Wall clock time and date at job start Wed Apr 1 2020 04:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47437 * 2 1 4 4 C 1.50700 * 109.46947 * 119.99824 * 2 1 3 5 5 O 1.21282 * 120.00329 * 113.84860 * 4 2 1 6 6 N 1.34781 * 119.99851 * 293.84752 * 4 2 1 7 7 C 1.48120 * 127.84327 * 183.99035 * 6 4 2 8 8 C 1.54673 * 104.52062 * 140.25267 * 7 6 4 9 9 H 1.08995 * 112.74782 * 262.22344 * 8 7 6 10 10 C 1.56291 * 108.88065 * 136.51059 * 8 7 6 11 11 C 1.54834 * 104.37381 * 223.70688 * 10 8 7 12 12 C 1.54846 * 102.73628 * 38.64420 * 11 10 8 13 13 C 1.54157 * 104.32519 * 321.80712 * 12 11 10 14 14 C 1.52995 * 111.82444 * 260.30086 * 13 12 11 15 15 N 1.46510 * 109.46827 * 298.61939 * 14 13 12 16 16 C 1.36937 * 119.99848 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99905 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99822 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00072 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99868 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47050 * 90.00202 * 20 18 16 22 22 H 1.48502 * 109.46463 * 209.99832 * 20 18 16 23 23 H 1.48496 * 109.47169 * 329.99895 * 20 18 16 24 24 C 1.48111 * 127.84424 * 4.31388 * 6 4 2 25 25 C 1.50697 * 109.47162 * 239.99526 * 2 1 3 26 26 C 1.35315 * 126.13028 * 274.97590 * 25 2 1 27 27 C 1.39863 * 107.92507 * 180.02562 * 26 25 2 28 28 N 1.30838 * 108.20226 * 0.02562 * 27 26 25 29 29 N 1.34949 * 126.12733 * 95.03056 * 25 2 1 30 30 C 1.46499 * 126.03636 * 359.95548 * 29 25 2 31 31 H 1.09004 * 109.47056 * 305.11779 * 1 2 3 32 32 H 1.09007 * 109.46917 * 65.11223 * 1 2 3 33 33 H 1.08994 * 109.47056 * 185.11222 * 1 2 3 34 34 H 1.09000 * 110.39005 * 259.09844 * 7 6 4 35 35 H 1.09003 * 110.39237 * 21.48690 * 7 6 4 36 36 H 1.08997 * 110.05102 * 105.17054 * 10 8 7 37 37 H 1.08999 * 110.92927 * 342.68295 * 10 8 7 38 38 H 1.08999 * 110.76045 * 280.33086 * 11 10 8 39 39 H 1.09003 * 110.75772 * 156.95430 * 11 10 8 40 40 H 1.09003 * 110.45679 * 203.09636 * 12 11 10 41 41 H 1.08998 * 110.45936 * 80.51869 * 12 11 10 42 42 H 1.08995 * 109.47490 * 58.61733 * 14 13 12 43 43 H 1.09003 * 109.47031 * 178.62375 * 14 13 12 44 44 H 0.96997 * 119.99946 * 359.97438 * 15 14 13 45 45 H 0.96997 * 120.00382 * 179.97438 * 19 18 16 46 46 H 1.09004 * 110.39411 * 338.50588 * 24 6 4 47 47 H 1.09000 * 110.39569 * 100.90103 * 24 6 4 48 48 H 1.08008 * 126.03562 * 0.07349 * 26 25 2 49 49 H 1.08000 * 125.90167 * 179.97438 * 27 26 25 50 50 H 1.08994 * 109.47548 * 270.02258 * 30 29 25 51 51 H 1.09000 * 109.47063 * 30.02810 * 30 29 25 52 52 H 1.09004 * 109.46917 * 150.02166 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.6348 -1.7574 1.1228 6 7 1.8120 -0.1821 2.4507 7 6 2.2928 -0.6842 3.7587 8 6 2.6817 0.5903 4.5441 9 1 3.7500 0.8021 4.5014 10 6 2.1529 0.4625 6.0093 11 6 1.5448 1.8519 6.3210 12 6 0.8690 2.2370 4.9821 13 6 1.8414 1.7226 3.9022 14 6 2.7225 2.8445 3.3492 15 7 1.8782 3.8638 2.7211 16 6 2.4497 4.9706 2.1522 17 1 3.5227 5.0923 2.1669 18 6 1.6498 5.9362 1.5566 19 7 2.1989 7.0002 1.0102 20 14 -0.2062 5.7253 1.5305 21 1 -0.7919 6.3457 2.7459 22 1 -0.7621 6.3843 0.3214 23 1 -0.5396 4.2785 1.5033 24 6 1.0286 1.0286 2.7888 25 6 2.0323 -0.7105 -1.2304 26 6 2.2089 -2.0453 -1.3647 27 6 2.6881 -2.2884 -2.6560 28 7 2.7959 -1.1406 -3.2747 29 7 2.3877 -0.1294 -2.3954 30 6 2.3525 1.3055 -2.6887 31 1 -0.3633 0.5912 0.8406 32 1 -0.3633 0.4325 -0.9323 33 1 -0.3633 -1.0235 0.0916 34 1 1.4978 -1.2229 4.2742 35 1 3.1621 -1.3274 3.6223 36 1 2.9787 0.2471 6.6872 37 1 1.3897 -0.3124 6.0816 38 1 2.3264 2.5666 6.5789 39 1 0.8066 1.7801 7.1198 40 1 0.7564 3.3188 4.9095 41 1 -0.0992 1.7450 4.8887 42 1 3.2910 3.2946 4.1630 43 1 3.4097 2.4352 2.6087 44 1 0.9145 3.7544 2.7075 45 1 1.6401 7.6748 0.5937 46 1 0.9423 1.6803 1.9193 47 1 0.0406 0.7514 3.1564 48 1 2.0135 -2.7914 -0.6085 49 1 2.9285 -3.2563 -3.0706 50 1 1.3788 1.5682 -3.1019 51 1 2.5215 1.8683 -1.7706 52 1 3.1314 1.5477 -3.4118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112358576.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:25 Heat of formation + Delta-G solvation = 63.737991 kcal Electronic energy + Delta-G solvation = -32476.381590 eV Core-core repulsion = 28478.017359 eV Total energy + Delta-G solvation = -3998.364231 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.39030 -40.54865 -38.71338 -34.99359 -34.71722 -34.15998 -32.88803 -31.78665 -30.13268 -29.60839 -28.75789 -26.61421 -26.23002 -25.74055 -24.68104 -23.23205 -22.11066 -21.14734 -20.43209 -20.17279 -18.89238 -18.67743 -17.83958 -17.02483 -16.42469 -15.92773 -15.52281 -15.38204 -15.27279 -14.63235 -14.60258 -14.35166 -14.11824 -13.81725 -13.62201 -13.37921 -13.20830 -13.04477 -12.85813 -12.76514 -12.58881 -12.36103 -12.27083 -12.07487 -11.99193 -11.82620 -11.65757 -11.40478 -11.07245 -11.04664 -10.84884 -10.73750 -10.66681 -10.55785 -10.48486 -10.38378 -10.15146 -9.68136 -9.65085 -9.18867 -9.01323 -8.71779 -8.32505 -7.34713 -5.86950 -3.23366 1.91533 2.49333 2.60663 2.91872 3.08774 3.22176 3.27628 3.35129 4.19817 4.33563 4.34762 4.47100 4.58613 4.65097 4.70375 4.94707 4.98559 5.09203 5.16689 5.19680 5.23960 5.25983 5.27229 5.34117 5.39429 5.45862 5.47212 5.50720 5.53458 5.56488 5.63381 5.65103 5.75288 5.80174 5.84236 5.89369 5.92317 5.97152 6.01390 6.02954 6.13796 6.28175 6.33055 6.35735 6.41688 6.59117 6.61201 6.81344 7.06898 7.52513 7.80979 7.89007 8.14160 8.31492 9.10002 9.81718 10.01471 11.31362 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008201 B = 0.004810 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3413.289486 B = 5820.386055 C = 8387.171746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.046 4.046 3 H 0.111 0.889 4 C 0.549 3.451 5 O -0.530 6.530 6 N -0.617 5.617 7 C 0.114 3.886 8 C -0.097 4.097 9 H 0.093 0.907 10 C -0.115 4.115 11 C -0.121 4.121 12 C -0.116 4.116 13 C -0.081 4.081 14 C 0.177 3.823 15 N -0.753 5.753 16 C -0.245 4.245 17 H 0.089 0.911 18 C 0.007 3.993 19 N -0.932 5.932 20 Si 0.879 3.121 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.102 3.898 25 C 0.090 3.910 26 C -0.234 4.234 27 C 0.034 3.966 28 N -0.299 5.299 29 N -0.369 5.369 30 C 0.095 3.905 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.033 0.967 43 H 0.026 0.974 44 H 0.360 0.640 45 H 0.260 0.740 46 H 0.090 0.910 47 H 0.073 0.927 48 H 0.154 0.846 49 H 0.180 0.820 50 H 0.075 0.925 51 H 0.091 0.909 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.519 -16.220 4.456 17.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.069 4.069 3 H 0.129 0.871 4 C 0.337 3.663 5 O -0.406 6.406 6 N -0.350 5.350 7 C -0.008 4.008 8 C -0.116 4.116 9 H 0.111 0.889 10 C -0.153 4.153 11 C -0.159 4.159 12 C -0.154 4.154 13 C -0.082 4.082 14 C 0.050 3.950 15 N -0.400 5.400 16 C -0.374 4.374 17 H 0.107 0.893 18 C -0.189 4.189 19 N -0.579 5.579 20 Si 0.710 3.290 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.021 4.021 25 C -0.038 4.038 26 C -0.263 4.263 27 C -0.150 4.150 28 N -0.121 5.121 29 N -0.152 5.152 30 C -0.047 4.047 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.044 0.956 44 H 0.193 0.807 45 H 0.070 0.930 46 H 0.109 0.891 47 H 0.091 0.909 48 H 0.172 0.828 49 H 0.197 0.803 50 H 0.094 0.906 51 H 0.110 0.890 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.669 -15.930 3.048 16.628 hybrid contribution -1.514 -0.148 0.617 1.642 sum -5.183 -16.078 3.664 17.286 Atomic orbital electron populations 1.21817 0.91140 1.03270 1.03543 1.19720 0.98019 1.00326 0.88836 0.87068 1.19631 0.79156 0.84769 0.82784 1.90698 1.41708 1.22659 1.85515 1.48884 1.52510 1.28288 1.05351 1.22519 0.99702 0.96088 0.82521 1.23187 1.00335 0.93612 0.94501 0.88876 1.22788 0.99923 0.97694 0.94853 1.22462 0.99821 0.96477 0.97103 1.22495 0.97103 1.02359 0.93424 1.22350 0.95823 0.95263 0.94762 1.20521 0.92044 0.87283 0.95156 1.42729 1.04317 1.23031 1.69878 1.19031 0.93935 0.95639 1.28839 0.89276 1.24654 0.97101 0.96652 1.00456 1.69692 1.34225 1.11066 1.42967 0.86643 0.87553 0.77249 0.77587 1.20968 1.21706 1.20393 1.22858 0.93965 0.85806 0.99455 1.20266 1.01772 0.93522 0.88193 1.21424 1.11870 0.94931 0.98033 1.23828 1.00290 0.96953 0.93972 1.77319 1.22498 0.95800 1.16483 1.48455 1.50655 1.06932 1.09155 1.21935 1.03789 0.75089 1.03863 0.90816 0.91226 0.91501 0.91020 0.90181 0.91683 0.91379 0.91140 0.91714 0.90076 0.91727 0.94928 0.95579 0.80688 0.92991 0.89145 0.90921 0.82794 0.80286 0.90641 0.89000 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.94 37.16 0.33 -1.23 16 2 C -0.05 -0.62 2.21 -92.92 -0.21 -0.82 16 3 H 0.11 1.54 6.61 -51.93 -0.34 1.20 16 4 C 0.55 8.02 7.16 -10.98 -0.08 7.94 16 5 O -0.53 -9.01 13.86 5.56 0.08 -8.94 16 6 N -0.62 -7.98 3.31 -169.21 -0.56 -8.54 16 7 C 0.11 1.28 6.60 -2.27 -0.01 1.27 16 8 C -0.10 -1.06 3.70 -86.96 -0.32 -1.38 16 9 H 0.09 1.08 7.88 -51.93 -0.41 0.67 16 10 C -0.11 -1.03 6.41 -24.00 -0.15 -1.18 16 11 C -0.12 -1.22 6.90 -24.79 -0.17 -1.39 16 12 C -0.12 -1.38 5.69 -25.15 -0.14 -1.53 16 13 C -0.08 -1.04 0.62 -152.19 -0.09 -1.14 16 14 C 0.18 3.05 5.20 -4.04 -0.02 3.03 16 15 N -0.75 -15.76 4.39 -59.91 -0.26 -16.03 16 16 C -0.24 -6.39 10.47 -15.06 -0.16 -6.54 16 17 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 18 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 19 N -0.93 -27.81 13.97 55.49 0.78 -27.04 16 20 Si 0.88 20.29 27.74 -169.99 -4.71 15.58 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -5.75 6.52 56.52 0.37 -5.39 16 24 C 0.10 1.28 4.41 -2.46 -0.01 1.27 16 25 C 0.09 1.33 5.77 -82.26 -0.47 0.86 16 26 C -0.23 -3.47 9.17 -40.02 -0.37 -3.83 16 27 C 0.03 0.48 12.03 -17.37 -0.21 0.27 16 28 N -0.30 -4.69 12.58 30.62 0.39 -4.30 16 29 N -0.37 -5.48 4.01 -63.89 -0.26 -5.73 16 30 C 0.09 1.14 11.27 59.85 0.67 1.82 16 31 H 0.07 0.78 5.91 -51.93 -0.31 0.47 16 32 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.70 7.23 -51.93 -0.38 0.32 16 35 H 0.08 0.96 7.91 -51.93 -0.41 0.54 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.55 7.26 -51.93 -0.38 0.17 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 1.16 7.21 -51.93 -0.37 0.78 16 41 H 0.06 0.68 7.18 -51.93 -0.37 0.30 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.36 7.23 4.48 -40.82 -0.18 7.05 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.09 1.28 5.41 -51.93 -0.28 1.00 16 47 H 0.07 0.79 7.19 -51.93 -0.37 0.41 16 48 H 0.15 2.29 6.61 -52.48 -0.35 1.94 16 49 H 0.18 1.85 8.06 -52.49 -0.42 1.43 16 50 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.09 1.09 6.98 -51.93 -0.36 0.73 16 52 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 398.20 15.07 6.00 6.00 Total: -1.00 -32.51 398.20 -8.40 -40.91 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -8.33 Total: 10.58 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -1.51 Total: -2.49 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: 0.08 Total: -61.64 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.08 Total: -8.94 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.71 Total: 15.58 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.51 -8.40 -40.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112358576.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.650 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds