Wall clock time and date at job start Wed Apr 1 2020 04:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47437 * 2 1 4 4 C 1.50700 * 109.46947 * 119.99824 * 2 1 3 5 5 O 1.21282 * 120.00329 * 113.84860 * 4 2 1 6 6 N 1.34781 * 119.99851 * 293.84752 * 4 2 1 7 7 C 1.48120 * 127.84327 * 183.99035 * 6 4 2 8 8 C 1.54673 * 104.52062 * 140.25267 * 7 6 4 9 9 H 1.08995 * 112.74782 * 262.22344 * 8 7 6 10 10 C 1.56291 * 108.88065 * 136.51059 * 8 7 6 11 11 C 1.54834 * 104.37381 * 223.70688 * 10 8 7 12 12 C 1.54846 * 102.73628 * 38.64420 * 11 10 8 13 13 C 1.54157 * 104.32519 * 321.80712 * 12 11 10 14 14 C 1.52995 * 111.82444 * 260.30086 * 13 12 11 15 15 N 1.46510 * 109.46827 * 298.61939 * 14 13 12 16 16 C 1.36937 * 119.99848 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99905 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99822 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00072 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99868 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47050 * 90.00202 * 20 18 16 22 22 H 1.48502 * 109.46463 * 209.99832 * 20 18 16 23 23 H 1.48496 * 109.47169 * 329.99895 * 20 18 16 24 24 C 1.48111 * 127.84424 * 4.31388 * 6 4 2 25 25 C 1.50697 * 109.47162 * 239.99526 * 2 1 3 26 26 C 1.35315 * 126.13028 * 274.97590 * 25 2 1 27 27 C 1.39863 * 107.92507 * 180.02562 * 26 25 2 28 28 N 1.30838 * 108.20226 * 0.02562 * 27 26 25 29 29 N 1.34949 * 126.12733 * 95.03056 * 25 2 1 30 30 C 1.46499 * 126.03636 * 359.95548 * 29 25 2 31 31 H 1.09004 * 109.47056 * 305.11779 * 1 2 3 32 32 H 1.09007 * 109.46917 * 65.11223 * 1 2 3 33 33 H 1.08994 * 109.47056 * 185.11222 * 1 2 3 34 34 H 1.09000 * 110.39005 * 259.09844 * 7 6 4 35 35 H 1.09003 * 110.39237 * 21.48690 * 7 6 4 36 36 H 1.08997 * 110.05102 * 105.17054 * 10 8 7 37 37 H 1.08999 * 110.92927 * 342.68295 * 10 8 7 38 38 H 1.08999 * 110.76045 * 280.33086 * 11 10 8 39 39 H 1.09003 * 110.75772 * 156.95430 * 11 10 8 40 40 H 1.09003 * 110.45679 * 203.09636 * 12 11 10 41 41 H 1.08998 * 110.45936 * 80.51869 * 12 11 10 42 42 H 1.08995 * 109.47490 * 58.61733 * 14 13 12 43 43 H 1.09003 * 109.47031 * 178.62375 * 14 13 12 44 44 H 0.96997 * 119.99946 * 359.97438 * 15 14 13 45 45 H 0.96997 * 120.00382 * 179.97438 * 19 18 16 46 46 H 1.09004 * 110.39411 * 338.50588 * 24 6 4 47 47 H 1.09000 * 110.39569 * 100.90103 * 24 6 4 48 48 H 1.08008 * 126.03562 * 0.07349 * 26 25 2 49 49 H 1.08000 * 125.90167 * 179.97438 * 27 26 25 50 50 H 1.08994 * 109.47548 * 270.02258 * 30 29 25 51 51 H 1.09000 * 109.47063 * 30.02810 * 30 29 25 52 52 H 1.09004 * 109.46917 * 150.02166 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.6348 -1.7574 1.1228 6 7 1.8120 -0.1821 2.4507 7 6 2.2928 -0.6842 3.7587 8 6 2.6817 0.5903 4.5441 9 1 3.7500 0.8021 4.5014 10 6 2.1529 0.4625 6.0093 11 6 1.5448 1.8519 6.3210 12 6 0.8690 2.2370 4.9821 13 6 1.8414 1.7226 3.9022 14 6 2.7225 2.8445 3.3492 15 7 1.8782 3.8638 2.7211 16 6 2.4497 4.9706 2.1522 17 1 3.5227 5.0923 2.1669 18 6 1.6498 5.9362 1.5566 19 7 2.1989 7.0002 1.0102 20 14 -0.2062 5.7253 1.5305 21 1 -0.7919 6.3457 2.7459 22 1 -0.7621 6.3843 0.3214 23 1 -0.5396 4.2785 1.5033 24 6 1.0286 1.0286 2.7888 25 6 2.0323 -0.7105 -1.2304 26 6 2.2089 -2.0453 -1.3647 27 6 2.6881 -2.2884 -2.6560 28 7 2.7959 -1.1406 -3.2747 29 7 2.3877 -0.1294 -2.3954 30 6 2.3525 1.3055 -2.6887 31 1 -0.3633 0.5912 0.8406 32 1 -0.3633 0.4325 -0.9323 33 1 -0.3633 -1.0235 0.0916 34 1 1.4978 -1.2229 4.2742 35 1 3.1621 -1.3274 3.6223 36 1 2.9787 0.2471 6.6872 37 1 1.3897 -0.3124 6.0816 38 1 2.3264 2.5666 6.5789 39 1 0.8066 1.7801 7.1198 40 1 0.7564 3.3188 4.9095 41 1 -0.0992 1.7450 4.8887 42 1 3.2910 3.2946 4.1630 43 1 3.4097 2.4352 2.6087 44 1 0.9145 3.7544 2.7075 45 1 1.6401 7.6748 0.5937 46 1 0.9423 1.6803 1.9193 47 1 0.0406 0.7514 3.1564 48 1 2.0135 -2.7914 -0.6085 49 1 2.9285 -3.2563 -3.0706 50 1 1.3788 1.5682 -3.1019 51 1 2.5215 1.8683 -1.7706 52 1 3.1314 1.5477 -3.4118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112358576.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:24 Heat of formation + Delta-G solvation = 43.735700 kcal Electronic energy + Delta-G solvation = -32477.248954 eV Core-core repulsion = 28478.017359 eV Total energy + Delta-G solvation = -3999.231596 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.47704 -41.58295 -39.81764 -36.55114 -35.85135 -35.20103 -33.94008 -33.60562 -31.27528 -30.79873 -29.79395 -27.66424 -27.58895 -26.62126 -25.84555 -24.62184 -23.44855 -22.23173 -21.42235 -21.20265 -20.27190 -19.77842 -19.33481 -18.17925 -17.50526 -16.93701 -16.64152 -16.53216 -16.37047 -16.35706 -15.67896 -15.51990 -15.35193 -14.98287 -14.68377 -14.63224 -14.47074 -14.14356 -14.12564 -13.80157 -13.64791 -13.53160 -13.42857 -13.28443 -13.08316 -12.98419 -12.91036 -12.69655 -12.39556 -12.16737 -11.92614 -11.84681 -11.79836 -11.67917 -11.64888 -11.49986 -11.40405 -11.33918 -10.97624 -10.74435 -10.29036 -9.75452 -9.43979 -9.27436 -7.99355 -5.33652 0.81040 1.38441 1.44629 1.45674 1.49922 1.52080 1.85766 2.03434 2.51178 3.18153 3.30076 3.31670 3.38612 3.56653 3.66651 3.70938 3.92034 3.95743 3.98584 4.16393 4.22167 4.29675 4.31577 4.32880 4.39500 4.45192 4.53189 4.57832 4.59755 4.63726 4.68986 4.76152 4.80984 4.81744 4.85868 4.93623 4.96139 5.04433 5.07168 5.12515 5.19887 5.24381 5.27348 5.30470 5.43830 5.47155 5.57801 5.74640 5.78697 5.99751 6.22884 6.46219 6.70840 7.04794 7.11051 7.84432 8.07321 9.22269 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008201 B = 0.004810 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3413.289486 B = 5820.386055 C = 8387.171746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.043 4.043 3 H 0.103 0.897 4 C 0.545 3.455 5 O -0.559 6.559 6 N -0.615 5.615 7 C 0.114 3.886 8 C -0.093 4.093 9 H 0.080 0.920 10 C -0.103 4.103 11 C -0.119 4.119 12 C -0.115 4.115 13 C -0.077 4.077 14 C 0.179 3.821 15 N -0.747 5.747 16 C -0.233 4.233 17 H 0.047 0.953 18 C -0.059 4.059 19 N -0.985 5.985 20 Si 0.948 3.052 21 H -0.280 1.280 22 H -0.300 1.300 23 H -0.236 1.236 24 C 0.102 3.898 25 C 0.083 3.917 26 C -0.247 4.247 27 C 0.036 3.964 28 N -0.327 5.327 29 N -0.377 5.377 30 C 0.089 3.911 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.022 0.978 43 H 0.007 0.993 44 H 0.369 0.631 45 H 0.257 0.743 46 H 0.074 0.926 47 H 0.106 0.894 48 H 0.152 0.848 49 H 0.211 0.789 50 H 0.093 0.907 51 H 0.088 0.912 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.317 -18.365 6.114 20.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.066 4.066 3 H 0.120 0.880 4 C 0.333 3.667 5 O -0.438 6.438 6 N -0.348 5.348 7 C -0.007 4.007 8 C -0.113 4.113 9 H 0.098 0.902 10 C -0.141 4.141 11 C -0.156 4.156 12 C -0.153 4.153 13 C -0.078 4.078 14 C 0.053 3.947 15 N -0.393 5.393 16 C -0.364 4.364 17 H 0.065 0.935 18 C -0.251 4.251 19 N -0.636 5.636 20 Si 0.774 3.226 21 H -0.206 1.206 22 H -0.227 1.227 23 H -0.159 1.159 24 C -0.020 4.020 25 C -0.045 4.045 26 C -0.276 4.276 27 C -0.148 4.148 28 N -0.149 5.149 29 N -0.161 5.161 30 C -0.051 4.051 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.040 0.960 43 H 0.025 0.975 44 H 0.204 0.796 45 H 0.066 0.934 46 H 0.093 0.907 47 H 0.124 0.876 48 H 0.170 0.830 49 H 0.227 0.773 50 H 0.111 0.889 51 H 0.107 0.893 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.468 -18.109 4.751 19.807 hybrid contribution -0.469 0.551 0.142 0.737 sum -6.937 -17.558 4.892 19.502 Atomic orbital electron populations 1.21810 0.89140 1.03891 1.04314 1.19736 0.99601 0.99294 0.87931 0.87952 1.19814 0.78863 0.84548 0.83503 1.90681 1.43108 1.24018 1.85982 1.48924 1.52129 1.28212 1.05508 1.22680 1.00288 0.96000 0.81747 1.23153 0.99443 0.92557 0.96111 0.90177 1.22757 1.00789 0.97603 0.92945 1.22453 0.99831 0.96651 0.96700 1.22505 0.98073 1.00935 0.93771 1.22235 0.95895 0.94164 0.95548 1.20544 0.92326 0.87842 0.93989 1.42587 1.05000 1.22226 1.69501 1.18935 0.92296 0.97084 1.28078 0.93453 1.25480 1.02733 0.96265 1.00576 1.69898 1.36327 1.12490 1.44862 0.85526 0.80489 0.79558 0.77014 1.20582 1.22680 1.15934 1.22950 0.95137 0.85314 0.98590 1.20553 1.01513 0.93876 0.88583 1.21523 1.12624 0.95061 0.98428 1.24354 0.99097 0.97786 0.93585 1.77275 1.23664 0.96507 1.17470 1.48666 1.50645 1.07588 1.09166 1.22094 1.05031 0.74027 1.03964 0.89675 0.90708 0.90989 0.88280 0.91193 0.90587 0.89138 0.92677 0.89632 0.92618 0.89061 0.96040 0.97507 0.79632 0.93437 0.90727 0.87641 0.83045 0.77265 0.88896 0.89300 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 8.94 71.98 0.64 -2.05 16 2 C -0.04 -1.11 2.21 -12.29 -0.03 -1.13 16 3 H 0.10 2.82 6.61 -2.39 -0.02 2.80 16 4 C 0.54 15.34 7.16 87.66 0.63 15.97 16 5 O -0.56 -18.77 13.86 -3.04 -0.04 -18.81 16 6 N -0.62 -14.60 3.31 -807.65 -2.67 -17.28 16 7 C 0.11 2.25 6.60 86.64 0.57 2.82 16 8 C -0.09 -1.82 3.70 -8.42 -0.03 -1.85 16 9 H 0.08 1.78 7.88 -2.39 -0.02 1.77 16 10 C -0.10 -1.44 6.41 32.37 0.21 -1.23 16 11 C -0.12 -1.97 6.90 31.85 0.22 -1.75 16 12 C -0.12 -2.35 5.69 31.62 0.18 -2.17 16 13 C -0.08 -1.83 0.62 -50.68 -0.03 -1.86 16 14 C 0.18 6.20 5.20 86.38 0.45 6.65 16 15 N -0.75 -30.98 4.39 -343.44 -1.51 -32.49 16 16 C -0.23 -12.49 10.47 84.03 0.88 -11.61 16 17 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 18 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 19 N -0.99 -60.82 13.97 21.65 0.30 -60.52 16 20 Si 0.95 41.22 27.74 68.60 1.90 43.13 16 21 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 22 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 23 H -0.24 -8.51 6.52 99.48 0.65 -7.87 16 24 C 0.10 2.25 4.41 86.52 0.38 2.63 16 25 C 0.08 2.41 5.77 41.40 0.24 2.65 16 26 C -0.25 -7.24 9.17 21.99 0.20 -7.04 16 27 C 0.04 0.99 12.03 85.23 1.02 2.01 16 28 N -0.33 -10.14 12.58 -57.03 -0.72 -10.86 16 29 N -0.38 -11.14 4.01 -356.04 -1.43 -12.57 16 30 C 0.09 2.15 11.27 127.77 1.44 3.59 16 31 H 0.08 1.51 5.91 -2.39 -0.01 1.49 16 32 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.10 1.46 7.23 -2.39 -0.02 1.45 16 35 H 0.07 1.55 7.91 -2.39 -0.02 1.53 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.09 0.93 7.26 -2.39 -0.02 0.91 16 38 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 1.45 7.21 -2.39 -0.02 1.43 16 41 H 0.09 1.42 7.18 -2.39 -0.02 1.40 16 42 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 44 H 0.37 14.03 4.48 -92.71 -0.42 13.62 16 45 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 46 H 0.07 1.92 5.41 -2.39 -0.01 1.90 16 47 H 0.11 1.71 7.19 -2.39 -0.02 1.69 16 48 H 0.15 4.47 6.61 -2.91 -0.02 4.45 16 49 H 0.21 4.03 8.06 -2.91 -0.02 4.01 16 50 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 51 H 0.09 2.15 6.98 -2.39 -0.02 2.14 16 52 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -73.58 398.20 3.73 -69.85 By element: Atomic # 1 Polarization: 36.27 SS G_CDS: 0.45 Total: 36.72 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 7.44 Total: 2.82 kcal Atomic # 7 Polarization: -127.68 SS G_CDS: -6.03 Total: -133.71 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.04 Total: -18.81 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 1.90 Total: 43.13 kcal Total: -73.58 3.73 -69.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112358576.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.581 kcal (2) G-P(sol) polarization free energy of solvation -73.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds