Wall clock time and date at job start Wed Apr 1 2020 04:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47104 * 2 1 4 4 C 1.50693 * 109.47357 * 239.99863 * 2 1 3 5 5 O 1.21282 * 120.00122 * 240.00346 * 4 2 1 6 6 N 1.34779 * 120.00364 * 59.99981 * 4 2 1 7 7 C 1.48115 * 127.83898 * 0.02921 * 6 4 2 8 8 C 1.54322 * 104.69734 * 140.23913 * 7 6 4 9 9 H 1.09002 * 111.85544 * 262.43890 * 8 7 6 10 10 C 1.54161 * 108.86389 * 137.43628 * 8 7 6 11 11 C 1.54845 * 104.32948 * 271.22958 * 10 8 7 12 12 C 1.55777 * 102.30976 * 321.13568 * 11 10 8 13 13 C 1.54152 * 103.88369 * 39.34727 * 12 11 10 14 14 C 1.53006 * 111.82111 * 212.53304 * 13 12 11 15 15 N 1.46500 * 109.46998 * 299.25791 * 14 13 12 16 16 C 1.36931 * 120.00396 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99774 * 359.97438 * 16 15 14 18 18 C 1.38806 * 120.00545 * 180.02562 * 16 15 14 19 19 N 1.31622 * 119.99833 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00256 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47110 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47258 * 119.99748 * 20 18 16 23 23 H 1.48508 * 109.46891 * 239.99707 * 20 18 16 24 24 C 1.48111 * 127.84580 * 179.97438 * 6 4 2 25 25 C 1.50700 * 109.47080 * 119.99487 * 2 1 3 26 26 C 1.39869 * 126.03834 * 60.02550 * 25 2 1 27 27 N 1.30834 * 108.20602 * 179.97438 * 26 25 2 28 28 N 1.40086 * 108.20247 * 359.97438 * 27 26 25 29 29 C 1.46497 * 126.03608 * 179.97438 * 28 27 26 30 30 C 1.34939 * 107.92544 * 359.75897 * 28 27 26 31 31 H 1.08998 * 109.47104 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47114 * 300.00538 * 1 2 3 33 33 H 1.09000 * 109.46683 * 59.99938 * 1 2 3 34 34 H 1.08998 * 110.39758 * 21.43112 * 7 6 4 35 35 H 1.09002 * 110.39255 * 259.03961 * 7 6 4 36 36 H 1.08997 * 110.46441 * 29.94467 * 10 8 7 37 37 H 1.09000 * 110.46594 * 152.52299 * 10 8 7 38 38 H 1.09007 * 110.75518 * 80.12379 * 11 10 8 39 39 H 1.09000 * 110.76258 * 203.32046 * 11 10 8 40 40 H 1.09005 * 111.74403 * 280.24776 * 12 11 10 41 41 H 1.09001 * 109.59254 * 157.39903 * 12 11 10 42 42 H 1.08993 * 109.46955 * 59.26017 * 14 13 12 43 43 H 1.09000 * 109.47050 * 179.25846 * 14 13 12 44 44 H 0.97010 * 119.99909 * 359.97438 * 15 14 13 45 45 H 0.97001 * 119.99731 * 180.02562 * 19 18 16 46 46 H 1.09001 * 110.39183 * 100.96357 * 24 6 4 47 47 H 1.09006 * 110.39530 * 338.57654 * 24 6 4 48 48 H 1.08006 * 125.89979 * 359.95811 * 26 25 2 49 49 H 1.09001 * 109.47193 * 89.97511 * 29 28 27 50 50 H 1.09002 * 109.47485 * 209.97935 * 29 28 27 51 51 H 1.09010 * 109.47279 * 329.98222 * 29 28 27 52 52 H 1.08001 * 126.13035 * 180.23558 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 0.8744 0.9281 -2.7905 8 6 1.5841 1.5778 -3.9971 9 1 2.2232 2.4070 -3.6937 10 6 0.5225 1.9979 -5.0329 11 6 0.3459 0.7477 -5.9293 12 6 1.8060 0.2193 -6.0537 13 6 2.3964 0.4287 -4.6452 14 6 3.8925 0.7453 -4.6969 15 7 4.6071 -0.3729 -5.3174 16 6 5.9665 -0.3156 -5.4719 17 1 6.5118 0.5543 -5.1367 18 6 6.6435 -1.3748 -6.0603 19 7 5.9789 -2.4347 -6.4694 20 14 8.4979 -1.2962 -6.2717 21 1 9.0031 -0.0073 -5.7344 22 1 9.1282 -2.4211 -5.5352 23 1 8.8364 -1.3974 -7.7141 24 6 2.1011 -0.8067 -3.7692 25 6 2.0323 -0.7103 1.2305 26 6 1.7738 -2.0408 1.5758 27 7 2.3782 -2.2941 2.7082 28 7 3.0418 -1.1311 3.1197 29 6 3.8412 -0.9802 4.3381 30 6 2.8187 -0.1757 2.1932 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 0.8415 1.6220 -1.9505 35 1 -0.1329 0.6155 -3.0656 36 1 -0.4158 2.2470 -4.5373 37 1 0.8787 2.8423 -5.6228 38 1 -0.3047 0.0167 -5.4491 39 1 -0.0446 1.0261 -6.9082 40 1 2.3769 0.7805 -6.7935 41 1 1.7908 -0.8408 -6.3068 42 1 4.0524 1.6495 -5.2842 43 1 4.2666 0.8987 -3.6847 44 1 4.1173 -1.1544 -5.6183 45 1 6.4521 -3.1751 -6.8803 46 1 1.2839 -1.3881 -4.1960 47 1 2.9945 -1.4230 -3.6683 48 1 1.1780 -2.7387 1.0061 49 1 4.8784 -1.2402 4.1267 50 1 3.7883 0.0529 4.6818 51 1 3.4515 -1.6411 5.1125 52 1 3.1973 0.8355 2.2173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112595242.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:58 Heat of formation + Delta-G solvation = 32.837028 kcal Electronic energy + Delta-G solvation = -31618.466305 eV Core-core repulsion = 27618.762108 eV Total energy + Delta-G solvation = -3999.704198 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.29632 -41.58851 -39.69740 -36.48761 -35.65321 -35.20390 -33.59234 -33.35371 -31.09167 -30.57330 -30.01217 -27.51127 -27.30359 -26.45795 -25.74653 -24.56647 -23.47174 -22.08674 -21.56870 -21.07434 -20.00027 -19.80704 -19.06018 -17.77040 -17.71039 -16.96133 -16.67095 -16.51425 -16.24812 -15.94981 -15.67539 -15.26017 -15.14877 -15.02486 -14.79388 -14.72118 -14.45423 -13.92176 -13.80566 -13.66577 -13.49990 -13.39381 -13.36204 -13.10319 -12.99980 -12.89416 -12.76986 -12.45944 -12.41806 -12.14681 -12.09328 -11.70923 -11.67409 -11.59673 -11.50924 -11.44440 -11.42482 -11.26273 -10.96550 -10.65341 -10.32638 -9.62293 -9.32140 -9.00867 -7.97789 -5.25739 0.95606 1.41217 1.43680 1.53037 1.66971 1.74217 1.76895 2.22435 2.52392 3.35199 3.39064 3.54089 3.61065 3.74977 3.79659 4.00530 4.19587 4.21957 4.25089 4.26815 4.28858 4.32622 4.37631 4.42243 4.45288 4.51361 4.55076 4.59888 4.67844 4.78678 4.80458 4.82579 4.84963 4.87274 4.95293 5.03301 5.05764 5.11036 5.15049 5.23798 5.25887 5.35053 5.36525 5.39952 5.43240 5.44930 5.57707 5.59755 5.66052 6.17364 6.24572 6.72754 6.74109 7.30428 7.30968 8.08094 8.30925 9.26115 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008467 B = 0.003496 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3306.250704 B = 8006.493570 C =10554.914127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.011 4.011 3 H 0.127 0.873 4 C 0.524 3.476 5 O -0.592 6.592 6 N -0.619 5.619 7 C 0.104 3.896 8 C -0.093 4.093 9 H 0.092 0.908 10 C -0.103 4.103 11 C -0.116 4.116 12 C -0.107 4.107 13 C -0.070 4.070 14 C 0.175 3.825 15 N -0.740 5.740 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.076 4.076 19 N -0.969 5.969 20 Si 0.972 3.028 21 H -0.265 1.265 22 H -0.297 1.297 23 H -0.288 1.288 24 C 0.120 3.880 25 C -0.237 4.237 26 C 0.062 3.938 27 N -0.343 5.343 28 N -0.383 5.383 29 C 0.094 3.906 30 C 0.067 3.933 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.042 0.958 42 H 0.025 0.975 43 H -0.001 1.001 44 H 0.374 0.626 45 H 0.250 0.750 46 H 0.074 0.926 47 H 0.033 0.967 48 H 0.168 0.832 49 H 0.075 0.925 50 H 0.123 0.877 51 H 0.090 0.910 52 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.308 15.130 16.421 28.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.033 4.033 3 H 0.145 0.855 4 C 0.314 3.686 5 O -0.472 6.472 6 N -0.352 5.352 7 C -0.017 4.017 8 C -0.113 4.113 9 H 0.111 0.889 10 C -0.140 4.140 11 C -0.153 4.153 12 C -0.145 4.145 13 C -0.072 4.072 14 C 0.048 3.952 15 N -0.382 5.382 16 C -0.376 4.376 17 H 0.090 0.910 18 C -0.269 4.269 19 N -0.620 5.620 20 Si 0.801 3.199 21 H -0.190 1.190 22 H -0.225 1.225 23 H -0.214 1.214 24 C -0.003 4.003 25 C -0.249 4.249 26 C -0.123 4.123 27 N -0.166 5.166 28 N -0.165 5.165 29 C -0.046 4.046 30 C -0.080 4.080 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.131 0.869 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.043 0.957 43 H 0.017 0.983 44 H 0.206 0.794 45 H 0.059 0.941 46 H 0.092 0.908 47 H 0.052 0.948 48 H 0.185 0.815 49 H 0.093 0.907 50 H 0.141 0.859 51 H 0.109 0.891 52 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -17.417 13.800 17.694 28.406 hybrid contribution 1.595 -0.870 -1.273 2.218 sum -15.822 12.930 16.422 26.214 Atomic orbital electron populations 1.21872 0.90186 1.02680 1.04537 1.19478 0.98615 0.99330 0.85917 0.85530 1.21195 0.79056 0.84102 0.84219 1.90730 1.40332 1.29449 1.86656 1.49073 1.51307 1.30624 1.04151 1.22968 0.94362 0.86242 0.98113 1.22769 0.96636 0.96238 0.95641 0.88928 1.22332 0.98464 0.97310 0.95930 1.22654 0.94033 0.97912 1.00733 1.22427 0.97225 1.00285 0.94577 1.22137 0.93908 0.95345 0.95769 1.20677 0.90440 0.90158 0.93912 1.42530 1.04165 1.19168 1.72337 1.19644 0.85260 1.01337 1.31354 0.91018 1.25563 1.02445 0.96516 1.02327 1.69831 1.35945 1.08125 1.48058 0.85090 0.80295 0.77389 0.77118 1.18968 1.22500 1.21437 1.22225 0.98927 0.96006 0.83182 1.19722 1.09757 0.95225 1.00190 1.23656 0.98689 0.96604 0.93368 1.77253 1.15082 1.07658 1.16564 1.48760 1.39919 1.07675 1.20125 1.22183 0.94149 1.05778 0.82473 1.22873 0.98065 0.97142 0.89965 0.93587 0.89468 0.89495 0.86914 0.88255 0.87939 0.90883 0.90584 0.90424 0.92442 0.93864 0.95699 0.98347 0.79414 0.94091 0.90805 0.94839 0.81458 0.90660 0.85899 0.89105 0.77031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.83 71.98 0.64 -1.24 16 2 C -0.01 -0.23 2.42 -12.29 -0.03 -0.26 16 3 H 0.13 1.84 7.92 -2.39 -0.02 1.82 16 4 C 0.52 16.68 7.22 87.65 0.63 17.31 16 5 O -0.59 -26.53 15.64 -3.04 -0.05 -26.57 16 6 N -0.62 -17.40 3.30 -808.43 -2.67 -20.07 16 7 C 0.10 1.70 4.64 86.52 0.40 2.10 16 8 C -0.09 -1.85 3.58 -9.29 -0.03 -1.88 16 9 H 0.09 1.80 7.88 -2.39 -0.02 1.78 16 10 C -0.10 -1.47 6.08 31.62 0.19 -1.28 16 11 C -0.12 -2.16 6.86 32.18 0.22 -1.94 16 12 C -0.11 -3.17 5.19 31.94 0.17 -3.00 16 13 C -0.07 -2.20 0.62 -50.69 -0.03 -2.23 16 14 C 0.17 7.35 5.14 86.38 0.44 7.79 16 15 N -0.74 -39.93 4.93 -343.46 -1.69 -41.63 16 16 C -0.24 -14.51 9.99 84.03 0.84 -13.67 16 17 H 0.07 4.12 7.83 -2.91 -0.02 4.09 16 18 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 19 N -0.97 -62.64 13.06 21.65 0.28 -62.36 16 20 Si 0.97 48.81 29.55 68.60 2.03 50.84 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 23 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 24 C 0.12 4.22 5.81 86.51 0.50 4.73 16 25 C -0.24 -5.91 4.37 -20.14 -0.09 -6.00 16 26 C 0.06 1.87 10.77 85.24 0.92 2.78 16 27 N -0.34 -10.53 12.58 -57.02 -0.72 -11.25 16 28 N -0.38 -8.80 4.01 -369.56 -1.48 -10.28 16 29 C 0.09 1.19 11.47 127.77 1.47 2.66 16 30 C 0.07 1.36 11.38 83.54 0.95 2.31 16 31 H 0.04 0.79 8.02 -2.39 -0.02 0.77 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 0.83 5.35 -2.39 -0.01 0.81 16 34 H 0.11 1.10 6.55 -2.39 -0.02 1.09 16 35 H 0.10 1.17 7.49 -2.39 -0.02 1.15 16 36 H 0.10 0.81 7.74 -2.39 -0.02 0.79 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.06 1.90 7.96 -2.38 -0.02 1.88 16 41 H 0.04 1.46 7.79 -2.39 -0.02 1.44 16 42 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 44 H 0.37 21.51 6.91 -92.70 -0.64 20.87 16 45 H 0.25 15.64 8.31 -92.71 -0.77 14.87 16 46 H 0.07 2.40 7.67 -2.39 -0.02 2.38 16 47 H 0.03 1.59 6.99 -2.38 -0.02 1.58 16 48 H 0.17 4.99 8.06 -2.91 -0.02 4.97 16 49 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 52 H 0.21 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -90.01 408.05 3.62 -86.39 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.27 Total: 30.92 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 7.65 Total: 4.02 kcal Atomic # 7 Polarization: -139.31 SS G_CDS: -6.28 Total: -145.59 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.05 Total: -26.57 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 2.03 Total: 50.84 kcal Total: -90.01 3.62 -86.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112595242.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.225 kcal (2) G-P(sol) polarization free energy of solvation -90.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds