Wall clock time and date at job start Wed Apr 1 2020 05:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47327 * 2 1 4 4 C 1.53002 * 109.47302 * 119.99971 * 2 1 3 5 5 C 1.50695 * 109.47262 * 295.00020 * 4 2 1 6 6 O 1.21280 * 120.00144 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00220 * 179.97438 * 5 4 2 8 8 C 1.48115 * 127.83879 * 0.02562 * 7 5 4 9 9 C 1.54332 * 104.69065 * 219.72730 * 8 7 5 10 10 H 1.08998 * 111.85076 * 214.54938 * 9 8 7 11 11 C 1.54160 * 108.86600 * 89.54592 * 9 8 7 12 12 C 1.54837 * 104.33343 * 271.20682 * 11 9 8 13 13 C 1.57145 * 102.91040 * 321.70558 * 12 11 9 14 14 C 1.54160 * 103.23165 * 38.20227 * 13 12 11 15 15 C 1.53005 * 111.81740 * 213.15150 * 14 13 12 16 16 N 1.46505 * 109.46904 * 298.61074 * 15 14 13 17 17 C 1.36931 * 119.99788 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 15 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48496 * 109.47141 * 59.99751 * 21 19 17 23 23 H 1.48490 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 300.00028 * 21 19 17 25 25 C 1.48116 * 127.84604 * 180.02562 * 7 5 4 26 26 N 1.46493 * 109.47082 * 240.00089 * 2 1 3 27 27 C 1.34946 * 126.03764 * 324.71635 * 26 2 1 28 28 C 1.35320 * 107.74628 * 179.83899 * 27 26 2 29 29 C 1.39870 * 107.92167 * 0.42109 * 28 27 26 30 30 N 1.30837 * 108.19861 * 359.74106 * 29 28 27 31 31 H 1.08995 * 109.46805 * 59.99420 * 1 2 3 32 32 H 1.09000 * 109.47327 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46924 * 300.00153 * 1 2 3 34 34 H 1.08997 * 109.47253 * 174.99590 * 4 2 1 35 35 H 1.09004 * 109.46951 * 54.99949 * 4 2 1 36 36 H 1.08993 * 110.39868 * 338.53301 * 8 7 5 37 37 H 1.09002 * 110.39348 * 100.81585 * 8 7 5 38 38 H 1.08999 * 110.46192 * 29.91385 * 11 9 8 39 39 H 1.08992 * 110.46299 * 152.49133 * 11 9 8 40 40 H 1.08994 * 110.76638 * 80.13764 * 12 11 9 41 41 H 1.09000 * 110.76159 * 203.51786 * 12 11 9 42 42 H 1.08993 * 111.52181 * 279.59202 * 13 12 11 43 43 H 1.09004 * 110.44659 * 156.29230 * 13 12 11 44 44 H 1.09003 * 109.46946 * 178.61833 * 15 14 13 45 45 H 1.08993 * 109.47679 * 58.61376 * 15 14 13 46 46 H 0.97000 * 119.99792 * 0.02562 * 16 15 14 47 47 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 48 48 H 1.09006 * 110.38979 * 21.48201 * 25 7 5 49 49 H 1.09003 * 110.48777 * 259.14959 * 25 7 5 50 50 H 1.08003 * 126.12989 * 0.02562 * 27 26 2 51 51 H 1.08005 * 126.04258 * 180.16238 * 28 27 26 52 52 H 1.08000 * 125.90288 * 179.75557 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0570 2.4766 6 8 1.0110 1.0869 2.3634 7 7 1.9846 -0.3919 3.7001 8 6 2.7456 -1.6168 4.0381 9 6 2.0433 -2.1806 5.2914 10 1 2.7496 -2.6523 5.9745 11 6 0.9219 -3.1398 4.8454 12 6 -0.3180 -2.2278 4.6767 13 6 -0.1758 -1.2174 5.8719 14 6 1.3425 -0.9589 5.9367 15 6 1.8179 -0.7196 7.3712 16 7 1.1534 0.4678 7.9142 17 6 1.4242 0.8798 9.1917 18 1 2.1279 0.3298 9.7988 19 6 0.7988 2.0082 9.7042 20 7 -0.0584 2.6788 8.9641 21 14 1.1740 2.5749 11.4442 22 1 2.6220 2.8818 11.5634 23 1 0.3824 3.7935 11.7494 24 1 0.8155 1.4992 12.4032 25 6 1.6863 0.2275 5.0121 26 7 2.0183 -0.6906 -1.1961 27 6 1.4431 -1.7591 -1.7863 28 6 2.1962 -2.0923 -2.8601 29 6 3.2738 -1.2027 -2.9228 30 7 3.1681 -0.3621 -1.9258 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 3.1263 -0.7995 1.2056 35 1 1.6054 -1.7198 1.2952 36 1 2.6943 -2.3341 3.2190 37 1 3.7835 -1.3697 4.2611 38 1 1.1791 -3.6121 3.8974 39 1 0.7388 -3.8940 5.6106 40 1 -0.2853 -1.7038 3.7216 41 1 -1.2378 -2.8050 4.7706 42 1 -0.5287 -1.6521 6.8071 43 1 -0.7108 -0.2929 5.6546 44 1 2.8970 -0.5658 7.3755 45 1 1.5720 -1.5862 7.9848 46 1 0.5216 0.9620 7.3688 47 1 -0.4957 3.4671 9.3224 48 1 0.8347 0.9029 4.9283 49 1 2.5584 0.7621 5.3887 50 1 0.5414 -2.2572 -1.4619 51 1 2.0022 -2.9046 -3.5450 52 1 4.0574 -1.2086 -3.6659 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112559408.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:25 Heat of formation + Delta-G solvation = 36.662815 kcal Electronic energy + Delta-G solvation = -31419.771174 eV Core-core repulsion = 27420.232875 eV Total energy + Delta-G solvation = -3999.538299 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.20334 -41.77055 -39.95513 -36.54449 -36.32631 -35.31743 -33.51233 -31.60191 -31.11578 -30.86666 -30.48151 -29.09920 -26.92667 -26.48050 -25.34578 -24.18282 -23.60850 -21.94226 -21.23095 -21.06427 -20.29020 -19.89945 -19.00294 -18.54317 -17.60553 -17.34159 -16.82960 -16.55372 -16.20463 -15.77851 -15.50989 -15.47665 -15.14655 -14.97473 -14.79426 -14.72511 -14.31601 -14.26423 -14.09915 -13.85890 -13.80245 -13.47518 -13.32566 -13.10236 -12.94768 -12.79511 -12.68246 -12.50366 -12.26128 -12.24341 -12.05858 -11.81460 -11.76187 -11.65839 -11.56149 -11.54519 -11.49523 -11.41378 -10.95743 -10.91150 -10.38409 -9.69763 -9.49459 -8.98829 -7.94554 -5.23095 1.01067 1.40176 1.45673 1.48807 1.52301 1.54897 2.01164 2.02950 2.55366 3.25886 3.38697 3.41297 3.49529 3.57626 3.61708 3.72915 3.99913 4.07929 4.14752 4.18180 4.19669 4.21198 4.29413 4.39054 4.42114 4.43691 4.50541 4.59996 4.68241 4.70005 4.73001 4.73700 4.78768 4.83439 4.92673 4.96727 4.97721 5.02470 5.05535 5.16327 5.19087 5.22276 5.24126 5.33735 5.36405 5.45116 5.48447 5.50642 5.80223 6.16916 6.26817 6.54634 6.83773 7.05676 7.33382 8.10720 8.32512 9.28828 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.002332 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.167040 B =12005.096233 C =12524.693631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.179 3.821 3 H 0.080 0.920 4 C -0.130 4.130 5 C 0.534 3.466 6 O -0.582 6.582 7 N -0.612 5.612 8 C 0.103 3.897 9 C -0.090 4.090 10 H 0.113 0.887 11 C -0.104 4.104 12 C -0.113 4.113 13 C -0.106 4.106 14 C -0.069 4.069 15 C 0.171 3.829 16 N -0.743 5.743 17 C -0.241 4.241 18 H 0.078 0.922 19 C -0.079 4.079 20 N -0.971 5.971 21 Si 0.973 3.027 22 H -0.278 1.278 23 H -0.299 1.299 24 H -0.276 1.276 25 C 0.128 3.872 26 N -0.374 5.374 27 C 0.056 3.944 28 C -0.282 4.282 29 C 0.037 3.963 30 N -0.347 5.347 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.130 0.870 36 H 0.115 0.885 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.032 0.968 44 H 0.024 0.976 45 H 0.029 0.971 46 H 0.372 0.628 47 H 0.249 0.751 48 H 0.046 0.954 49 H 0.054 0.946 50 H 0.202 0.798 51 H 0.170 0.830 52 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.533 -19.261 -22.556 30.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.076 3.924 3 H 0.098 0.902 4 C -0.171 4.171 5 C 0.324 3.676 6 O -0.462 6.462 7 N -0.344 5.344 8 C -0.018 4.018 9 C -0.110 4.110 10 H 0.131 0.869 11 C -0.141 4.141 12 C -0.151 4.151 13 C -0.144 4.144 14 C -0.070 4.070 15 C 0.044 3.956 16 N -0.385 5.385 17 C -0.373 4.373 18 H 0.096 0.904 19 C -0.271 4.271 20 N -0.622 5.622 21 Si 0.802 3.198 22 H -0.204 1.204 23 H -0.226 1.226 24 H -0.202 1.202 25 C 0.005 3.995 26 N -0.157 5.157 27 C -0.090 4.090 28 C -0.311 4.311 29 C -0.148 4.148 30 N -0.168 5.168 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.124 0.876 35 H 0.148 0.852 36 H 0.133 0.867 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.051 0.949 44 H 0.042 0.958 45 H 0.047 0.953 46 H 0.204 0.796 47 H 0.058 0.942 48 H 0.064 0.936 49 H 0.072 0.928 50 H 0.219 0.781 51 H 0.187 0.813 52 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 4.748 -17.618 -21.865 28.479 hybrid contribution -0.589 0.946 0.811 1.378 sum 4.160 -16.672 -21.055 27.177 Atomic orbital electron populations 1.22226 0.91280 1.04373 1.03931 1.20772 0.95843 0.95721 0.80040 0.90164 1.21935 1.04328 1.01126 0.89695 1.20402 0.78474 0.85043 0.83684 1.90718 1.42455 1.26709 1.86330 1.48977 1.54743 1.26256 1.04433 1.22819 0.95297 0.85635 0.98081 1.22739 0.97964 0.94170 0.96087 0.86928 1.22369 0.92730 0.96464 1.02532 1.22794 0.99208 0.96527 0.96553 1.22674 0.94020 0.98720 0.98955 1.22127 0.96320 0.95040 0.93528 1.20788 0.94769 0.88911 0.91119 1.42557 1.51708 1.30713 1.13563 1.19609 1.19391 1.07043 0.91267 0.90387 1.25579 1.00191 0.98969 1.02320 1.69829 1.33347 1.20885 1.38182 0.85216 0.77375 0.77102 0.80103 1.20419 1.22551 1.20184 1.22114 0.99635 0.95439 0.82334 1.48918 1.19555 1.24593 1.22589 1.23109 1.00543 0.90254 0.95084 1.21877 0.98868 1.06941 1.03464 1.24423 1.00111 0.93440 0.96853 1.77378 1.04392 1.25710 1.09340 0.91706 0.89296 0.90268 0.87555 0.85166 0.86711 0.89960 0.88634 0.90463 0.92437 0.90954 0.92338 0.94889 0.95827 0.95274 0.79602 0.94191 0.93566 0.92770 0.78133 0.81264 0.78020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 8.58 71.98 0.62 -2.17 16 2 C 0.18 3.52 3.05 44.99 0.14 3.66 16 3 H 0.08 2.07 7.96 -2.39 -0.02 2.05 16 4 C -0.13 -2.21 4.48 29.85 0.13 -2.07 16 5 C 0.53 13.79 7.60 87.66 0.67 14.46 16 6 O -0.58 -20.39 14.23 -3.03 -0.04 -20.43 16 7 N -0.61 -15.24 2.53 -808.41 -2.04 -17.28 16 8 C 0.10 1.69 6.34 86.52 0.55 2.23 16 9 C -0.09 -1.69 3.62 -9.29 -0.03 -1.73 16 10 H 0.11 1.83 7.88 -2.39 -0.02 1.81 16 11 C -0.10 -1.57 6.28 31.61 0.20 -1.37 16 12 C -0.11 -2.41 6.57 32.68 0.21 -2.20 16 13 C -0.11 -3.28 5.50 32.44 0.18 -3.10 16 14 C -0.07 -2.04 0.67 -50.69 -0.03 -2.08 16 15 C 0.17 6.44 5.10 86.38 0.44 6.88 16 16 N -0.74 -37.44 5.23 -343.44 -1.79 -39.24 16 17 C -0.24 -13.44 9.99 84.04 0.84 -12.60 16 18 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 19 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 20 N -0.97 -61.00 13.06 21.65 0.28 -60.72 16 21 Si 0.97 46.74 29.55 68.60 2.03 48.76 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 25 C 0.13 4.29 5.51 86.51 0.48 4.77 16 26 N -0.37 -7.08 3.52 -327.50 -1.15 -8.24 16 27 C 0.06 0.74 10.59 83.54 0.89 1.63 16 28 C -0.28 -3.70 10.80 21.99 0.24 -3.46 16 29 C 0.04 0.62 12.03 85.24 1.03 1.64 16 30 N -0.35 -7.92 12.58 -57.02 -0.72 -8.64 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 1.00 7.16 -2.39 -0.02 0.98 16 33 H 0.08 1.85 5.95 -2.39 -0.01 1.84 16 34 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.13 1.37 7.95 -2.38 -0.02 1.35 16 36 H 0.11 1.06 6.60 -2.39 -0.02 1.04 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.10 0.89 7.45 -2.39 -0.02 0.87 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 1.27 7.67 -2.39 -0.02 1.26 16 41 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.06 1.96 7.96 -2.39 -0.02 1.94 16 43 H 0.03 1.22 7.42 -2.38 -0.02 1.20 16 44 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.37 20.48 7.06 -92.71 -0.65 19.83 16 47 H 0.25 15.29 8.31 -92.70 -0.77 14.52 16 48 H 0.05 1.90 7.15 -2.38 -0.02 1.89 16 49 H 0.05 2.01 7.95 -2.39 -0.02 1.99 16 50 H 0.20 1.23 7.27 -2.91 -0.02 1.21 16 51 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 52 H 0.20 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -77.55 406.88 3.81 -73.74 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: 0.26 Total: 31.67 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 7.00 Total: 0.37 kcal Atomic # 7 Polarization: -128.68 SS G_CDS: -5.43 Total: -134.11 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.04 Total: -20.43 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal Total: -77.55 3.81 -73.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112559408.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.400 kcal (2) G-P(sol) polarization free energy of solvation -77.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds