Wall clock time and date at job start Wed Apr 1 2020 05:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47327 * 2 1 4 4 C 1.53002 * 109.47302 * 119.99971 * 2 1 3 5 5 C 1.50695 * 109.47262 * 295.00020 * 4 2 1 6 6 O 1.21280 * 120.00144 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00220 * 179.97438 * 5 4 2 8 8 C 1.48115 * 127.83879 * 0.02562 * 7 5 4 9 9 C 1.54332 * 104.69065 * 219.72730 * 8 7 5 10 10 H 1.08998 * 111.85076 * 214.54938 * 9 8 7 11 11 C 1.54160 * 108.86600 * 89.54592 * 9 8 7 12 12 C 1.54837 * 104.33343 * 271.20682 * 11 9 8 13 13 C 1.57145 * 102.91040 * 321.70558 * 12 11 9 14 14 C 1.54160 * 103.23165 * 38.20227 * 13 12 11 15 15 C 1.53005 * 111.81740 * 213.15150 * 14 13 12 16 16 N 1.46505 * 109.46904 * 298.61074 * 15 14 13 17 17 C 1.36931 * 119.99788 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 15 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48496 * 109.47141 * 59.99751 * 21 19 17 23 23 H 1.48490 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 300.00028 * 21 19 17 25 25 C 1.48116 * 127.84604 * 180.02562 * 7 5 4 26 26 N 1.46493 * 109.47082 * 240.00089 * 2 1 3 27 27 C 1.34946 * 126.03764 * 324.71635 * 26 2 1 28 28 C 1.35320 * 107.74628 * 179.83899 * 27 26 2 29 29 C 1.39870 * 107.92167 * 0.42109 * 28 27 26 30 30 N 1.30837 * 108.19861 * 359.74106 * 29 28 27 31 31 H 1.08995 * 109.46805 * 59.99420 * 1 2 3 32 32 H 1.09000 * 109.47327 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46924 * 300.00153 * 1 2 3 34 34 H 1.08997 * 109.47253 * 174.99590 * 4 2 1 35 35 H 1.09004 * 109.46951 * 54.99949 * 4 2 1 36 36 H 1.08993 * 110.39868 * 338.53301 * 8 7 5 37 37 H 1.09002 * 110.39348 * 100.81585 * 8 7 5 38 38 H 1.08999 * 110.46192 * 29.91385 * 11 9 8 39 39 H 1.08992 * 110.46299 * 152.49133 * 11 9 8 40 40 H 1.08994 * 110.76638 * 80.13764 * 12 11 9 41 41 H 1.09000 * 110.76159 * 203.51786 * 12 11 9 42 42 H 1.08993 * 111.52181 * 279.59202 * 13 12 11 43 43 H 1.09004 * 110.44659 * 156.29230 * 13 12 11 44 44 H 1.09003 * 109.46946 * 178.61833 * 15 14 13 45 45 H 1.08993 * 109.47679 * 58.61376 * 15 14 13 46 46 H 0.97000 * 119.99792 * 0.02562 * 16 15 14 47 47 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 48 48 H 1.09006 * 110.38979 * 21.48201 * 25 7 5 49 49 H 1.09003 * 110.48777 * 259.14959 * 25 7 5 50 50 H 1.08003 * 126.12989 * 0.02562 * 27 26 2 51 51 H 1.08005 * 126.04258 * 180.16238 * 28 27 26 52 52 H 1.08000 * 125.90288 * 179.75557 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0570 2.4766 6 8 1.0110 1.0869 2.3634 7 7 1.9846 -0.3919 3.7001 8 6 2.7456 -1.6168 4.0381 9 6 2.0433 -2.1806 5.2914 10 1 2.7496 -2.6523 5.9745 11 6 0.9219 -3.1398 4.8454 12 6 -0.3180 -2.2278 4.6767 13 6 -0.1758 -1.2174 5.8719 14 6 1.3425 -0.9589 5.9367 15 6 1.8179 -0.7196 7.3712 16 7 1.1534 0.4678 7.9142 17 6 1.4242 0.8798 9.1917 18 1 2.1279 0.3298 9.7988 19 6 0.7988 2.0082 9.7042 20 7 -0.0584 2.6788 8.9641 21 14 1.1740 2.5749 11.4442 22 1 2.6220 2.8818 11.5634 23 1 0.3824 3.7935 11.7494 24 1 0.8155 1.4992 12.4032 25 6 1.6863 0.2275 5.0121 26 7 2.0183 -0.6906 -1.1961 27 6 1.4431 -1.7591 -1.7863 28 6 2.1962 -2.0923 -2.8601 29 6 3.2738 -1.2027 -2.9228 30 7 3.1681 -0.3621 -1.9258 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 3.1263 -0.7995 1.2056 35 1 1.6054 -1.7198 1.2952 36 1 2.6943 -2.3341 3.2190 37 1 3.7835 -1.3697 4.2611 38 1 1.1791 -3.6121 3.8974 39 1 0.7388 -3.8940 5.6106 40 1 -0.2853 -1.7038 3.7216 41 1 -1.2378 -2.8050 4.7706 42 1 -0.5287 -1.6521 6.8071 43 1 -0.7108 -0.2929 5.6546 44 1 2.8970 -0.5658 7.3755 45 1 1.5720 -1.5862 7.9848 46 1 0.5216 0.9620 7.3688 47 1 -0.4957 3.4671 9.3224 48 1 0.8347 0.9029 4.9283 49 1 2.5584 0.7621 5.3887 50 1 0.5414 -2.2572 -1.4619 51 1 2.0022 -2.9046 -3.5450 52 1 4.0574 -1.2086 -3.6659 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112559408.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:27 Heat of formation + Delta-G solvation = 56.558038 kcal Electronic energy + Delta-G solvation = -31418.908453 eV Core-core repulsion = 27420.232875 eV Total energy + Delta-G solvation = -3998.675577 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.48236 -40.74587 -38.88475 -35.55626 -34.82764 -34.10984 -31.78658 -30.68284 -30.11467 -29.96188 -29.39832 -28.10033 -25.49249 -25.42719 -23.91819 -23.26995 -22.14350 -21.29007 -20.32848 -20.22772 -19.28562 -18.63516 -17.82108 -17.07936 -16.60986 -16.31500 -15.85642 -15.33671 -14.98053 -14.63507 -14.48915 -14.37104 -13.99228 -13.81076 -13.52200 -13.43211 -13.26312 -13.13892 -13.10984 -12.98304 -12.86038 -12.54964 -12.26706 -11.95454 -11.78034 -11.57419 -11.47448 -11.21142 -10.89376 -10.87890 -10.80603 -10.78847 -10.64680 -10.58951 -10.41275 -10.27783 -10.00273 -9.88163 -9.67786 -9.63197 -8.88880 -8.84944 -8.60152 -6.93605 -5.76684 -3.05838 1.66011 2.15404 2.53901 2.62742 2.99305 3.43527 3.48021 3.49247 4.16045 4.27374 4.35889 4.42089 4.56045 4.58624 4.62619 4.70768 4.74819 4.85735 5.07484 5.12949 5.17189 5.25345 5.27509 5.36072 5.37857 5.45821 5.49054 5.53899 5.54667 5.61049 5.65799 5.70135 5.72594 5.77222 5.85515 5.89150 5.94136 5.98378 6.11779 6.15113 6.21800 6.30010 6.41800 6.47277 6.48478 6.58973 6.71666 6.76087 6.78956 7.49791 7.55434 7.68478 8.08522 8.41593 9.53055 10.09975 10.44598 11.45793 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.002332 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.167040 B =12005.096233 C =12524.693631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.175 3.825 3 H 0.112 0.888 4 C -0.148 4.148 5 C 0.538 3.462 6 O -0.537 6.537 7 N -0.614 5.614 8 C 0.104 3.896 9 C -0.098 4.098 10 H 0.096 0.904 11 C -0.113 4.113 12 C -0.123 4.123 13 C -0.103 4.103 14 C -0.075 4.075 15 C 0.172 3.828 16 N -0.730 5.730 17 C -0.242 4.242 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.121 3.879 26 N -0.365 5.365 27 C 0.056 3.944 28 C -0.279 4.279 29 C 0.041 3.959 30 N -0.297 5.297 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.020 0.980 45 H 0.024 0.976 46 H 0.385 0.615 47 H 0.256 0.744 48 H 0.087 0.913 49 H 0.076 0.924 50 H 0.171 0.829 51 H 0.145 0.855 52 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.354 -15.116 -21.128 26.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.073 3.927 3 H 0.130 0.870 4 C -0.189 4.189 5 C 0.326 3.674 6 O -0.415 6.415 7 N -0.347 5.347 8 C -0.019 4.019 9 C -0.118 4.118 10 H 0.114 0.886 11 C -0.151 4.151 12 C -0.160 4.160 13 C -0.141 4.141 14 C -0.076 4.076 15 C 0.044 3.956 16 N -0.374 5.374 17 C -0.373 4.373 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.001 4.001 26 N -0.147 5.147 27 C -0.091 4.091 28 C -0.308 4.308 29 C -0.145 4.145 30 N -0.118 5.118 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.038 0.962 45 H 0.042 0.958 46 H 0.219 0.781 47 H 0.066 0.934 48 H 0.105 0.895 49 H 0.094 0.906 50 H 0.188 0.812 51 H 0.163 0.837 52 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.519 -13.400 -20.427 24.682 hybrid contribution -0.239 -0.339 0.426 0.594 sum 3.280 -13.738 -20.001 24.486 Atomic orbital electron populations 1.22330 0.91998 1.02984 1.05290 1.20962 0.95387 0.96988 0.79323 0.87006 1.22030 1.03906 1.00602 0.92387 1.19699 0.79421 0.85377 0.82869 1.90724 1.40504 1.24563 1.85692 1.48943 1.54623 1.25494 1.05686 1.22549 0.95536 0.86480 0.97317 1.22701 0.97428 0.95885 0.95748 0.88628 1.22355 0.95005 0.97240 1.00467 1.22850 0.97195 0.97204 0.98788 1.22746 0.94258 0.99207 0.97853 1.22261 0.96045 0.93360 0.95934 1.20606 0.95129 0.91055 0.88764 1.42324 1.51609 1.29181 1.14326 1.19148 1.20458 1.07511 0.90153 0.91291 1.24737 0.99562 0.98247 0.98290 1.69646 1.31594 1.20347 1.36376 0.86281 0.77522 0.77880 0.84559 1.21308 1.21722 1.21315 1.22491 1.02321 0.95377 0.79877 1.48984 1.19403 1.23816 1.22520 1.22522 0.99922 0.91193 0.95440 1.21509 0.99510 1.06640 1.03153 1.23895 0.99316 0.94010 0.97289 1.77409 1.02834 1.23817 1.07701 0.91581 0.92150 0.87708 0.88234 0.88481 0.90627 0.90912 0.92119 0.91362 0.92164 0.92102 0.90753 0.91319 0.96239 0.95848 0.78125 0.93426 0.89493 0.90569 0.81191 0.83688 0.80189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 8.58 37.16 0.32 -1.22 16 2 C 0.18 1.80 3.05 -67.93 -0.21 1.59 16 3 H 0.11 1.36 7.96 -51.93 -0.41 0.94 16 4 C -0.15 -1.43 4.48 -27.88 -0.12 -1.55 16 5 C 0.54 7.02 7.60 -10.99 -0.08 6.93 16 6 O -0.54 -8.87 14.23 5.56 0.08 -8.80 16 7 N -0.61 -7.86 2.53 -169.45 -0.43 -8.29 16 8 C 0.10 1.04 6.34 -2.46 -0.02 1.02 16 9 C -0.10 -1.08 3.62 -88.30 -0.32 -1.40 16 10 H 0.10 0.98 7.88 -51.93 -0.41 0.57 16 11 C -0.11 -1.11 6.28 -25.16 -0.16 -1.27 16 12 C -0.12 -1.43 6.57 -23.51 -0.15 -1.59 16 13 C -0.10 -1.55 5.50 -23.87 -0.13 -1.68 16 14 C -0.07 -1.10 0.67 -152.21 -0.10 -1.21 16 15 C 0.17 3.22 5.10 -4.04 -0.02 3.20 16 16 N -0.73 -17.67 5.23 -59.90 -0.31 -17.98 16 17 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 18 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -28.00 13.06 55.49 0.72 -27.27 16 21 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 C 0.12 1.92 5.51 -2.48 -0.01 1.91 16 26 N -0.36 -3.79 3.52 -54.87 -0.19 -3.98 16 27 C 0.06 0.47 10.59 -17.22 -0.18 0.28 16 28 C -0.28 -2.28 10.80 -40.01 -0.43 -2.71 16 29 C 0.04 0.38 12.03 -17.36 -0.21 0.17 16 30 N -0.30 -3.54 12.58 30.62 0.39 -3.15 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.43 7.16 -51.93 -0.37 0.06 16 33 H 0.10 1.19 5.95 -51.93 -0.31 0.88 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 0.75 7.95 -51.93 -0.41 0.34 16 36 H 0.08 0.58 6.60 -51.93 -0.34 0.24 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.49 7.45 -51.93 -0.39 0.11 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.73 7.67 -51.93 -0.40 0.33 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 1.21 7.96 -51.93 -0.41 0.79 16 43 H 0.07 1.17 7.42 -51.93 -0.39 0.78 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.38 9.90 7.06 -40.82 -0.29 9.61 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.09 1.61 7.15 -51.93 -0.37 1.24 16 49 H 0.08 1.32 7.95 -51.93 -0.41 0.91 16 50 H 0.17 0.93 7.27 -52.48 -0.38 0.55 16 51 H 0.15 0.85 8.06 -52.48 -0.42 0.42 16 52 H 0.18 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 406.88 15.07 6.13 6.13 Total: -1.00 -32.88 406.88 -9.37 -42.24 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -8.65 Total: 8.54 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -2.08 Total: -4.71 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 0.17 Total: -60.68 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.08 Total: -8.80 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.88 -9.37 -42.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112559408.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.800 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds