Wall clock time and date at job start Wed Apr 1 2020 04:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47151 * 2 1 4 4 C 1.52998 * 109.46982 * 120.00171 * 2 1 3 5 5 C 1.50702 * 109.46903 * 294.99602 * 4 2 1 6 6 C 1.34668 * 126.59314 * 85.03127 * 5 4 2 7 7 N 1.34125 * 108.02432 * 179.97438 * 6 5 4 8 8 C 1.30503 * 109.25648 * 0.02562 * 7 6 5 9 9 N 1.35048 * 108.69609 * 359.76382 * 8 7 6 10 10 H 0.96996 * 126.39610 * 180.26884 * 9 8 7 11 11 C 1.50703 * 109.47094 * 239.99704 * 2 1 3 12 12 O 1.21280 * 120.00036 * 240.00250 * 11 2 1 13 13 N 1.34776 * 119.99712 * 59.99703 * 11 2 1 14 14 C 1.48115 * 127.84410 * 359.97438 * 13 11 2 15 15 C 1.54333 * 104.69688 * 140.27805 * 14 13 11 16 16 H 1.09002 * 111.85360 * 262.44259 * 15 14 13 17 17 C 1.54161 * 108.86215 * 137.43836 * 15 14 13 18 18 C 1.54842 * 104.32882 * 271.22997 * 17 15 14 19 19 C 1.55781 * 102.31304 * 321.13436 * 18 17 15 20 20 C 1.54159 * 103.87845 * 39.34845 * 19 18 17 21 21 C 1.53006 * 111.82071 * 212.53194 * 20 19 18 22 22 N 1.46500 * 109.46998 * 299.25948 * 21 20 19 23 23 C 1.36931 * 120.00400 * 180.02562 * 22 21 20 24 24 H 1.08003 * 119.99768 * 359.97438 * 23 22 21 25 25 C 1.38806 * 120.00553 * 180.02562 * 23 22 21 26 26 N 1.31622 * 119.99830 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00262 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47107 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47271 * 119.99893 * 27 25 23 30 30 H 1.48498 * 109.46994 * 239.99654 * 27 25 23 31 31 C 1.48115 * 127.84269 * 179.97438 * 13 11 2 32 32 H 1.09000 * 109.47208 * 59.99958 * 1 2 3 33 33 H 1.09003 * 109.47018 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47209 * 300.00258 * 1 2 3 35 35 H 1.08990 * 109.47671 * 55.00051 * 4 2 1 36 36 H 1.09001 * 109.47028 * 175.00216 * 4 2 1 37 37 H 1.08005 * 125.98437 * 359.96009 * 6 5 4 38 38 H 1.07992 * 125.64759 * 179.97438 * 8 7 6 39 39 H 1.09002 * 110.39573 * 21.47650 * 14 13 11 40 40 H 1.08997 * 110.39454 * 259.08101 * 14 13 11 41 41 H 1.08990 * 110.46388 * 29.94480 * 17 15 14 42 42 H 1.08999 * 110.46065 * 152.52359 * 17 15 14 43 43 H 1.08997 * 110.75867 * 80.12375 * 18 17 15 44 44 H 1.08998 * 110.75987 * 203.32175 * 18 17 15 45 45 H 1.08994 * 111.74629 * 280.25122 * 19 18 17 46 46 H 1.08999 * 109.59772 * 157.39130 * 19 18 17 47 47 H 1.09000 * 109.47050 * 59.25894 * 21 20 19 48 48 H 1.09001 * 109.46801 * 179.26006 * 21 20 19 49 49 H 0.97010 * 119.99910 * 359.97438 * 22 21 20 50 50 H 0.97001 * 119.99731 * 180.02562 * 26 25 23 51 51 H 1.08998 * 110.39588 * 100.92587 * 31 13 11 52 52 H 1.09007 * 110.39288 * 338.53087 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0571 2.4765 6 6 0.4666 -0.0212 3.1304 7 7 0.5107 0.8298 4.1662 8 6 1.6679 1.4329 4.1787 9 7 2.4055 0.9760 3.1439 10 1 3.3077 1.2490 2.9154 11 6 2.0323 -0.7105 -1.2304 12 8 2.7296 -1.6966 -1.1191 13 7 1.7066 -0.2501 -2.4545 14 6 0.8733 0.9274 -2.7904 15 6 1.5822 1.5774 -3.9974 16 1 2.2208 2.4072 -3.6943 17 6 0.5199 1.9966 -5.0330 18 6 0.3440 0.7461 -5.9291 19 6 1.8045 0.2187 -6.0540 20 6 2.3951 0.4288 -4.6456 21 6 3.8909 0.7464 -4.6978 22 7 4.6062 -0.3714 -5.3184 23 6 5.9654 -0.3132 -5.4733 24 1 6.5102 0.5571 -5.1383 25 6 6.6430 -1.3721 -6.0617 26 7 5.9790 -2.4325 -6.4704 27 14 8.4974 -1.2928 -6.2723 28 1 9.0020 -0.0039 -5.7345 29 1 9.1278 -2.4178 -5.5359 30 1 8.8365 -1.3935 -7.7146 31 6 2.1008 -0.8067 -3.7693 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5139 0.8900 35 1 1.6054 -1.7198 1.2952 36 1 3.1263 -0.7995 1.2056 37 1 -0.3652 -0.6577 2.8668 38 1 1.9845 2.1722 4.8995 39 1 0.8402 1.6215 -1.9506 40 1 -0.1339 0.6141 -3.0652 41 1 -0.4183 2.2451 -4.5371 42 1 0.8755 2.8412 -5.6231 43 1 -0.3059 0.0148 -5.4486 44 1 -0.0470 1.0242 -6.9078 45 1 2.3747 0.7802 -6.7940 46 1 1.7900 -0.8414 -6.3068 47 1 4.0501 1.6506 -5.2854 48 1 4.2652 0.9002 -3.6857 49 1 4.1168 -1.1533 -5.6189 50 1 6.4526 -3.1726 -6.8813 51 1 1.2839 -1.3887 -4.1958 52 1 2.9947 -1.4224 -3.6685 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112543786.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:35 Heat of formation + Delta-G solvation = 3.332733 kcal Electronic energy + Delta-G solvation = -31455.257804 eV Core-core repulsion = 27454.274204 eV Total energy + Delta-G solvation = -4000.983600 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.98978 -41.80259 -40.01708 -36.53192 -36.07114 -35.54675 -33.52160 -33.36343 -31.29716 -30.87584 -30.07581 -27.60896 -27.44734 -26.51852 -25.64349 -24.10465 -23.27953 -22.28236 -21.69994 -21.12808 -20.14519 -19.84935 -19.10758 -18.78931 -17.78741 -17.07355 -16.89562 -16.71366 -16.18664 -15.91060 -15.74589 -15.41703 -15.12388 -15.02161 -14.96761 -14.69665 -14.47834 -14.34050 -13.92852 -13.82599 -13.60686 -13.56923 -13.30219 -13.11664 -13.02054 -12.89124 -12.78471 -12.27272 -12.17269 -12.13910 -12.11198 -11.74727 -11.71295 -11.63943 -11.52597 -11.48174 -11.31564 -10.98953 -10.96915 -10.92783 -10.71270 -9.72310 -9.29327 -9.02493 -7.98685 -5.26916 1.09671 1.41681 1.43558 1.53062 1.60361 1.93073 2.23814 2.32348 2.51694 3.27865 3.34438 3.46238 3.60266 3.69018 3.80422 3.87919 3.95961 4.15863 4.18546 4.21661 4.22751 4.25338 4.32235 4.39593 4.45825 4.47766 4.54282 4.64200 4.70966 4.74726 4.75781 4.78151 4.82315 4.89557 4.94143 4.97911 5.03997 5.07272 5.15857 5.21388 5.27403 5.30987 5.31408 5.36451 5.39057 5.42702 5.52591 5.55180 5.79788 6.23608 6.56408 6.61022 7.13530 7.15251 7.29882 8.06278 8.29644 9.25094 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010506 B = 0.002920 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.431234 B = 9587.719095 C =11414.103856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 H 0.109 0.891 4 C -0.021 4.021 5 C -0.018 4.018 6 C -0.034 4.034 7 N -0.535 5.535 8 C 0.190 3.810 9 N -0.561 5.561 10 H 0.432 0.568 11 C 0.526 3.474 12 O -0.594 6.594 13 N -0.617 5.617 14 C 0.105 3.895 15 C -0.094 4.094 16 H 0.090 0.910 17 C -0.104 4.104 18 C -0.116 4.116 19 C -0.107 4.107 20 C -0.070 4.070 21 C 0.175 3.825 22 N -0.739 5.739 23 C -0.244 4.244 24 H 0.071 0.929 25 C -0.076 4.076 26 N -0.968 5.968 27 Si 0.972 3.028 28 H -0.266 1.266 29 H -0.296 1.296 30 H -0.289 1.289 31 C 0.119 3.881 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.174 0.826 38 H 0.242 0.758 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.057 0.943 46 H 0.045 0.955 47 H 0.024 0.976 48 H -0.001 1.001 49 H 0.374 0.626 50 H 0.251 0.749 51 H 0.077 0.923 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.489 13.751 14.500 26.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 H 0.127 0.873 4 C -0.060 4.060 5 C -0.135 4.135 6 C -0.181 4.181 7 N -0.255 5.255 8 C -0.094 4.094 9 N -0.165 5.165 10 H 0.272 0.728 11 C 0.316 3.684 12 O -0.475 6.475 13 N -0.349 5.349 14 C -0.016 4.016 15 C -0.113 4.113 16 H 0.108 0.892 17 C -0.141 4.141 18 C -0.153 4.153 19 C -0.145 4.145 20 C -0.072 4.072 21 C 0.048 3.952 22 N -0.382 5.382 23 C -0.376 4.376 24 H 0.089 0.911 25 C -0.268 4.268 26 N -0.619 5.619 27 Si 0.801 3.199 28 H -0.191 1.191 29 H -0.223 1.223 30 H -0.216 1.216 31 C -0.004 4.004 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.191 0.809 38 H 0.258 0.742 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.042 0.958 48 H 0.017 0.983 49 H 0.207 0.793 50 H 0.060 0.940 51 H 0.095 0.905 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -17.614 13.407 15.275 26.895 hybrid contribution 2.723 -1.085 -1.210 3.172 sum -14.891 12.322 14.065 23.904 Atomic orbital electron populations 1.21967 0.90468 1.03283 1.04432 1.21146 0.99566 1.00249 0.89578 0.87339 1.19699 1.01174 0.97550 0.87575 1.21041 0.94169 0.98961 0.99283 1.22286 0.98156 1.02793 0.94899 1.70291 1.21337 1.11517 1.22331 1.25675 0.87907 1.02222 0.93550 1.43358 1.17026 1.32347 1.23753 0.72818 1.21025 0.79040 0.83982 0.84335 1.90730 1.40609 1.29351 1.86766 1.49053 1.50961 1.30481 1.04386 1.22943 0.94480 0.86215 0.97959 1.22763 0.96683 0.96315 0.95572 0.89151 1.22332 0.98340 0.97497 0.95956 1.22653 0.94158 0.97783 1.00722 1.22426 0.97092 1.00465 0.94480 1.22141 0.93966 0.95199 0.95864 1.20665 0.90331 0.90229 0.93946 1.42518 1.04185 1.19100 1.72356 1.19619 0.85201 1.01312 1.31483 0.91087 1.25561 1.02438 0.96524 1.02259 1.69825 1.35966 1.08104 1.47976 0.85087 0.80285 0.77402 0.77082 1.19069 1.22322 1.21570 1.22279 0.99271 0.96029 0.82835 0.90098 0.92337 0.89845 0.89574 0.91708 0.80864 0.74160 0.87642 0.88158 0.88158 0.90852 0.90524 0.90335 0.92380 0.93571 0.95789 0.98326 0.79332 0.94026 0.90472 0.94314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.63 71.98 0.62 -1.39 16 2 C -0.08 -1.61 2.05 -11.54 -0.02 -1.64 16 3 H 0.11 1.75 7.95 -2.39 -0.02 1.74 16 4 C -0.02 -0.42 4.60 29.85 0.14 -0.28 16 5 C -0.02 -0.32 6.09 40.95 0.25 -0.07 16 6 C -0.03 -0.65 10.10 83.52 0.84 0.19 16 7 N -0.54 -10.98 11.25 -200.31 -2.25 -13.24 16 8 C 0.19 2.60 13.04 180.26 2.35 4.95 16 9 N -0.56 -7.37 6.15 -186.49 -1.15 -8.52 16 10 H 0.43 3.51 8.96 -92.71 -0.83 2.68 16 11 C 0.53 15.72 7.27 87.66 0.64 16.35 16 12 O -0.59 -24.56 16.18 -3.03 -0.05 -24.61 16 13 N -0.62 -16.80 3.30 -808.38 -2.67 -19.47 16 14 C 0.11 1.76 4.64 86.52 0.40 2.16 16 15 C -0.09 -1.87 3.59 -9.29 -0.03 -1.90 16 16 H 0.09 1.80 7.88 -2.39 -0.02 1.78 16 17 C -0.10 -1.51 6.08 31.62 0.19 -1.31 16 18 C -0.12 -2.12 6.86 32.18 0.22 -1.90 16 19 C -0.11 -3.07 5.19 31.95 0.17 -2.91 16 20 C -0.07 -2.15 0.62 -50.69 -0.03 -2.18 16 21 C 0.17 7.20 5.14 86.38 0.44 7.64 16 22 N -0.74 -38.99 4.93 -343.45 -1.69 -40.68 16 23 C -0.24 -14.23 9.99 84.03 0.84 -13.39 16 24 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 25 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 26 N -0.97 -61.38 13.06 21.65 0.28 -61.10 16 27 Si 0.97 47.88 29.55 68.60 2.03 49.90 16 28 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 29 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 30 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 31 C 0.12 4.03 5.81 86.51 0.50 4.54 16 32 H 0.08 0.88 5.34 -2.39 -0.01 0.87 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 34 H 0.08 1.05 6.18 -2.39 -0.01 1.03 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 1.52 7.95 -2.39 -0.02 1.50 16 37 H 0.17 2.88 8.02 -2.91 -0.02 2.86 16 38 H 0.24 1.17 8.06 -2.91 -0.02 1.14 16 39 H 0.11 1.21 6.55 -2.39 -0.02 1.20 16 40 H 0.10 1.23 7.49 -2.39 -0.02 1.21 16 41 H 0.10 0.86 7.74 -2.39 -0.02 0.84 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.06 1.88 7.96 -2.39 -0.02 1.86 16 46 H 0.05 1.51 7.79 -2.39 -0.02 1.49 16 47 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 49 H 0.37 21.02 6.91 -92.70 -0.64 20.38 16 50 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 51 H 0.08 2.40 7.67 -2.39 -0.02 2.38 16 52 H 0.04 1.77 6.99 -2.38 -0.02 1.75 16 Total: -1.00 -83.24 403.50 1.95 -81.29 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: -0.54 Total: 31.61 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 7.98 Total: 4.82 kcal Atomic # 7 Polarization: -135.53 SS G_CDS: -7.48 Total: -143.01 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.05 Total: -24.61 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.90 kcal Total: -83.24 1.95 -81.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112543786.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.623 kcal (2) G-P(sol) polarization free energy of solvation -83.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds