Wall clock time and date at job start Wed Apr 1 2020 04:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46828 * 2 1 4 4 C 1.53006 * 109.46811 * 240.00037 * 2 1 3 5 5 C 1.50698 * 109.47184 * 65.00358 * 4 2 1 6 6 C 1.39867 * 126.04328 * 90.01912 * 5 4 2 7 7 N 1.30844 * 108.20399 * 179.97438 * 6 5 4 8 8 N 1.40084 * 108.20407 * 0.02562 * 7 6 5 9 9 C 1.46495 * 126.03861 * 180.02562 * 8 7 6 10 10 C 1.34952 * 107.92438 * 359.75972 * 8 7 6 11 11 C 1.50699 * 109.47130 * 120.00307 * 2 1 3 12 12 O 1.21280 * 120.00014 * 120.00210 * 11 2 1 13 13 N 1.34773 * 119.99755 * 299.99530 * 11 2 1 14 14 C 1.46501 * 119.99786 * 179.97438 * 13 11 2 15 15 C 1.54180 * 111.61591 * 299.02415 * 14 13 11 16 16 C 1.54077 * 104.66863 * 260.48186 * 15 14 13 17 17 C 1.54857 * 103.10283 * 322.89226 * 16 15 14 18 18 C 1.54184 * 104.29741 * 37.52919 * 17 16 15 19 19 H 1.09002 * 112.24835 * 98.79181 * 18 17 16 20 20 C 1.53796 * 109.12515 * 223.08337 * 18 17 16 21 21 N 1.47228 * 106.35415 * 132.67547 * 20 18 17 22 22 C 1.36937 * 126.69901 * 148.76113 * 21 20 18 23 23 H 1.07997 * 120.00035 * 180.02562 * 22 21 20 24 24 C 1.38810 * 120.00135 * 0.02983 * 22 21 20 25 25 N 1.31618 * 120.00076 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00289 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47185 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47614 * 119.99415 * 26 24 22 29 29 H 1.48494 * 109.47366 * 239.99964 * 26 24 22 30 30 C 1.47220 * 106.59646 * 328.76389 * 21 20 18 31 31 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46911 * 299.99883 * 1 2 3 33 33 H 1.09009 * 109.47170 * 60.00031 * 1 2 3 34 34 H 1.09001 * 109.47002 * 184.99763 * 4 2 1 35 35 H 1.08993 * 109.46955 * 305.00200 * 4 2 1 36 36 H 1.08000 * 125.89723 * 0.02562 * 6 5 4 37 37 H 1.09007 * 109.47347 * 90.02369 * 9 8 7 38 38 H 1.08999 * 109.47630 * 210.02529 * 9 8 7 39 39 H 1.08997 * 109.46953 * 330.02956 * 9 8 7 40 40 H 1.08002 * 126.12753 * 180.24058 * 10 8 7 41 41 H 0.96999 * 120.00431 * 0.02562 * 13 11 2 42 42 H 1.09000 * 110.46580 * 20.30440 * 15 14 13 43 43 H 1.09004 * 110.46213 * 142.88860 * 15 14 13 44 44 H 1.08998 * 111.10483 * 204.21411 * 16 15 14 45 45 H 1.09003 * 110.22732 * 81.15735 * 16 15 14 46 46 H 1.09002 * 110.46600 * 278.82501 * 17 16 15 47 47 H 1.09000 * 110.46619 * 156.23722 * 17 16 15 48 48 H 1.08997 * 110.08020 * 251.89510 * 20 18 17 49 49 H 1.08996 * 110.08020 * 13.45751 * 20 18 17 50 50 H 0.97005 * 120.00031 * 180.02562 * 25 24 22 51 51 H 1.09000 * 110.08024 * 272.00882 * 30 21 20 52 52 H 1.09006 * 110.07706 * 150.45820 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 6 2.3902 1.0665 -3.0902 7 7 1.7184 1.5023 -4.1250 8 7 0.5187 0.7832 -4.2023 9 6 -0.5258 0.9557 -5.2149 10 6 0.4978 -0.1006 -3.1827 11 6 2.0323 -0.7105 1.2304 12 8 2.7296 -1.6965 1.1191 13 7 1.7068 -0.2500 2.4545 14 6 2.1947 -0.9410 3.6506 15 6 1.6878 -2.3958 3.7126 16 6 0.4917 -2.3512 4.6829 17 6 0.9436 -1.3241 5.7502 18 6 1.7078 -0.2522 4.9476 19 1 1.0912 0.6207 4.7333 20 6 2.9875 0.1309 5.7098 21 7 4.0799 0.1099 4.7230 22 6 5.2018 0.8950 4.7272 23 1 5.9384 0.7885 3.9446 24 6 5.3924 1.8277 5.7375 25 7 4.4946 1.9578 6.6910 26 14 6.9225 2.8992 5.7429 27 1 7.7684 2.5602 4.5704 28 1 6.5262 4.3286 5.6711 29 1 7.6896 2.6604 6.9917 30 6 3.7304 -0.9200 3.7307 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8901 34 1 3.1263 -0.7995 -1.2057 35 1 1.6053 -1.7197 -1.2952 36 1 3.3565 1.4239 -2.7663 37 1 -0.3259 0.2959 -6.0593 38 1 -1.4954 0.7088 -4.7825 39 1 -0.5332 1.9907 -5.5565 40 1 -0.2913 -0.8060 -2.9676 41 1 1.1489 0.5385 2.5436 42 1 1.3810 -2.7349 2.7232 43 1 2.4584 -3.0508 4.1192 44 1 0.3170 -3.3272 5.1356 45 1 -0.4013 -2.0020 4.1645 46 1 1.6023 -1.7965 6.4789 47 1 0.0783 -0.8842 6.2461 48 1 2.8856 1.1298 6.1339 49 1 3.1833 -0.5936 6.5002 50 1 4.6276 2.6098 7.3968 51 1 4.1015 -1.8925 4.0541 52 1 4.1523 -0.6621 2.7593 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111917255.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:59 Heat of formation + Delta-G solvation = 39.454350 kcal Electronic energy + Delta-G solvation = -31440.460241 eV Core-core repulsion = 27441.042992 eV Total energy + Delta-G solvation = -3999.417249 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.17765 -41.59002 -39.67036 -36.35655 -36.00041 -34.65916 -33.82948 -33.37099 -31.30639 -30.78960 -29.35827 -28.54005 -26.57859 -26.32577 -26.28896 -24.30740 -22.50419 -21.93593 -21.77949 -21.03326 -20.19449 -20.17007 -18.99241 -17.96929 -17.47703 -17.04929 -16.82842 -16.41513 -16.31608 -15.83206 -15.66918 -15.35308 -15.26297 -15.08163 -14.69160 -14.32443 -14.08385 -13.98095 -13.82244 -13.54344 -13.40627 -13.19315 -13.17039 -13.13750 -12.88428 -12.80157 -12.74991 -12.43000 -12.23379 -12.05445 -11.99989 -11.96498 -11.80529 -11.75988 -11.60983 -11.40798 -11.38248 -11.21388 -10.79445 -10.49342 -10.31324 -9.89581 -9.24350 -8.90901 -7.76054 -5.24264 0.98670 1.44890 1.45526 1.56126 1.74333 1.81058 1.82550 2.37231 2.47822 3.29455 3.48475 3.60385 3.68068 3.86331 3.89723 4.01829 4.04369 4.12561 4.17548 4.37517 4.39829 4.47237 4.47539 4.49537 4.56816 4.63588 4.65473 4.71876 4.73786 4.76989 4.87359 4.90750 4.93035 4.99694 5.01409 5.05629 5.09282 5.17048 5.26311 5.27893 5.31219 5.34507 5.43007 5.44282 5.52738 5.61823 5.71663 5.78919 5.85380 6.20515 6.36354 6.74130 6.76651 7.10410 7.43798 7.75122 8.42927 9.21894 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011192 B = 0.002891 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.282168 B = 9682.356202 C =11476.935771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 H 0.093 0.907 4 C -0.009 4.009 5 C -0.243 4.243 6 C 0.038 3.962 7 N -0.336 5.336 8 N -0.381 5.381 9 C 0.093 3.907 10 C 0.069 3.931 11 C 0.514 3.486 12 O -0.575 6.575 13 N -0.700 5.700 14 C 0.172 3.828 15 C -0.111 4.111 16 C -0.108 4.108 17 C -0.109 4.109 18 C -0.103 4.103 19 H 0.088 0.912 20 C 0.143 3.857 21 N -0.618 5.618 22 C -0.235 4.235 23 H 0.069 0.931 24 C -0.062 4.062 25 N -0.943 5.943 26 Si 0.979 3.021 27 H -0.274 1.274 28 H -0.286 1.286 29 H -0.290 1.290 30 C 0.137 3.863 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.184 0.816 37 H 0.084 0.916 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.207 0.793 41 H 0.407 0.593 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.055 0.945 47 H 0.086 0.914 48 H 0.093 0.907 49 H -0.012 1.012 50 H 0.249 0.751 51 H 0.010 0.990 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.640 -5.019 -17.866 26.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.118 4.118 3 H 0.111 0.889 4 C -0.048 4.048 5 C -0.254 4.254 6 C -0.147 4.147 7 N -0.159 5.159 8 N -0.163 5.163 9 C -0.047 4.047 10 C -0.078 4.078 11 C 0.302 3.698 12 O -0.455 6.455 13 N -0.351 5.351 14 C 0.084 3.916 15 C -0.150 4.150 16 C -0.145 4.145 17 C -0.147 4.147 18 C -0.124 4.124 19 H 0.106 0.894 20 C 0.017 3.983 21 N -0.342 5.342 22 C -0.364 4.364 23 H 0.087 0.913 24 C -0.254 4.254 25 N -0.593 5.593 26 Si 0.807 3.193 27 H -0.198 1.198 28 H -0.212 1.212 29 H -0.217 1.217 30 C 0.010 3.990 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.201 0.799 37 H 0.102 0.898 38 H 0.135 0.865 39 H 0.105 0.895 40 H 0.223 0.777 41 H 0.243 0.757 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.073 0.927 47 H 0.105 0.895 48 H 0.110 0.890 49 H 0.006 0.994 50 H 0.059 0.941 51 H 0.027 0.973 52 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -18.157 -4.693 -18.953 26.664 hybrid contribution 1.492 0.455 1.053 1.882 sum -16.666 -4.238 -17.901 24.822 Atomic orbital electron populations 1.21747 0.90821 1.03090 1.03343 1.21277 0.99287 1.00222 0.91024 0.88851 1.19482 1.00273 0.97041 0.88052 1.20040 0.97613 1.04856 1.02914 1.24057 1.00644 0.96587 0.93414 1.77301 0.95610 1.20617 1.22355 1.48817 1.15765 1.28077 1.23664 1.22186 0.87989 1.04578 0.89972 1.22808 1.00034 0.95672 0.89259 1.21192 0.79186 0.84233 0.85228 1.90664 1.39151 1.28311 1.87340 1.45951 1.52912 1.31644 1.04607 1.21450 0.92419 0.92935 0.84751 1.22403 0.98551 0.93772 1.00294 1.22339 0.97161 0.99517 0.95486 1.22398 0.99556 0.95342 0.97356 1.22884 0.97344 0.98383 0.93750 0.89400 1.21916 0.84693 1.01743 0.89915 1.44854 1.21770 1.40490 1.27057 1.19385 0.97098 1.12203 1.07734 0.91272 1.25537 1.01793 1.01161 0.96927 1.69861 1.35789 1.38506 1.15105 0.85005 0.78755 0.78285 0.77250 1.19844 1.21250 1.21718 1.21723 0.94486 0.90840 0.91902 0.91514 0.91576 0.90469 0.92679 0.90595 0.79908 0.89765 0.86461 0.89460 0.77662 0.75655 0.91019 0.92762 0.89981 0.89941 0.92661 0.89521 0.88959 0.99414 0.94083 0.97276 0.95521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 8.80 71.98 0.63 -1.34 16 2 C -0.10 -2.10 2.71 -11.54 -0.03 -2.13 16 3 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 4 C -0.01 -0.20 4.52 29.85 0.13 -0.07 16 5 C -0.24 -4.80 4.81 -20.14 -0.10 -4.90 16 6 C 0.04 0.86 11.96 85.23 1.02 1.88 16 7 N -0.34 -7.99 12.58 -57.02 -0.72 -8.70 16 8 N -0.38 -6.39 4.01 -369.57 -1.48 -7.87 16 9 C 0.09 0.69 11.47 127.77 1.47 2.15 16 10 C 0.07 1.03 10.04 83.54 0.84 1.87 16 11 C 0.51 15.42 6.14 87.66 0.54 15.96 16 12 O -0.58 -21.55 13.49 -3.03 -0.04 -21.59 16 13 N -0.70 -21.05 5.12 -417.29 -2.14 -23.19 16 14 C 0.17 6.15 0.93 4.85 0.00 6.16 16 15 C -0.11 -3.46 5.60 31.36 0.18 -3.28 16 16 C -0.11 -2.59 6.86 31.59 0.22 -2.37 16 17 C -0.11 -3.12 6.38 31.63 0.20 -2.91 16 18 C -0.10 -3.72 3.67 -9.54 -0.03 -3.75 16 19 H 0.09 2.91 7.69 -2.39 -0.02 2.89 16 20 C 0.14 7.02 5.77 86.51 0.50 7.52 16 21 N -0.62 -33.33 3.39 -695.23 -2.36 -35.69 16 22 C -0.24 -13.80 10.34 84.03 0.87 -12.93 16 23 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 24 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 25 N -0.94 -55.87 10.08 21.65 0.22 -55.66 16 26 Si 0.98 46.67 29.55 68.60 2.03 48.70 16 27 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 28 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 29 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 30 C 0.14 6.44 6.04 86.51 0.52 6.96 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.90 7.56 -2.39 -0.02 0.88 16 33 H 0.08 0.98 6.43 -2.38 -0.02 0.96 16 34 H 0.05 1.46 7.96 -2.39 -0.02 1.44 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 36 H 0.18 3.78 8.06 -2.91 -0.02 3.76 16 37 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 38 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.09 0.67 8.14 -2.39 -0.02 0.66 16 40 H 0.21 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.41 10.29 7.70 -92.71 -0.71 9.58 16 42 H 0.07 2.22 6.66 -2.39 -0.02 2.20 16 43 H 0.05 1.85 7.23 -2.38 -0.02 1.83 16 44 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.05 1.77 7.17 -2.39 -0.02 1.75 16 47 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.09 5.13 5.45 -2.39 -0.01 5.12 16 49 H -0.01 -0.63 7.12 -2.39 -0.02 -0.65 16 50 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 51 H 0.01 0.47 7.19 -2.39 -0.02 0.45 16 52 H 0.03 1.33 6.84 -2.38 -0.02 1.32 16 Total: -1.00 -77.46 401.61 3.14 -74.31 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.21 Total: 23.96 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 7.42 Total: 5.73 kcal Atomic # 7 Polarization: -124.63 SS G_CDS: -6.47 Total: -131.11 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.04 Total: -21.59 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -77.46 3.14 -74.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111917255.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.768 kcal (2) G-P(sol) polarization free energy of solvation -77.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds