 * 109.47128 * 300.00281 * 7 6 4 36 36 H 1.08998 * 109.46930 * 60.00339 * 7 6 4 37 37 H 1.08992 * 109.90184 * 1.49003 * 9 8 7 38 38 H 1.08999 * 109.89692 * 122.72058 * 9 8 7 39 39 H 1.08998 * 110.17093 * 99.09596 * 10 9 8 40 40 H 1.08994 * 110.17316 * 220.82900 * 10 9 8 41 41 H 1.08996 * 110.24783 * 147.27357 * 11 10 9 42 42 H 1.08999 * 110.25103 * 269.28936 * 11 10 9 43 43 H 0.97000 * 120.00364 * 179.97438 * 18 17 15 44 44 H 1.09003 * 110.08261 * 148.91098 * 23 14 12 45 45 H 1.09004 * 110.08092 * 270.47652 * 23 14 12 46 46 H 1.09000 * 110.24646 * 243.81311 * 24 8 7 47 47 H 1.09004 * 110.24181 * 5.80929 * 24 8 7 48 48 H 1.08004 * 125.89664 * 359.97438 * 26 25 2 49 49 H 1.09000 * 109.47343 * 90.03195 * 29 28 27 50 50 H 1.08997 * 109.47517 * 330.02246 * 29 28 27 51 51 H 1.09007 * 109.47119 * 210.02306 * 29 28 27 52 52 H 1.08000 * 126.12208 * 179.73796 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.7297 -1.6965 1.1189 6 7 1.7069 -0.2501 2.4545 7 6 2.1948 -0.9412 3.6505 8 6 1.6845 -0.2204 4.8999 9 6 2.1942 1.2259 4.9538 10 6 3.0586 1.3551 6.2175 11 6 2.6441 0.1886 7.1319 12 6 2.1621 -0.9228 6.1852 13 1 2.9716 -1.6208 5.9719 14 7 0.9920 -1.6021 6.7591 15 6 1.0090 -2.7207 7.5487 16 1 1.8999 -3.3287 7.6049 17 6 -0.1189 -3.0734 8.2770 18 7 -1.1450 -2.2517 8.3401 19 14 -0.1804 -4.7145 9.1674 20 1 0.2389 -4.5274 10.5796 21 1 -1.5660 -5.2470 9.1288 22 1 0.7373 -5.6736 8.5016 23 6 -0.2008 -0.8569 6.3278 24 6 0.1466 -0.2228 4.9559 25 6 2.0323 -0.7101 -1.2306 26 6 1.7731 -2.0404 -1.5764 27 7 2.3777 -2.2936 -2.7087 28 7 3.0422 -1.1309 -3.1196 29 6 3.8429 -0.9805 -4.3372 30 6 2.8198 -0.1758 -2.1925 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8901 34 1 1.1489 0.5383 2.5436 35 1 1.8312 -1.9687 3.6502 36 1 3.2848 -0.9415 3.6506 37 1 2.7946 1.4408 4.0699 38 1 1.3511 1.9145 5.0090 39 1 4.1147 1.2741 5.9604 40 1 2.8641 2.3077 6.7101 41 1 3.4985 -0.1561 7.7143 42 1 1.8351 0.4974 7.7940 43 1 -1.9333 -2.4982 8.8487 44 1 -1.0487 -1.5343 6.2258 45 1 -0.4325 -0.0721 7.0479 46 1 -0.2348 0.7964 4.8946 47 1 -0.2594 -0.8276 4.1450 48 1 1.1775 -2.7384 -1.0066 49 1 3.2033 -0.6453 -5.1536 50 1 4.2922 -1.9388 -4.5974 51 1 4.6292 -0.2450 -4.1664 52 1 3.1996 0.8349 -2.2160 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107657777.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:17 Heat of formation + Delta-G solvation = 33.848094 kcal Electronic energy + Delta-G solvation = -31191.927862 eV Core-core repulsion = 27192.267508 eV Total energy + Delta-G solvation = -3999.660354 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.21820 -41.25536 -40.08211 -36.25084 -35.37245 -35.22033 -33.53832 -33.34296 -31.90161 -30.38611 -29.34074 -28.51070 -27.30348 -26.07393 -25.56133 -24.57402 -22.32132 -22.09421 -21.85889 -21.12931 -20.55436 -19.63631 -18.90393 -18.05835 -17.45562 -16.91841 -16.57302 -16.37154 -16.26873 -15.93503 -15.55499 -15.27186 -15.13232 -15.06652 -14.86785 -14.47416 -14.25034 -14.08386 -13.82423 -13.65143 -13.53451 -13.37174 -13.32509 -13.05044 -12.84567 -12.68194 -12.53180 -12.46187 -12.39139 -12.19236 -12.05322 -11.82721 -11.65652 -11.50135 -11.43726 -11.41799 -11.33568 -10.99241 -10.67129 -10.58854 -10.28304 -9.93621 -9.27419 -8.79412 -7.88751 -5.22369 1.01362 1.43517 1.44594 1.54074 1.75005 1.80485 1.82155 2.44735 2.50575 3.29720 3.56374 3.64905 3.74823 3.76140 3.88262 3.99815 4.06861 4.27294 4.32099 4.35569 4.41662 4.44476 4.48375 4.49926 4.55111 4.61306 4.68550 4.70527 4.72063 4.85350 4.90049 4.90742 4.91717 5.01439 5.08298 5.14055 5.19466 5.22684 5.24299 5.32776 5.40259 5.42706 5.49222 5.53530 5.61090 5.64600 5.68707 5.70152 5.81710 6.23175 6.26271 6.74885 6.78363 7.11275 7.44816 7.80055 8.50249 9.23926 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.002456 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.557044 B =11396.628068 C =12251.651621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.017 4.017 3 H 0.138 0.862 4 C 0.511 3.489 5 O -0.584 6.584 6 N -0.709 5.709 7 C 0.156 3.844 8 C -0.067 4.067 9 C -0.102 4.102 10 C -0.111 4.111 11 C -0.133 4.133 12 C 0.156 3.844 13 H 0.043 0.957 14 N -0.607 5.607 15 C -0.238 4.238 16 H 0.071 0.929 17 C -0.060 4.060 18 N -0.943 5.943 19 Si 0.970 3.030 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.273 1.273 23 C 0.177 3.823 24 C -0.119 4.119 25 C -0.236 4.236 26 C 0.059 3.941 27 N -0.346 5.346 28 N -0.383 5.383 29 C 0.094 3.906 30 C 0.070 3.930 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.415 0.585 35 H 0.032 0.968 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.037 0.963 43 H 0.247 0.753 44 H 0.027 0.973 45 H -0.006 1.006 46 H 0.094 0.906 47 H 0.059 0.941 48 H 0.164 0.836 49 H 0.089 0.911 50 H 0.081 0.919 51 H 0.117 0.883 52 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.533 15.338 -23.224 28.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.039 4.039 3 H 0.156 0.844 4 C 0.298 3.702 5 O -0.464 6.464 6 N -0.361 5.361 7 C 0.032 3.968 8 C -0.069 4.069 9 C -0.139 4.139 10 C -0.148 4.148 11 C -0.173 4.173 12 C 0.049 3.951 13 H 0.061 0.939 14 N -0.329 5.329 15 C -0.367 4.367 16 H 0.088 0.912 17 C -0.253 4.253 18 N -0.591 5.591 19 Si 0.798 3.202 20 H -0.213 1.213 21 H -0.219 1.219 22 H -0.198 1.198 23 C 0.052 3.948 24 C -0.157 4.157 25 C -0.248 4.248 26 C -0.126 4.126 27 N -0.168 5.168 28 N -0.165 5.165 29 C -0.046 4.046 30 C -0.077 4.077 31 H 0.102 0.898 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.252 0.748 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.046 0.954 45 H 0.012 0.988 46 H 0.112 0.888 47 H 0.077 0.923 48 H 0.181 0.819 49 H 0.108 0.892 50 H 0.100 0.900 51 H 0.135 0.865 52 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 8.223 13.624 -24.218 28.978 hybrid contribution -0.769 -0.859 1.974 2.286 sum 7.454 12.765 -22.244 26.707 Atomic orbital electron populations 1.21777 0.91347 1.02260 1.04081 1.19538 0.97638 1.00109 0.86591 0.84446 1.21313 0.79306 0.84184 0.85384 1.90701 1.39932 1.28393 1.87363 1.45864 1.53515 1.32231 1.04533 1.20973 0.97963 0.94612 0.83299 1.21681 0.95686 0.96527 0.92988 1.22129 1.00180 0.93075 0.98544 1.21963 0.99926 0.97482 0.95479 1.22553 0.99177 0.96963 0.98598 1.21446 0.89533 0.92461 0.91697 0.93936 1.44593 1.01939 1.29310 1.57066 1.19294 0.99140 0.99911 1.18394 0.91165 1.25601 0.97386 1.01821 1.00532 1.70120 1.06635 1.36582 1.45794 0.85197 0.76666 0.79890 0.78401 1.21278 1.21892 1.19825 1.21076 0.89608 0.92675 0.91465 1.22882 0.94227 1.01373 0.97250 1.19711 1.09655 0.94945 1.00439 1.23653 0.98689 0.96894 0.93339 1.77275 1.15287 1.07874 1.16404 1.48771 1.39906 1.07747 1.20081 1.22173 0.94954 1.04803 0.82653 1.22901 0.98195 0.97014 0.89571 0.89828 0.94025 0.90216 0.74779 0.94976 0.92153 0.89486 0.89883 0.90927 0.90828 0.93353 0.94396 0.94349 0.95435 0.98765 0.88771 0.92257 0.81891 0.89246 0.89990 0.86502 0.76644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.98 71.98 0.65 -1.22 16 2 C -0.02 -0.27 3.09 -12.29 -0.04 -0.30 16 3 H 0.14 1.16 8.11 -2.38 -0.02 1.14 16 4 C 0.51 12.67 7.11 87.66 0.62 13.30 16 5 O -0.58 -20.80 15.37 -3.03 -0.05 -20.85 16 6 N -0.71 -15.70 4.73 -463.06 -2.19 -17.89 16 7 C 0.16 4.67 4.23 86.38 0.37 5.03 16 8 C -0.07 -2.04 0.72 -51.37 -0.04 -2.07 16 9 C -0.10 -2.26 5.61 30.96 0.17 -2.08 16 10 C -0.11 -2.76 6.80 31.12 0.21 -2.55 16 11 C -0.13 -4.80 6.45 31.15 0.20 -4.59 16 12 C 0.16 6.29 3.39 45.51 0.15 6.45 16 13 H 0.04 1.78 7.85 -2.39 -0.02 1.76 16 14 N -0.61 -30.99 2.97 -667.96 -1.98 -32.97 16 15 C -0.24 -13.61 10.26 84.03 0.86 -12.75 16 16 H 0.07 3.95 7.84 -2.91 -0.02 3.93 16 17 C -0.06 -3.45 5.39 84.86 0.46 -2.99 16 18 N -0.94 -57.14 10.88 21.65 0.24 -56.91 16 19 Si 0.97 46.96 29.56 68.60 2.03 48.98 16 20 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 21 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 22 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 23 C 0.18 8.51 5.37 86.97 0.47 8.98 16 24 C -0.12 -3.94 5.81 31.61 0.18 -3.76 16 25 C -0.24 -4.85 4.36 -20.14 -0.09 -4.94 16 26 C 0.06 1.60 10.77 85.24 0.92 2.52 16 27 N -0.35 -9.50 12.57 -57.02 -0.72 -10.22 16 28 N -0.38 -7.24 4.01 -369.56 -1.48 -8.73 16 29 C 0.09 0.84 11.47 127.77 1.47 2.30 16 30 C 0.07 1.09 11.38 83.54 0.95 2.04 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.04 0.75 8.02 -2.39 -0.02 0.73 16 33 H 0.08 0.83 7.56 -2.39 -0.02 0.81 16 34 H 0.41 6.45 7.24 -92.71 -0.67 5.78 16 35 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.09 1.52 7.46 -2.39 -0.02 1.50 16 38 H 0.08 1.60 7.01 -2.39 -0.02 1.59 16 39 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.04 1.60 7.94 -2.39 -0.02 1.58 16 43 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 44 H 0.03 1.51 6.91 -2.39 -0.02 1.50 16 45 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 46 H 0.09 2.48 7.04 -2.39 -0.02 2.46 16 47 H 0.06 1.94 7.65 -2.39 -0.02 1.93 16 48 H 0.16 4.55 8.06 -2.91 -0.02 4.53 16 49 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 50 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.12 0.30 8.14 -2.38 -0.02 0.28 16 52 H 0.22 1.16 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -82.99 409.05 3.60 -79.39 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.23 Total: 15.83 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 7.52 Total: 3.36 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -6.14 Total: -126.71 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.05 Total: -20.85 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.98 kcal Total: -82.99 3.60 -79.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107657777.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.238 kcal (2) G-P(sol) polarization free energy of solvation -82.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds