Wall clock time and date at job start Wed Apr 1 2020 04:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47151 * 2 1 4 4 C 1.52998 * 109.46982 * 120.00171 * 2 1 3 5 5 C 1.50702 * 109.46903 * 294.99602 * 4 2 1 6 6 C 1.34668 * 126.59314 * 85.03127 * 5 4 2 7 7 N 1.34125 * 108.02432 * 179.97438 * 6 5 4 8 8 C 1.30503 * 109.25648 * 0.02562 * 7 6 5 9 9 N 1.35048 * 108.69609 * 359.76382 * 8 7 6 10 10 H 0.96996 * 126.39610 * 180.26884 * 9 8 7 11 11 C 1.50703 * 109.47094 * 239.99704 * 2 1 3 12 12 O 1.21280 * 120.00036 * 240.00250 * 11 2 1 13 13 N 1.34776 * 119.99712 * 59.99703 * 11 2 1 14 14 C 1.48115 * 127.84410 * 359.97438 * 13 11 2 15 15 C 1.54333 * 104.69688 * 140.27805 * 14 13 11 16 16 H 1.09002 * 111.85360 * 262.44259 * 15 14 13 17 17 C 1.54161 * 108.86215 * 137.43836 * 15 14 13 18 18 C 1.54842 * 104.32882 * 271.22997 * 17 15 14 19 19 C 1.55781 * 102.31304 * 321.13436 * 18 17 15 20 20 C 1.54159 * 103.87845 * 39.34845 * 19 18 17 21 21 C 1.53006 * 111.82071 * 212.53194 * 20 19 18 22 22 N 1.46500 * 109.46998 * 299.25948 * 21 20 19 23 23 C 1.36931 * 120.00400 * 180.02562 * 22 21 20 24 24 H 1.08003 * 119.99768 * 359.97438 * 23 22 21 25 25 C 1.38806 * 120.00553 * 180.02562 * 23 22 21 26 26 N 1.31622 * 119.99830 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00262 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47107 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47271 * 119.99893 * 27 25 23 30 30 H 1.48498 * 109.46994 * 239.99654 * 27 25 23 31 31 C 1.48115 * 127.84269 * 179.97438 * 13 11 2 32 32 H 1.09000 * 109.47208 * 59.99958 * 1 2 3 33 33 H 1.09003 * 109.47018 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47209 * 300.00258 * 1 2 3 35 35 H 1.08990 * 109.47671 * 55.00051 * 4 2 1 36 36 H 1.09001 * 109.47028 * 175.00216 * 4 2 1 37 37 H 1.08005 * 125.98437 * 359.96009 * 6 5 4 38 38 H 1.07992 * 125.64759 * 179.97438 * 8 7 6 39 39 H 1.09002 * 110.39573 * 21.47650 * 14 13 11 40 40 H 1.08997 * 110.39454 * 259.08101 * 14 13 11 41 41 H 1.08990 * 110.46388 * 29.94480 * 17 15 14 42 42 H 1.08999 * 110.46065 * 152.52359 * 17 15 14 43 43 H 1.08997 * 110.75867 * 80.12375 * 18 17 15 44 44 H 1.08998 * 110.75987 * 203.32175 * 18 17 15 45 45 H 1.08994 * 111.74629 * 280.25122 * 19 18 17 46 46 H 1.08999 * 109.59772 * 157.39130 * 19 18 17 47 47 H 1.09000 * 109.47050 * 59.25894 * 21 20 19 48 48 H 1.09001 * 109.46801 * 179.26006 * 21 20 19 49 49 H 0.97010 * 119.99910 * 359.97438 * 22 21 20 50 50 H 0.97001 * 119.99731 * 180.02562 * 26 25 23 51 51 H 1.08998 * 110.39588 * 100.92587 * 31 13 11 52 52 H 1.09007 * 110.39288 * 338.53087 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0571 2.4765 6 6 0.4666 -0.0212 3.1304 7 7 0.5107 0.8298 4.1662 8 6 1.6679 1.4329 4.1787 9 7 2.4055 0.9760 3.1439 10 1 3.3077 1.2490 2.9154 11 6 2.0323 -0.7105 -1.2304 12 8 2.7296 -1.6966 -1.1191 13 7 1.7066 -0.2501 -2.4545 14 6 0.8733 0.9274 -2.7904 15 6 1.5822 1.5774 -3.9974 16 1 2.2208 2.4072 -3.6943 17 6 0.5199 1.9966 -5.0330 18 6 0.3440 0.7461 -5.9291 19 6 1.8045 0.2187 -6.0540 20 6 2.3951 0.4288 -4.6456 21 6 3.8909 0.7464 -4.6978 22 7 4.6062 -0.3714 -5.3184 23 6 5.9654 -0.3132 -5.4733 24 1 6.5102 0.5571 -5.1383 25 6 6.6430 -1.3721 -6.0617 26 7 5.9790 -2.4325 -6.4704 27 14 8.4974 -1.2928 -6.2723 28 1 9.0020 -0.0039 -5.7345 29 1 9.1278 -2.4178 -5.5359 30 1 8.8365 -1.3935 -7.7146 31 6 2.1008 -0.8067 -3.7693 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5139 0.8900 35 1 1.6054 -1.7198 1.2952 36 1 3.1263 -0.7995 1.2056 37 1 -0.3652 -0.6577 2.8668 38 1 1.9845 2.1722 4.8995 39 1 0.8402 1.6215 -1.9506 40 1 -0.1339 0.6141 -3.0652 41 1 -0.4183 2.2451 -4.5371 42 1 0.8755 2.8412 -5.6231 43 1 -0.3059 0.0148 -5.4486 44 1 -0.0470 1.0242 -6.9078 45 1 2.3747 0.7802 -6.7940 46 1 1.7900 -0.8414 -6.3068 47 1 4.0501 1.6506 -5.2854 48 1 4.2652 0.9002 -3.6857 49 1 4.1168 -1.1533 -5.6189 50 1 6.4526 -3.1726 -6.8813 51 1 1.2839 -1.3887 -4.1958 52 1 2.9947 -1.4224 -3.6685 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112543786.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:37 Heat of formation + Delta-G solvation = 26.276664 kcal Electronic energy + Delta-G solvation = -31454.262881 eV Core-core repulsion = 27454.274204 eV Total energy + Delta-G solvation = -3999.988676 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.31179 -40.68224 -38.86408 -35.17987 -34.74032 -34.32828 -32.70712 -31.68159 -30.21943 -29.79464 -28.82596 -26.87388 -25.94665 -25.50757 -24.06070 -22.83853 -22.03712 -21.57837 -20.99692 -20.15242 -19.08349 -18.49411 -18.11523 -17.26763 -16.62281 -16.04597 -15.78346 -15.27267 -15.01980 -14.95514 -14.52154 -14.37676 -13.97810 -13.81769 -13.77044 -13.42519 -13.14676 -13.08388 -13.01755 -12.89973 -12.61108 -12.58434 -12.22121 -11.85412 -11.65671 -11.48793 -11.32531 -11.16238 -10.88977 -10.84522 -10.76293 -10.63127 -10.48907 -10.35985 -10.25770 -10.25140 -10.21302 -9.92879 -9.63808 -9.57342 -8.86354 -8.59078 -8.54576 -6.89610 -5.74532 -3.02706 1.77323 2.74601 2.83404 2.91400 3.10616 3.44368 3.49625 3.52056 4.24465 4.42449 4.48347 4.55882 4.62952 4.64867 4.68691 4.77631 4.91639 5.07173 5.10074 5.15500 5.26517 5.29221 5.30156 5.35382 5.45445 5.51485 5.53734 5.56033 5.59641 5.61496 5.63790 5.74152 5.86049 5.90943 5.92031 5.99671 6.04419 6.08702 6.16239 6.19592 6.27652 6.29871 6.48917 6.49691 6.52661 6.61390 6.76690 6.83179 7.10546 7.70942 7.71732 7.80970 8.28782 8.44212 9.55695 10.12909 10.47768 11.48412 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010506 B = 0.002920 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.431234 B = 9587.719095 C =11414.103856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 H 0.092 0.908 4 C -0.028 4.028 5 C -0.013 4.013 6 C -0.024 4.024 7 N -0.495 5.495 8 C 0.179 3.821 9 N -0.567 5.567 10 H 0.420 0.580 11 C 0.535 3.465 12 O -0.534 6.534 13 N -0.617 5.617 14 C 0.106 3.894 15 C -0.100 4.100 16 H 0.087 0.913 17 C -0.114 4.114 18 C -0.126 4.126 19 C -0.105 4.105 20 C -0.074 4.074 21 C 0.174 3.826 22 N -0.728 5.728 23 C -0.237 4.237 24 H 0.069 0.931 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.905 3.095 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 C 0.115 3.885 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.168 0.832 38 H 0.206 0.794 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.021 0.979 48 H 0.015 0.985 49 H 0.384 0.616 50 H 0.254 0.746 51 H 0.066 0.934 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.518 10.610 13.426 23.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.120 4.120 3 H 0.110 0.890 4 C -0.067 4.067 5 C -0.129 4.129 6 C -0.172 4.172 7 N -0.214 5.214 8 C -0.105 4.105 9 N -0.170 5.170 10 H 0.258 0.742 11 C 0.323 3.677 12 O -0.410 6.410 13 N -0.350 5.350 14 C -0.017 4.017 15 C -0.120 4.120 16 H 0.105 0.895 17 C -0.152 4.152 18 C -0.164 4.164 19 C -0.143 4.143 20 C -0.075 4.075 21 C 0.046 3.954 22 N -0.373 5.373 23 C -0.369 4.369 24 H 0.086 0.914 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.737 3.263 28 H -0.207 1.207 29 H -0.219 1.219 30 H -0.219 1.219 31 C -0.007 4.007 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.186 0.814 38 H 0.223 0.777 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.087 0.913 47 H 0.038 0.962 48 H 0.033 0.967 49 H 0.218 0.782 50 H 0.064 0.936 51 H 0.084 0.916 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.622 10.188 14.203 23.443 hybrid contribution 2.069 -0.119 -0.907 2.262 sum -13.553 10.069 13.296 21.491 Atomic orbital electron populations 1.21990 0.92590 1.03117 1.03212 1.21178 0.98101 1.00442 0.92288 0.89005 1.19865 1.02354 0.97645 0.86836 1.21298 0.93968 0.98283 0.99380 1.22105 0.97622 1.02622 0.94833 1.70284 1.19530 1.10185 1.21434 1.24951 0.88863 1.02918 0.93764 1.43353 1.16561 1.32974 1.24113 0.74216 1.20105 0.80021 0.84522 0.83052 1.90760 1.37882 1.26517 1.85863 1.48923 1.50958 1.29644 1.05494 1.22612 0.94324 0.87367 0.97418 1.22743 0.96567 0.97941 0.94722 0.89484 1.22336 0.97671 0.98299 0.96864 1.22683 0.97342 0.97043 0.99298 1.22470 0.94112 1.01907 0.95768 1.22252 0.96665 0.93721 0.94896 1.20549 0.87348 0.91802 0.95695 1.42328 1.04730 1.18021 1.72202 1.19223 0.83609 1.01454 1.32570 0.91350 1.24715 0.97844 0.96642 1.01693 1.69662 1.34346 1.07401 1.46620 0.86140 0.85734 0.77161 0.77293 1.20661 1.21884 1.21906 1.22527 1.01375 0.95991 0.80817 0.91653 0.91852 0.90916 0.88582 0.90026 0.81434 0.77724 0.90685 0.90904 0.91742 0.91301 0.91729 0.91698 0.90438 0.91279 0.96158 0.96691 0.78164 0.93586 0.91565 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.63 37.16 0.32 -0.94 16 2 C -0.10 -1.01 2.05 -91.77 -0.19 -1.20 16 3 H 0.09 0.87 7.95 -51.93 -0.41 0.46 16 4 C -0.03 -0.28 4.60 -27.88 -0.13 -0.41 16 5 C -0.01 -0.13 6.09 -81.60 -0.50 -0.62 16 6 C -0.02 -0.25 10.10 -17.81 -0.18 -0.43 16 7 N -0.50 -5.53 11.25 -14.67 -0.16 -5.69 16 8 C 0.18 1.45 13.04 -90.37 -1.18 0.27 16 9 N -0.57 -4.29 6.15 -10.30 -0.06 -4.35 16 10 H 0.42 2.12 8.96 -40.82 -0.37 1.75 16 11 C 0.53 7.90 7.27 -10.98 -0.08 7.82 16 12 O -0.53 -10.36 16.18 5.56 0.09 -10.27 16 13 N -0.62 -8.59 3.30 -169.44 -0.56 -9.15 16 14 C 0.11 1.08 4.64 -2.46 -0.01 1.07 16 15 C -0.10 -1.14 3.59 -88.30 -0.32 -1.46 16 16 H 0.09 1.00 7.88 -51.93 -0.41 0.59 16 17 C -0.11 -1.08 6.08 -25.15 -0.15 -1.23 16 18 C -0.13 -1.34 6.86 -24.28 -0.17 -1.51 16 19 C -0.10 -1.50 5.19 -24.64 -0.13 -1.63 16 20 C -0.07 -1.13 0.62 -152.20 -0.09 -1.22 16 21 C 0.17 3.45 5.14 -4.04 -0.02 3.43 16 22 N -0.73 -18.25 4.93 -59.91 -0.30 -18.55 16 23 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 24 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 25 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 27 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 28 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 30 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 31 C 0.11 1.87 5.81 -2.47 -0.01 1.86 16 32 H 0.06 0.50 5.34 -51.93 -0.28 0.22 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.57 6.18 -51.93 -0.32 0.25 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 0.91 7.95 -51.93 -0.41 0.50 16 37 H 0.17 1.48 8.02 -52.48 -0.42 1.05 16 38 H 0.21 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.07 0.63 6.55 -51.93 -0.34 0.29 16 40 H 0.07 0.65 7.49 -51.93 -0.39 0.26 16 41 H 0.06 0.49 7.74 -51.93 -0.40 0.09 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 1.23 7.96 -51.93 -0.41 0.81 16 46 H 0.07 1.07 7.79 -51.93 -0.40 0.67 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.38 10.08 6.91 -40.82 -0.28 9.80 16 50 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 51 H 0.07 1.00 7.67 -51.93 -0.40 0.60 16 52 H 0.10 2.05 6.99 -51.92 -0.36 1.69 16 LS Contribution 403.50 15.07 6.08 6.08 Total: -1.00 -35.53 403.50 -10.83 -46.37 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -8.54 Total: 9.01 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -3.08 Total: -3.51 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: -0.36 Total: -65.39 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.53 -10.83 -46.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112543786.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.642 kcal (2) G-P(sol) polarization free energy of solvation -35.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds