Wall clock time and date at job start Wed Apr 1 2020 04:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46828 * 2 1 4 4 C 1.53006 * 109.46811 * 240.00037 * 2 1 3 5 5 C 1.50698 * 109.47184 * 65.00358 * 4 2 1 6 6 C 1.39867 * 126.04328 * 90.01912 * 5 4 2 7 7 N 1.30844 * 108.20399 * 179.97438 * 6 5 4 8 8 N 1.40084 * 108.20407 * 0.02562 * 7 6 5 9 9 C 1.46495 * 126.03861 * 180.02562 * 8 7 6 10 10 C 1.34952 * 107.92438 * 359.75972 * 8 7 6 11 11 C 1.50699 * 109.47130 * 120.00307 * 2 1 3 12 12 O 1.21280 * 120.00014 * 120.00210 * 11 2 1 13 13 N 1.34773 * 119.99755 * 299.99530 * 11 2 1 14 14 C 1.46501 * 119.99786 * 179.97438 * 13 11 2 15 15 C 1.54180 * 111.61591 * 299.02415 * 14 13 11 16 16 C 1.54077 * 104.66863 * 260.48186 * 15 14 13 17 17 C 1.54857 * 103.10283 * 322.89226 * 16 15 14 18 18 C 1.54184 * 104.29741 * 37.52919 * 17 16 15 19 19 H 1.09002 * 112.24835 * 98.79181 * 18 17 16 20 20 C 1.53796 * 109.12515 * 223.08337 * 18 17 16 21 21 N 1.47228 * 106.35415 * 132.67547 * 20 18 17 22 22 C 1.36937 * 126.69901 * 148.76113 * 21 20 18 23 23 H 1.07997 * 120.00035 * 180.02562 * 22 21 20 24 24 C 1.38810 * 120.00135 * 0.02983 * 22 21 20 25 25 N 1.31618 * 120.00076 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00289 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47185 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47614 * 119.99415 * 26 24 22 29 29 H 1.48494 * 109.47366 * 239.99964 * 26 24 22 30 30 C 1.47220 * 106.59646 * 328.76389 * 21 20 18 31 31 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46911 * 299.99883 * 1 2 3 33 33 H 1.09009 * 109.47170 * 60.00031 * 1 2 3 34 34 H 1.09001 * 109.47002 * 184.99763 * 4 2 1 35 35 H 1.08993 * 109.46955 * 305.00200 * 4 2 1 36 36 H 1.08000 * 125.89723 * 0.02562 * 6 5 4 37 37 H 1.09007 * 109.47347 * 90.02369 * 9 8 7 38 38 H 1.08999 * 109.47630 * 210.02529 * 9 8 7 39 39 H 1.08997 * 109.46953 * 330.02956 * 9 8 7 40 40 H 1.08002 * 126.12753 * 180.24058 * 10 8 7 41 41 H 0.96999 * 120.00431 * 0.02562 * 13 11 2 42 42 H 1.09000 * 110.46580 * 20.30440 * 15 14 13 43 43 H 1.09004 * 110.46213 * 142.88860 * 15 14 13 44 44 H 1.08998 * 111.10483 * 204.21411 * 16 15 14 45 45 H 1.09003 * 110.22732 * 81.15735 * 16 15 14 46 46 H 1.09002 * 110.46600 * 278.82501 * 17 16 15 47 47 H 1.09000 * 110.46619 * 156.23722 * 17 16 15 48 48 H 1.08997 * 110.08020 * 251.89510 * 20 18 17 49 49 H 1.08996 * 110.08020 * 13.45751 * 20 18 17 50 50 H 0.97005 * 120.00031 * 180.02562 * 25 24 22 51 51 H 1.09000 * 110.08024 * 272.00882 * 30 21 20 52 52 H 1.09006 * 110.07706 * 150.45820 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 6 2.3902 1.0665 -3.0902 7 7 1.7184 1.5023 -4.1250 8 7 0.5187 0.7832 -4.2023 9 6 -0.5258 0.9557 -5.2149 10 6 0.4978 -0.1006 -3.1827 11 6 2.0323 -0.7105 1.2304 12 8 2.7296 -1.6965 1.1191 13 7 1.7068 -0.2500 2.4545 14 6 2.1947 -0.9410 3.6506 15 6 1.6878 -2.3958 3.7126 16 6 0.4917 -2.3512 4.6829 17 6 0.9436 -1.3241 5.7502 18 6 1.7078 -0.2522 4.9476 19 1 1.0912 0.6207 4.7333 20 6 2.9875 0.1309 5.7098 21 7 4.0799 0.1099 4.7230 22 6 5.2018 0.8950 4.7272 23 1 5.9384 0.7885 3.9446 24 6 5.3924 1.8277 5.7375 25 7 4.4946 1.9578 6.6910 26 14 6.9225 2.8992 5.7429 27 1 7.7684 2.5602 4.5704 28 1 6.5262 4.3286 5.6711 29 1 7.6896 2.6604 6.9917 30 6 3.7304 -0.9200 3.7307 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8901 34 1 3.1263 -0.7995 -1.2057 35 1 1.6053 -1.7197 -1.2952 36 1 3.3565 1.4239 -2.7663 37 1 -0.3259 0.2959 -6.0593 38 1 -1.4954 0.7088 -4.7825 39 1 -0.5332 1.9907 -5.5565 40 1 -0.2913 -0.8060 -2.9676 41 1 1.1489 0.5385 2.5436 42 1 1.3810 -2.7349 2.7232 43 1 2.4584 -3.0508 4.1192 44 1 0.3170 -3.3272 5.1356 45 1 -0.4013 -2.0020 4.1645 46 1 1.6023 -1.7965 6.4789 47 1 0.0783 -0.8842 6.2461 48 1 2.8856 1.1298 6.1339 49 1 3.1833 -0.5936 6.5002 50 1 4.6276 2.6098 7.3968 51 1 4.1015 -1.8925 4.0541 52 1 4.1523 -0.6621 2.7593 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111917255.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:00 Heat of formation + Delta-G solvation = 60.935191 kcal Electronic energy + Delta-G solvation = -31439.528762 eV Core-core repulsion = 27441.042992 eV Total energy + Delta-G solvation = -3998.485770 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.41475 -40.22006 -38.29887 -35.08992 -34.49848 -33.44530 -33.05510 -31.39586 -30.35277 -29.34118 -28.03151 -27.56064 -25.81450 -24.70446 -24.55393 -23.15657 -21.26902 -21.04199 -20.23091 -20.14000 -18.97300 -18.73162 -17.23780 -16.95274 -16.29566 -15.72956 -15.62929 -15.22001 -14.91832 -14.63505 -14.45488 -14.33508 -13.77672 -13.60711 -13.45198 -13.34526 -13.20141 -12.93701 -12.63531 -12.49507 -12.45293 -12.33454 -11.92394 -11.60647 -11.44506 -11.26215 -11.18386 -11.07839 -10.92715 -10.75739 -10.67763 -10.58396 -10.54840 -10.21752 -10.16568 -9.89656 -9.71385 -9.59246 -9.46367 -9.20552 -8.70608 -8.48331 -8.46831 -6.81895 -5.60958 -3.05191 1.69681 2.32373 2.63817 3.04232 3.41259 3.47418 3.49688 3.59905 4.28021 4.50906 4.62161 4.78866 4.80083 4.88035 4.92653 4.98773 5.02621 5.05595 5.08775 5.28259 5.37140 5.41725 5.51102 5.51958 5.64585 5.72792 5.75916 5.81772 5.86751 5.89746 5.93259 5.99196 6.05721 6.12438 6.20250 6.22755 6.26247 6.30787 6.47522 6.50998 6.52085 6.61992 6.73584 6.81177 6.82095 6.90150 7.26252 7.49768 7.52460 7.65636 7.84078 7.98394 8.42866 8.66261 9.24862 9.85427 10.53305 11.40014 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011192 B = 0.002891 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.282168 B = 9682.356202 C =11476.935771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 H 0.095 0.905 4 C -0.020 4.020 5 C -0.226 4.226 6 C 0.054 3.946 7 N -0.300 5.300 8 N -0.381 5.381 9 C 0.103 3.897 10 C 0.054 3.946 11 C 0.516 3.484 12 O -0.540 6.540 13 N -0.705 5.705 14 C 0.162 3.838 15 C -0.116 4.116 16 C -0.123 4.123 17 C -0.113 4.113 18 C -0.113 4.113 19 H 0.073 0.927 20 C 0.139 3.861 21 N -0.598 5.598 22 C -0.212 4.212 23 H 0.078 0.922 24 C -0.015 4.015 25 N -0.923 5.923 26 Si 0.914 3.086 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 C 0.137 3.863 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.183 0.817 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.171 0.829 41 H 0.395 0.605 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.070 0.930 47 H 0.060 0.940 48 H 0.122 0.878 49 H 0.011 0.989 50 H 0.251 0.749 51 H 0.025 0.975 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.461 -4.798 -16.732 23.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 H 0.113 0.887 4 C -0.059 4.059 5 C -0.238 4.238 6 C -0.132 4.132 7 N -0.122 5.122 8 N -0.164 5.164 9 C -0.039 4.039 10 C -0.092 4.092 11 C 0.302 3.698 12 O -0.417 6.417 13 N -0.354 5.354 14 C 0.075 3.925 15 C -0.155 4.155 16 C -0.161 4.161 17 C -0.151 4.151 18 C -0.134 4.134 19 H 0.091 0.909 20 C 0.014 3.986 21 N -0.321 5.321 22 C -0.340 4.340 23 H 0.095 0.905 24 C -0.209 4.209 25 N -0.573 5.573 26 Si 0.745 3.255 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 C 0.010 3.990 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.200 0.800 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.188 0.812 41 H 0.229 0.771 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.078 0.922 48 H 0.139 0.861 49 H 0.029 0.971 50 H 0.062 0.938 51 H 0.042 0.958 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.947 -4.484 -17.791 23.665 hybrid contribution 0.441 0.410 0.742 0.955 sum -14.506 -4.074 -17.049 22.753 Atomic orbital electron populations 1.21775 0.93503 1.02216 1.02282 1.21301 0.97219 1.01155 0.93139 0.88673 1.19656 1.01859 0.96746 0.87615 1.20125 0.96593 1.04434 1.02602 1.23890 1.00192 0.96004 0.93103 1.77363 0.94042 1.19065 1.21683 1.48449 1.16046 1.28778 1.23105 1.21815 0.87815 1.04115 0.90124 1.22329 1.00131 0.96228 0.90489 1.20488 0.80118 0.84687 0.84491 1.90678 1.37683 1.26499 1.86843 1.46028 1.52905 1.31316 1.05189 1.21718 0.95872 0.91163 0.83715 1.22470 0.97756 0.95839 0.99416 1.22397 0.97858 0.98908 0.96943 1.22440 0.99385 0.95887 0.97389 1.23004 0.99661 0.96710 0.94011 0.90892 1.22067 0.82579 1.04033 0.89934 1.44596 1.21634 1.40065 1.25840 1.19155 0.95996 1.11315 1.07552 0.90461 1.24754 0.98896 1.00030 0.97252 1.69614 1.34538 1.38233 1.14887 0.85989 0.82101 0.80101 0.77317 1.20535 1.21813 1.21796 1.21643 0.90874 0.92569 0.93934 0.92333 0.92368 0.91806 0.90131 0.90888 0.79975 0.90941 0.89596 0.89405 0.81166 0.77058 0.91232 0.91128 0.92112 0.92388 0.91117 0.92155 0.86051 0.97084 0.93813 0.95759 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.80 37.16 0.33 -0.94 16 2 C -0.11 -1.22 2.71 -91.77 -0.25 -1.47 16 3 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 4 C -0.02 -0.22 4.52 -27.88 -0.13 -0.35 16 5 C -0.23 -2.36 4.81 -105.05 -0.51 -2.87 16 6 C 0.05 0.62 11.96 -17.36 -0.21 0.41 16 7 N -0.30 -3.65 12.58 30.63 0.39 -3.26 16 8 N -0.38 -3.61 4.01 -68.16 -0.27 -3.89 16 9 C 0.10 0.53 11.47 59.84 0.69 1.21 16 10 C 0.05 0.48 10.04 -17.22 -0.17 0.30 16 11 C 0.52 7.88 6.14 -10.99 -0.07 7.81 16 12 O -0.54 -9.98 13.49 5.56 0.07 -9.90 16 13 N -0.70 -10.93 5.12 -45.83 -0.23 -11.17 16 14 C 0.16 2.92 0.93 -129.89 -0.12 2.80 16 15 C -0.12 -1.88 5.60 -25.55 -0.14 -2.02 16 16 C -0.12 -1.69 6.86 -25.19 -0.17 -1.87 16 17 C -0.11 -1.74 6.38 -25.13 -0.16 -1.90 16 18 C -0.11 -2.08 3.67 -88.69 -0.33 -2.41 16 19 H 0.07 1.27 7.69 -51.93 -0.40 0.87 16 20 C 0.14 3.32 5.77 -3.23 -0.02 3.30 16 21 N -0.60 -15.48 3.39 -171.10 -0.58 -16.06 16 22 C -0.21 -5.98 10.34 -15.06 -0.16 -6.14 16 23 H 0.08 2.16 7.83 -52.49 -0.41 1.74 16 24 C -0.01 -0.41 5.49 -17.43 -0.10 -0.51 16 25 N -0.92 -26.67 10.08 55.49 0.56 -26.11 16 26 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 30 C 0.14 3.08 6.04 -3.24 -0.02 3.06 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.50 7.56 -51.93 -0.39 0.11 16 33 H 0.06 0.53 6.43 -51.92 -0.33 0.19 16 34 H 0.08 1.02 7.96 -51.93 -0.41 0.61 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.18 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.07 0.30 8.14 -51.92 -0.42 -0.13 16 38 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.40 5.37 7.70 -40.82 -0.31 5.06 16 42 H 0.07 1.14 6.66 -51.93 -0.35 0.79 16 43 H 0.07 1.20 7.23 -51.93 -0.38 0.83 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 1.16 7.17 -51.93 -0.37 0.79 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.12 3.26 5.45 -51.93 -0.28 2.98 16 49 H 0.01 0.28 7.12 -51.93 -0.37 -0.09 16 50 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 51 H 0.02 0.57 7.19 -51.93 -0.37 0.20 16 52 H 0.05 1.15 6.84 -51.93 -0.36 0.79 16 LS Contribution 401.61 15.07 6.05 6.05 Total: -1.00 -33.91 401.61 -9.09 -43.00 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -8.52 Total: 5.65 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -1.53 Total: -1.57 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.14 Total: -60.48 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.90 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.91 -9.09 -43.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111917255.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.934 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds