Wall clock time and date at job start Wed Apr 1 2020 04:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47044 * 2 1 4 4 C 1.52996 * 109.47181 * 240.00270 * 2 1 3 5 5 C 1.50700 * 109.47629 * 64.99699 * 4 2 1 6 6 C 1.34670 * 126.58975 * 85.02391 * 5 4 2 7 7 N 1.34120 * 108.02159 * 179.97438 * 6 5 4 8 8 C 1.30499 * 109.25639 * 359.97438 * 7 6 5 9 9 N 1.35042 * 108.70021 * 359.77203 * 8 7 6 10 10 H 0.96999 * 126.39804 * 180.27265 * 9 8 7 11 11 C 1.50694 * 109.47429 * 119.99800 * 2 1 3 12 12 O 1.21277 * 120.00106 * 95.57027 * 11 2 1 13 13 N 1.34779 * 120.00318 * 275.58290 * 11 2 1 14 14 C 1.48114 * 127.84592 * 175.05095 * 13 11 2 15 15 C 1.54331 * 104.69499 * 140.27339 * 14 13 11 16 16 H 1.09004 * 111.85213 * 262.45268 * 15 14 13 17 17 C 1.54157 * 109.66222 * 137.80130 * 15 14 13 18 18 C 1.54845 * 104.32774 * 270.86803 * 17 15 14 19 19 C 1.54842 * 102.73334 * 321.81114 * 18 17 15 20 20 C 1.54164 * 104.32743 * 38.19005 * 19 18 17 21 21 C 1.52999 * 111.81857 * 213.80120 * 20 19 18 22 22 N 1.46500 * 109.46999 * 299.25538 * 21 20 19 23 23 C 1.36944 * 120.00041 * 179.72988 * 22 21 20 24 24 H 1.08002 * 119.99870 * 0.27361 * 23 22 21 25 25 C 1.38813 * 119.99902 * 180.27461 * 23 22 21 26 26 N 1.31620 * 120.00182 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 119.99711 * 179.97438 * 25 23 22 28 28 H 1.48492 * 109.47438 * 90.00217 * 27 25 23 29 29 H 1.48501 * 109.46991 * 210.00450 * 27 25 23 30 30 H 1.48507 * 109.47272 * 330.00036 * 27 25 23 31 31 C 1.48117 * 127.83907 * 355.07240 * 13 11 2 32 32 H 1.08994 * 109.47634 * 294.66968 * 1 2 3 33 33 H 1.09004 * 109.47092 * 54.66792 * 1 2 3 34 34 H 1.08998 * 109.47026 * 174.66362 * 1 2 3 35 35 H 1.09004 * 109.47045 * 184.99960 * 4 2 1 36 36 H 1.09000 * 109.46981 * 304.99391 * 4 2 1 37 37 H 1.08000 * 125.98555 * 359.96755 * 6 5 4 38 38 H 1.08002 * 125.65201 * 180.02562 * 8 7 6 39 39 H 1.09000 * 110.39209 * 21.46500 * 14 13 11 40 40 H 1.09005 * 110.48766 * 259.11999 * 14 13 11 41 41 H 1.09002 * 110.45875 * 29.57903 * 17 15 14 42 42 H 1.08999 * 110.46122 * 152.15944 * 17 15 14 43 43 H 1.09006 * 110.75579 * 80.12084 * 18 17 15 44 44 H 1.08997 * 110.76060 * 203.31247 * 18 17 15 45 45 H 1.08993 * 110.46227 * 279.47426 * 19 18 17 46 46 H 1.08996 * 110.45941 * 156.89986 * 19 18 17 47 47 H 1.09001 * 109.46797 * 179.25873 * 21 20 19 48 48 H 1.08991 * 109.47499 * 59.25755 * 21 20 19 49 49 H 0.96999 * 120.00253 * 0.02562 * 22 21 20 50 50 H 0.97003 * 119.99995 * 180.02562 * 26 25 23 51 51 H 1.08992 * 110.39491 * 100.92456 * 31 13 11 52 52 H 1.09004 * 110.39638 * 338.53053 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 6 2.3074 1.0926 -3.0220 7 7 1.6244 1.5035 -4.1006 8 6 0.5606 0.7616 -4.2448 9 7 0.5360 -0.1570 -3.2552 10 1 -0.1397 -0.8397 -3.1202 11 6 2.0323 -0.7103 1.2304 12 8 2.3306 -1.8845 1.1735 13 7 2.1500 -0.0409 2.3943 14 6 2.5245 -0.5832 3.7207 15 6 3.4443 0.4916 4.3376 16 1 4.4985 0.2510 4.2001 17 6 3.0902 0.6855 5.8254 18 6 1.9953 1.7804 5.8192 19 6 2.4792 2.7406 4.7049 20 6 3.0530 1.8077 3.6200 21 6 4.2442 2.4405 2.8979 22 7 3.8156 3.6774 2.2402 23 6 4.7186 4.4246 1.5319 24 1 5.7457 4.0998 1.4545 25 6 4.3137 5.5996 0.9135 26 7 3.0619 5.9953 1.0074 27 14 5.5456 6.6192 -0.0520 28 1 5.5579 6.1709 -1.4676 29 1 5.1592 8.0517 0.0102 30 1 6.8991 6.4458 0.5339 31 6 1.9336 1.4041 2.6372 32 1 -0.3634 0.4289 0.9338 33 1 -0.3633 0.5943 -0.8384 34 1 -0.3633 -1.0232 -0.0956 35 1 3.1263 -0.7994 -1.2056 36 1 1.6054 -1.7197 -1.2951 37 1 3.2299 1.5178 -2.6550 38 1 -0.1759 0.8625 -5.0283 39 1 3.0625 -1.5245 3.6081 40 1 1.6380 -0.7249 4.3391 41 1 2.7005 -0.2406 6.2481 42 1 3.9632 1.0228 6.3840 43 1 1.0242 1.3543 5.5670 44 1 1.9535 2.2905 6.7815 45 1 3.2549 3.4053 5.0851 46 1 1.6430 3.3167 4.3088 47 1 4.6270 1.7454 2.1505 48 1 5.0289 2.6660 3.6199 49 1 2.8932 3.9693 2.3099 50 1 2.7789 6.8161 0.5749 51 1 0.9550 1.5713 3.0868 52 1 2.0255 1.9638 1.7063 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112543785.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:32 Heat of formation + Delta-G solvation = 23.687277 kcal Electronic energy + Delta-G solvation = -32029.939310 eV Core-core repulsion = 28029.838349 eV Total energy + Delta-G solvation = -4000.100960 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.01839 -40.64391 -38.86288 -35.00333 -34.66389 -34.39545 -32.34175 -31.63342 -30.37597 -29.64341 -28.90691 -26.47434 -25.86934 -25.62285 -24.06744 -22.80858 -21.92297 -21.49863 -20.60280 -20.08520 -18.98550 -18.46194 -17.92230 -17.25577 -16.71516 -15.97031 -15.55635 -15.22803 -14.86826 -14.74642 -14.46719 -14.30299 -13.86520 -13.79509 -13.62403 -13.31393 -13.16856 -13.08381 -12.89341 -12.70896 -12.54108 -12.49362 -12.18523 -11.93825 -11.71314 -11.39672 -11.25255 -11.04679 -10.88541 -10.81905 -10.71470 -10.58896 -10.50700 -10.39595 -10.27881 -9.95601 -9.93967 -9.88222 -9.63583 -9.59492 -8.86307 -8.58313 -8.29671 -6.91692 -5.76037 -3.04312 2.04220 2.72148 2.99529 3.17228 3.28519 3.46964 3.52438 3.53515 4.33669 4.53451 4.62616 4.64750 4.74937 4.77056 4.82504 4.91462 5.05802 5.24037 5.26902 5.31076 5.32090 5.38524 5.42740 5.51977 5.54547 5.55655 5.62033 5.63188 5.69507 5.70780 5.78242 5.78806 5.90380 5.95281 5.98643 6.02458 6.03668 6.10720 6.19389 6.23986 6.31099 6.33870 6.44719 6.50552 6.58040 6.76333 6.81034 6.83712 7.37763 7.67195 7.72270 8.13753 8.24896 8.42766 9.54920 10.10351 10.45648 11.46573 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.006418 B = 0.005077 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4361.847332 B = 5513.208653 C = 9085.410822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 H 0.106 0.894 4 C -0.022 4.022 5 C -0.019 4.019 6 C -0.013 4.013 7 N -0.490 5.490 8 C 0.176 3.824 9 N -0.568 5.568 10 H 0.416 0.584 11 C 0.545 3.455 12 O -0.553 6.553 13 N -0.616 5.616 14 C 0.112 3.888 15 C -0.099 4.099 16 H 0.086 0.914 17 C -0.114 4.114 18 C -0.126 4.126 19 C -0.105 4.105 20 C -0.074 4.074 21 C 0.172 3.828 22 N -0.729 5.729 23 C -0.239 4.239 24 H 0.069 0.931 25 C -0.009 4.009 26 N -0.932 5.932 27 Si 0.903 3.097 28 H -0.288 1.288 29 H -0.292 1.292 30 H -0.283 1.283 31 C 0.109 3.891 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.172 0.828 38 H 0.205 0.795 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.018 0.982 48 H 0.022 0.978 49 H 0.383 0.617 50 H 0.255 0.745 51 H 0.069 0.931 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.465 -14.973 2.732 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.127 4.127 3 H 0.124 0.876 4 C -0.061 4.061 5 C -0.134 4.134 6 C -0.161 4.161 7 N -0.209 5.209 8 C -0.108 4.108 9 N -0.172 5.172 10 H 0.253 0.747 11 C 0.334 3.666 12 O -0.431 6.431 13 N -0.349 5.349 14 C -0.011 4.011 15 C -0.119 4.119 16 H 0.105 0.895 17 C -0.152 4.152 18 C -0.163 4.163 19 C -0.143 4.143 20 C -0.075 4.075 21 C 0.044 3.956 22 N -0.373 5.373 23 C -0.371 4.371 24 H 0.087 0.913 25 C -0.205 4.205 26 N -0.580 5.580 27 Si 0.734 3.266 28 H -0.216 1.216 29 H -0.218 1.218 30 H -0.209 1.209 31 C -0.014 4.014 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.189 0.811 38 H 0.221 0.779 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.036 0.964 48 H 0.040 0.960 49 H 0.217 0.783 50 H 0.065 0.935 51 H 0.087 0.913 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.897 -14.904 1.982 16.983 hybrid contribution -0.248 -0.049 0.029 0.255 sum -8.145 -14.953 2.011 17.145 Atomic orbital electron populations 1.21694 0.92819 1.01994 1.02910 1.21302 0.97630 1.01927 0.91876 0.87558 1.19814 1.02304 0.96909 0.87101 1.21157 0.91355 1.02871 0.98025 1.22247 1.02087 0.96945 0.94831 1.70307 1.05440 1.26346 1.18793 1.24937 1.00086 0.90417 0.95330 1.43288 1.21549 1.28860 1.23548 0.74708 1.20152 0.76925 0.86422 0.83083 1.90661 1.51150 1.16501 1.84805 1.48970 1.67780 1.10366 1.07763 1.22381 0.98054 0.97560 0.83097 1.22705 0.99772 0.94490 0.94884 0.89528 1.22330 0.99035 0.98769 0.95027 1.22520 0.98065 0.96739 0.99006 1.22300 1.00896 0.96866 0.94193 1.22255 0.96019 0.94235 0.94973 1.20577 0.92536 0.88685 0.93795 1.42322 1.10691 1.23061 1.61256 1.19174 0.91835 1.01959 1.24092 0.91349 1.24676 0.96262 0.98356 1.01230 1.69636 1.15010 1.24683 1.48695 0.86254 0.80383 0.79698 0.80260 1.21551 1.21839 1.20869 1.22672 0.97734 0.79959 1.01032 0.91914 0.91573 0.92455 0.89013 0.90378 0.81122 0.77876 0.90398 0.91330 0.91748 0.91264 0.91950 0.91651 0.90606 0.91165 0.96384 0.96020 0.78259 0.93539 0.91313 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.90 37.16 0.33 -1.16 16 2 C -0.11 -1.38 2.31 -91.78 -0.21 -1.59 16 3 H 0.11 1.58 6.67 -51.93 -0.35 1.24 16 4 C -0.02 -0.27 4.68 -27.89 -0.13 -0.40 16 5 C -0.02 -0.24 5.60 -81.60 -0.46 -0.70 16 6 C -0.01 -0.20 11.79 -17.82 -0.21 -0.41 16 7 N -0.49 -7.70 11.25 -14.67 -0.17 -7.86 16 8 C 0.18 1.97 13.04 -90.38 -1.18 0.79 16 9 N -0.57 -5.58 5.97 -10.30 -0.06 -5.65 16 10 H 0.42 2.66 8.96 -40.82 -0.37 2.30 16 11 C 0.54 8.14 7.03 -10.99 -0.08 8.07 16 12 O -0.55 -9.60 16.44 5.56 0.09 -9.51 16 13 N -0.62 -8.67 3.31 -169.43 -0.56 -9.23 16 14 C 0.11 1.39 6.49 -2.46 -0.02 1.37 16 15 C -0.10 -1.22 3.53 -88.30 -0.31 -1.53 16 16 H 0.09 1.11 7.88 -51.93 -0.41 0.70 16 17 C -0.11 -1.16 6.13 -25.15 -0.15 -1.32 16 18 C -0.13 -1.35 6.85 -24.79 -0.17 -1.52 16 19 C -0.10 -1.45 5.14 -25.15 -0.13 -1.58 16 20 C -0.07 -1.08 0.62 -152.19 -0.09 -1.17 16 21 C 0.17 3.27 5.14 -4.04 -0.02 3.25 16 22 N -0.73 -17.14 4.93 -59.91 -0.30 -17.44 16 23 C -0.24 -6.47 9.99 -15.06 -0.15 -6.62 16 24 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 25 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 26 N -0.93 -27.26 13.06 55.49 0.72 -26.54 16 27 Si 0.90 22.34 29.55 -169.99 -5.02 17.31 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 30 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 31 C 0.11 1.56 5.67 -2.46 -0.01 1.55 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.71 7.40 -51.93 -0.38 0.33 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.08 0.89 8.03 -51.93 -0.42 0.47 16 37 H 0.17 2.68 8.06 -52.49 -0.42 2.26 16 38 H 0.20 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.08 1.01 7.84 -51.93 -0.41 0.60 16 40 H 0.07 0.76 7.67 -51.93 -0.40 0.36 16 41 H 0.06 0.56 7.79 -51.93 -0.40 0.16 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 1.17 7.96 -51.93 -0.41 0.76 16 46 H 0.07 1.02 7.79 -51.93 -0.40 0.62 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.38 9.36 6.91 -40.82 -0.28 9.07 16 50 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 51 H 0.07 0.89 7.67 -51.93 -0.40 0.49 16 52 H 0.10 1.60 5.75 -51.93 -0.30 1.30 16 LS Contribution 409.96 15.07 6.18 6.18 Total: -1.00 -33.39 409.96 -10.91 -44.30 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -8.70 Total: 11.77 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -3.09 Total: -3.33 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: -0.36 Total: -66.72 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.39 -10.91 -44.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112543785.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.985 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds