Wall clock time and date at job start Wed Apr 1 2020 04:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47044 * 2 1 4 4 C 1.52996 * 109.47181 * 240.00270 * 2 1 3 5 5 C 1.50700 * 109.47629 * 64.99699 * 4 2 1 6 6 C 1.34670 * 126.58975 * 85.02391 * 5 4 2 7 7 N 1.34120 * 108.02159 * 179.97438 * 6 5 4 8 8 C 1.30499 * 109.25639 * 359.97438 * 7 6 5 9 9 N 1.35042 * 108.70021 * 359.77203 * 8 7 6 10 10 H 0.96999 * 126.39804 * 180.27265 * 9 8 7 11 11 C 1.50694 * 109.47429 * 119.99800 * 2 1 3 12 12 O 1.21277 * 120.00106 * 95.57027 * 11 2 1 13 13 N 1.34779 * 120.00318 * 275.58290 * 11 2 1 14 14 C 1.48114 * 127.84592 * 175.05095 * 13 11 2 15 15 C 1.54331 * 104.69499 * 140.27339 * 14 13 11 16 16 H 1.09004 * 111.85213 * 262.45268 * 15 14 13 17 17 C 1.54157 * 109.66222 * 137.80130 * 15 14 13 18 18 C 1.54845 * 104.32774 * 270.86803 * 17 15 14 19 19 C 1.54842 * 102.73334 * 321.81114 * 18 17 15 20 20 C 1.54164 * 104.32743 * 38.19005 * 19 18 17 21 21 C 1.52999 * 111.81857 * 213.80120 * 20 19 18 22 22 N 1.46500 * 109.46999 * 299.25538 * 21 20 19 23 23 C 1.36944 * 120.00041 * 179.72988 * 22 21 20 24 24 H 1.08002 * 119.99870 * 0.27361 * 23 22 21 25 25 C 1.38813 * 119.99902 * 180.27461 * 23 22 21 26 26 N 1.31620 * 120.00182 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 119.99711 * 179.97438 * 25 23 22 28 28 H 1.48492 * 109.47438 * 90.00217 * 27 25 23 29 29 H 1.48501 * 109.46991 * 210.00450 * 27 25 23 30 30 H 1.48507 * 109.47272 * 330.00036 * 27 25 23 31 31 C 1.48117 * 127.83907 * 355.07240 * 13 11 2 32 32 H 1.08994 * 109.47634 * 294.66968 * 1 2 3 33 33 H 1.09004 * 109.47092 * 54.66792 * 1 2 3 34 34 H 1.08998 * 109.47026 * 174.66362 * 1 2 3 35 35 H 1.09004 * 109.47045 * 184.99960 * 4 2 1 36 36 H 1.09000 * 109.46981 * 304.99391 * 4 2 1 37 37 H 1.08000 * 125.98555 * 359.96755 * 6 5 4 38 38 H 1.08002 * 125.65201 * 180.02562 * 8 7 6 39 39 H 1.09000 * 110.39209 * 21.46500 * 14 13 11 40 40 H 1.09005 * 110.48766 * 259.11999 * 14 13 11 41 41 H 1.09002 * 110.45875 * 29.57903 * 17 15 14 42 42 H 1.08999 * 110.46122 * 152.15944 * 17 15 14 43 43 H 1.09006 * 110.75579 * 80.12084 * 18 17 15 44 44 H 1.08997 * 110.76060 * 203.31247 * 18 17 15 45 45 H 1.08993 * 110.46227 * 279.47426 * 19 18 17 46 46 H 1.08996 * 110.45941 * 156.89986 * 19 18 17 47 47 H 1.09001 * 109.46797 * 179.25873 * 21 20 19 48 48 H 1.08991 * 109.47499 * 59.25755 * 21 20 19 49 49 H 0.96999 * 120.00253 * 0.02562 * 22 21 20 50 50 H 0.97003 * 119.99995 * 180.02562 * 26 25 23 51 51 H 1.08992 * 110.39491 * 100.92456 * 31 13 11 52 52 H 1.09004 * 110.39638 * 338.53053 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 6 2.3074 1.0926 -3.0220 7 7 1.6244 1.5035 -4.1006 8 6 0.5606 0.7616 -4.2448 9 7 0.5360 -0.1570 -3.2552 10 1 -0.1397 -0.8397 -3.1202 11 6 2.0323 -0.7103 1.2304 12 8 2.3306 -1.8845 1.1735 13 7 2.1500 -0.0409 2.3943 14 6 2.5245 -0.5832 3.7207 15 6 3.4443 0.4916 4.3376 16 1 4.4985 0.2510 4.2001 17 6 3.0902 0.6855 5.8254 18 6 1.9953 1.7804 5.8192 19 6 2.4792 2.7406 4.7049 20 6 3.0530 1.8077 3.6200 21 6 4.2442 2.4405 2.8979 22 7 3.8156 3.6774 2.2402 23 6 4.7186 4.4246 1.5319 24 1 5.7457 4.0998 1.4545 25 6 4.3137 5.5996 0.9135 26 7 3.0619 5.9953 1.0074 27 14 5.5456 6.6192 -0.0520 28 1 5.5579 6.1709 -1.4676 29 1 5.1592 8.0517 0.0102 30 1 6.8991 6.4458 0.5339 31 6 1.9336 1.4041 2.6372 32 1 -0.3634 0.4289 0.9338 33 1 -0.3633 0.5943 -0.8384 34 1 -0.3633 -1.0232 -0.0956 35 1 3.1263 -0.7994 -1.2056 36 1 1.6054 -1.7197 -1.2951 37 1 3.2299 1.5178 -2.6550 38 1 -0.1759 0.8625 -5.0283 39 1 3.0625 -1.5245 3.6081 40 1 1.6380 -0.7249 4.3391 41 1 2.7005 -0.2406 6.2481 42 1 3.9632 1.0228 6.3840 43 1 1.0242 1.3543 5.5670 44 1 1.9535 2.2905 6.7815 45 1 3.2549 3.4053 5.0851 46 1 1.6430 3.3167 4.3088 47 1 4.6270 1.7454 2.1505 48 1 5.0289 2.6660 3.6199 49 1 2.8932 3.9693 2.3099 50 1 2.7789 6.8161 0.5749 51 1 0.9550 1.5713 3.0868 52 1 2.0255 1.9638 1.7063 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112543785.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:30 Heat of formation + Delta-G solvation = 3.879603 kcal Electronic energy + Delta-G solvation = -32030.798235 eV Core-core repulsion = 28029.838349 eV Total energy + Delta-G solvation = -4000.959886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.01509 -41.79194 -40.03891 -36.43968 -36.03671 -35.60097 -33.44648 -33.33282 -31.43777 -30.91698 -30.19509 -27.47544 -27.30677 -26.71846 -25.62296 -24.20861 -23.20187 -22.47411 -21.62289 -21.11536 -20.18156 -19.69401 -19.15082 -18.81069 -17.95709 -17.08249 -16.80266 -16.60154 -16.19563 -15.90219 -15.73460 -15.39749 -15.16800 -15.02055 -14.94610 -14.75425 -14.57774 -14.37364 -13.99412 -13.76015 -13.70340 -13.48674 -13.34112 -13.12702 -13.06860 -12.96409 -12.75999 -12.38671 -12.23606 -12.15769 -12.05210 -11.78256 -11.69229 -11.66328 -11.52487 -11.45149 -11.33619 -10.95168 -10.94169 -10.93019 -10.76746 -9.74530 -9.34420 -8.95827 -7.93452 -5.19899 1.05585 1.46245 1.48980 1.53888 1.55133 1.92146 2.21107 2.28485 2.56315 3.24952 3.40249 3.45958 3.59148 3.66814 3.77933 3.86627 3.91269 4.13140 4.18012 4.20985 4.24324 4.26199 4.29088 4.36967 4.45423 4.49386 4.53716 4.60543 4.66978 4.68694 4.71793 4.76511 4.79372 4.81508 4.91861 4.97332 5.00606 5.06660 5.09489 5.15700 5.21067 5.29767 5.30952 5.32015 5.38202 5.47805 5.54067 5.54428 5.74347 6.29068 6.49491 6.60165 7.06700 7.14691 7.37545 8.11521 8.37587 9.29258 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.006418 B = 0.005077 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4361.847332 B = 5513.208653 C = 9085.410822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 H 0.080 0.920 4 C -0.014 4.014 5 C -0.006 4.006 6 C -0.054 4.054 7 N -0.543 5.543 8 C 0.194 3.806 9 N -0.551 5.551 10 H 0.436 0.564 11 C 0.542 3.458 12 O -0.577 6.577 13 N -0.617 5.617 14 C 0.112 3.888 15 C -0.093 4.093 16 H 0.079 0.921 17 C -0.106 4.106 18 C -0.115 4.115 19 C -0.104 4.104 20 C -0.071 4.071 21 C 0.174 3.826 22 N -0.733 5.733 23 C -0.242 4.242 24 H 0.067 0.933 25 C -0.063 4.063 26 N -0.960 5.960 27 Si 0.960 3.040 28 H -0.293 1.293 29 H -0.293 1.293 30 H -0.272 1.272 31 C 0.117 3.883 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.148 0.852 38 H 0.249 0.751 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.055 0.945 46 H 0.059 0.941 47 H 0.003 0.997 48 H 0.018 0.982 49 H 0.378 0.622 50 H 0.250 0.750 51 H 0.091 0.909 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.197 -16.779 3.809 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.123 4.123 3 H 0.098 0.902 4 C -0.054 4.054 5 C -0.122 4.122 6 C -0.201 4.201 7 N -0.262 5.262 8 C -0.090 4.090 9 N -0.156 5.156 10 H 0.277 0.723 11 C 0.332 3.668 12 O -0.458 6.458 13 N -0.349 5.349 14 C -0.010 4.010 15 C -0.113 4.113 16 H 0.097 0.903 17 C -0.143 4.143 18 C -0.152 4.152 19 C -0.142 4.142 20 C -0.072 4.072 21 C 0.048 3.952 22 N -0.376 5.376 23 C -0.374 4.374 24 H 0.085 0.915 25 C -0.256 4.256 26 N -0.611 5.611 27 Si 0.790 3.210 28 H -0.220 1.220 29 H -0.220 1.220 30 H -0.197 1.197 31 C -0.006 4.006 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.166 0.834 38 H 0.265 0.735 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.020 0.980 48 H 0.036 0.964 49 H 0.211 0.789 50 H 0.059 0.941 51 H 0.109 0.891 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.617 -16.746 3.100 19.558 hybrid contribution 0.329 0.485 -0.326 0.671 sum -9.288 -16.260 2.774 18.931 Atomic orbital electron populations 1.21655 0.90742 1.03155 1.03086 1.21243 0.99290 1.00156 0.91562 0.90163 1.19726 1.01525 0.97456 0.86647 1.20956 0.91701 1.01729 0.97851 1.22136 1.02664 0.98906 0.96372 1.70230 1.07574 1.28728 1.19695 1.25736 0.99106 0.88782 0.95405 1.43176 1.20999 1.28954 1.22472 0.72259 1.20395 0.76579 0.86176 0.83622 1.90644 1.52439 1.17499 1.85220 1.49034 1.67289 1.10186 1.08395 1.22547 0.99011 0.97079 0.82366 1.22677 0.99485 0.92701 0.96408 0.90300 1.22319 0.99133 0.99823 0.93047 1.22485 0.98696 0.95905 0.98148 1.22246 0.99878 0.97053 0.95027 1.22149 0.94381 0.95549 0.95169 1.20630 0.94572 0.86832 0.93188 1.42414 1.09981 1.24075 1.61152 1.19490 0.92282 1.02069 1.23547 0.91509 1.25341 0.97805 0.99709 1.02789 1.69763 1.16439 1.24948 1.49950 0.85346 0.79034 0.78010 0.78648 1.22009 1.21993 1.19699 1.22550 0.98586 0.79839 0.99636 0.91827 0.91351 0.90666 0.90530 0.88771 0.83397 0.73507 0.90784 0.88737 0.89083 0.90943 0.90474 0.90228 0.92660 0.92220 0.97955 0.96399 0.78887 0.94091 0.89145 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 8.90 71.98 0.64 -2.00 16 2 C -0.10 -2.65 2.31 -11.54 -0.03 -2.68 16 3 H 0.08 2.56 6.67 -2.39 -0.02 2.54 16 4 C -0.01 -0.36 4.68 29.85 0.14 -0.22 16 5 C -0.01 -0.15 5.60 40.95 0.23 0.08 16 6 C -0.05 -1.76 11.79 83.53 0.98 -0.78 16 7 N -0.54 -17.34 11.25 -200.32 -2.25 -19.59 16 8 C 0.19 4.02 13.04 180.26 2.35 6.37 16 9 N -0.55 -9.81 5.97 -186.49 -1.11 -10.92 16 10 H 0.44 4.23 8.96 -92.71 -0.83 3.40 16 11 C 0.54 16.04 7.03 87.65 0.62 16.66 16 12 O -0.58 -19.68 16.44 -3.02 -0.05 -19.73 16 13 N -0.62 -16.90 3.31 -808.35 -2.68 -19.58 16 14 C 0.11 2.53 6.49 86.52 0.56 3.09 16 15 C -0.09 -2.14 3.53 -9.29 -0.03 -2.17 16 16 H 0.08 1.95 7.88 -2.39 -0.02 1.93 16 17 C -0.11 -1.81 6.13 31.62 0.19 -1.62 16 18 C -0.11 -2.10 6.85 31.85 0.22 -1.89 16 19 C -0.10 -2.80 5.14 31.62 0.16 -2.64 16 20 C -0.07 -2.07 0.62 -50.68 -0.03 -2.10 16 21 C 0.17 6.86 5.14 86.38 0.44 7.30 16 22 N -0.73 -35.78 4.93 -343.45 -1.69 -37.47 16 23 C -0.24 -13.44 9.99 84.03 0.84 -12.60 16 24 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 25 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 26 N -0.96 -57.75 13.06 21.65 0.28 -57.46 16 27 Si 0.96 46.95 29.55 68.60 2.03 48.98 16 28 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 29 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 30 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 31 C 0.12 3.32 5.67 86.52 0.49 3.81 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.37 7.40 -2.39 -0.02 1.35 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.09 2.02 8.03 -2.39 -0.02 2.00 16 37 H 0.15 5.26 8.06 -2.91 -0.02 5.24 16 38 H 0.25 2.58 8.06 -2.91 -0.02 2.56 16 39 H 0.07 1.78 7.84 -2.39 -0.02 1.76 16 40 H 0.09 1.70 7.67 -2.38 -0.02 1.68 16 41 H 0.09 1.16 7.79 -2.39 -0.02 1.14 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.05 1.71 7.96 -2.39 -0.02 1.69 16 46 H 0.06 1.72 7.79 -2.39 -0.02 1.70 16 47 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 48 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.38 19.19 6.91 -92.71 -0.64 18.55 16 50 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 51 H 0.09 2.21 7.67 -2.39 -0.02 2.19 16 52 H 0.07 2.30 5.75 -2.38 -0.01 2.29 16 Total: -1.00 -75.08 409.96 2.23 -72.86 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: -0.54 Total: 37.45 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 8.25 Total: 5.49 kcal Atomic # 7 Polarization: -137.58 SS G_CDS: -7.46 Total: -145.03 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.05 Total: -19.73 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -75.08 2.23 -72.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112543785.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.735 kcal (2) G-P(sol) polarization free energy of solvation -75.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds