Wall clock time and date at job start Wed Apr 1 2020 05:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47134 * 2 1 4 4 C 1.52994 * 109.47342 * 120.00318 * 2 1 3 5 5 C 1.50707 * 109.46970 * 294.99911 * 4 2 1 6 6 O 1.21279 * 120.00089 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00051 * 179.97438 * 5 4 2 8 8 C 1.46495 * 120.00083 * 180.02562 * 7 5 4 9 9 C 1.53956 * 113.57782 * 252.72396 * 8 7 5 10 10 C 1.52913 * 86.78177 * 220.65945 * 9 8 7 11 11 C 1.52906 * 121.14059 * 150.61233 * 10 9 8 12 12 C 1.53950 * 86.77997 * 100.82263 * 11 10 9 13 13 N 1.46500 * 113.57474 * 139.33840 * 12 11 10 14 14 C 1.36943 * 119.99725 * 107.28316 * 13 12 11 15 15 H 1.07996 * 120.00087 * 359.97438 * 14 13 12 16 16 C 1.38814 * 119.99589 * 180.02562 * 14 13 12 17 17 N 1.31616 * 120.00368 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99794 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47039 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47323 * 119.99400 * 18 16 14 21 21 H 1.48501 * 109.47004 * 239.99651 * 18 16 14 22 22 C 1.52907 * 121.13788 * 259.18219 * 10 9 8 23 23 C 1.52920 * 88.04220 * 24.89537 * 10 9 8 24 24 C 1.50706 * 109.47335 * 240.00226 * 2 1 3 25 25 C 1.39870 * 126.03571 * 300.02354 * 24 2 1 26 26 N 1.30836 * 108.20019 * 179.71573 * 25 24 2 27 27 N 1.40090 * 108.20534 * 0.24683 * 26 25 24 28 28 C 1.46502 * 126.03499 * 179.97438 * 27 26 25 29 29 C 1.34942 * 107.92509 * 359.97438 * 27 26 25 30 30 H 1.09000 * 109.47285 * 299.99838 * 1 2 3 31 31 H 1.09003 * 109.47155 * 60.00313 * 1 2 3 32 32 H 1.09003 * 109.47134 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47651 * 54.99517 * 4 2 1 34 34 H 1.09001 * 109.47955 * 175.00330 * 4 2 1 35 35 H 0.97000 * 119.99534 * 0.02562 * 7 5 4 36 36 H 1.08998 * 112.82409 * 23.90772 * 8 7 5 37 37 H 1.08992 * 113.66291 * 335.12867 * 9 8 7 38 38 H 1.08998 * 113.66225 * 106.19215 * 9 8 7 39 39 H 1.08993 * 113.66546 * 215.29936 * 11 10 9 40 40 H 1.09007 * 113.66033 * 346.35141 * 11 10 9 41 41 H 1.08997 * 113.58030 * 270.13308 * 12 11 10 42 42 H 0.96996 * 120.00262 * 287.28071 * 13 12 11 43 43 H 0.96999 * 120.00455 * 180.02562 * 17 16 14 44 44 H 1.08997 * 113.66441 * 13.64273 * 22 10 9 45 45 H 1.09004 * 113.66421 * 144.61662 * 22 10 9 46 46 H 1.08993 * 113.66632 * 220.62827 * 23 10 9 47 47 H 1.09003 * 113.74324 * 89.58328 * 23 10 9 48 48 H 1.08002 * 125.90382 * 359.97438 * 25 24 2 49 49 H 1.09003 * 109.47146 * 90.02383 * 28 27 26 50 50 H 1.09004 * 109.46833 * 210.02192 * 28 27 26 51 51 H 1.09002 * 109.47194 * 330.02151 * 28 27 26 52 52 H 1.08002 * 126.12737 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0570 2.4766 6 8 1.0109 1.0869 2.3634 7 7 1.9845 -0.3920 3.7001 8 6 1.5965 0.3643 4.8933 9 6 2.7720 1.0928 5.5699 10 6 2.1579 0.6641 6.9031 11 6 3.0313 0.4232 8.1348 12 6 2.5907 1.8187 8.6128 13 7 2.3066 1.8837 10.0485 14 6 3.1743 2.5278 10.8897 15 1 4.0681 2.9875 10.4947 16 6 2.9053 2.5889 12.2501 17 7 1.8161 2.0282 12.7315 18 14 4.0884 3.4681 13.3975 19 1 5.2275 4.0099 12.6137 20 1 3.3814 4.5823 14.0787 21 1 4.5972 2.5107 14.4123 22 6 1.3328 1.6392 7.7435 23 6 1.4953 -0.4991 6.1639 24 6 2.0324 -0.7104 -1.2305 25 6 1.7731 -2.0407 -1.5761 26 7 2.3723 -2.2921 -2.7117 27 7 3.0375 -1.1295 -3.1224 28 6 3.8333 -0.9775 -4.3430 29 6 2.8157 -0.1746 -2.1951 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -1.7198 1.2951 34 1 3.1264 -0.7995 1.2056 35 1 2.4884 -1.2159 3.7907 36 1 0.7262 0.9990 4.7271 37 1 3.7421 0.6385 5.3690 38 1 2.7669 2.1714 5.4127 39 1 2.6774 -0.3888 8.7700 40 1 4.0955 0.3536 7.9096 41 1 3.2442 2.6223 8.2733 42 1 1.5039 1.4705 10.4032 43 1 1.6280 2.0712 13.6821 44 1 1.0403 2.5411 7.2059 45 1 0.5006 1.1693 8.2677 46 1 0.4706 -0.6922 6.4811 47 1 2.1056 -1.4017 6.1292 48 1 1.1775 -2.7385 -1.0064 49 1 3.1908 -0.6390 -5.1558 50 1 4.6218 -0.2441 -4.1736 51 1 4.2795 -1.9361 -4.6076 52 1 3.1925 0.8372 -2.2204 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121462663.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:08 Heat of formation + Delta-G solvation = 86.577659 kcal Electronic energy + Delta-G solvation = -29082.172549 eV Core-core repulsion = 25084.798720 eV Total energy + Delta-G solvation = -3997.373829 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.64449 -40.55858 -39.34714 -36.12537 -35.34658 -33.62828 -33.13853 -32.18536 -30.09231 -29.54063 -28.01542 -26.91634 -25.74366 -25.21817 -24.19599 -23.31458 -22.15540 -21.46785 -20.63311 -20.10494 -19.68191 -17.84394 -17.38239 -16.96352 -16.79829 -16.22520 -15.83205 -15.67763 -15.17169 -14.81649 -14.74099 -14.56931 -14.17608 -13.90854 -13.74882 -13.41344 -13.35576 -13.13669 -12.94102 -12.75703 -12.68255 -12.50444 -12.32663 -12.11784 -11.73072 -11.62993 -11.43314 -11.34616 -11.24294 -10.98077 -10.85674 -10.72780 -10.68538 -10.32512 -10.03647 -9.82946 -9.80882 -9.75188 -9.70217 -9.30983 -9.00326 -8.84325 -8.73246 -6.92827 -5.76372 -3.04591 1.50228 2.12526 2.41230 2.54421 3.12784 3.43703 3.49494 3.51664 4.07736 4.42611 4.49724 4.58267 4.59411 4.62435 4.65315 4.72277 4.80481 4.82994 4.87059 4.90881 4.94145 5.07684 5.28472 5.29572 5.39754 5.42696 5.43911 5.47744 5.59655 5.67904 5.75135 5.82691 5.89490 5.94756 5.97802 6.01486 6.07929 6.12573 6.20411 6.23020 6.26315 6.33797 6.39583 6.45755 6.56816 6.59895 6.67100 6.96396 7.16815 7.31129 7.43122 7.72224 8.15400 8.42619 9.53661 10.12758 10.47100 11.46274 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.032761 B = 0.001428 C = 0.001407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.479160 B =19600.671631 C =19890.034038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.006 3.994 3 H 0.082 0.918 4 C -0.133 4.133 5 C 0.512 3.488 6 O -0.538 6.538 7 N -0.721 5.721 8 C 0.123 3.877 9 C -0.124 4.124 10 C -0.102 4.102 11 C -0.149 4.149 12 C 0.168 3.832 13 N -0.714 5.714 14 C -0.241 4.241 15 H 0.071 0.929 16 C -0.014 4.014 17 N -0.933 5.933 18 Si 0.906 3.094 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.129 4.129 23 C -0.131 4.131 24 C -0.228 4.228 25 C 0.055 3.945 26 N -0.299 5.299 27 N -0.379 5.379 28 C 0.102 3.898 29 C 0.056 3.944 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.399 0.601 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.060 0.940 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.181 0.819 49 H 0.073 0.927 50 H 0.087 0.913 51 H 0.088 0.912 52 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.856 -8.799 -33.639 34.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.014 4.014 3 H 0.100 0.900 4 C -0.173 4.173 5 C 0.299 3.701 6 O -0.415 6.415 7 N -0.372 5.372 8 C 0.019 3.981 9 C -0.163 4.163 10 C -0.103 4.103 11 C -0.190 4.190 12 C 0.056 3.944 13 N -0.352 5.352 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.210 4.210 17 N -0.581 5.581 18 Si 0.737 3.263 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.168 4.168 23 C -0.169 4.169 24 C -0.240 4.240 25 C -0.132 4.132 26 N -0.121 5.121 27 N -0.161 5.161 28 C -0.040 4.040 29 C -0.090 4.090 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.233 0.767 36 H 0.131 0.869 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.219 0.781 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.101 0.899 48 H 0.198 0.802 49 H 0.092 0.908 50 H 0.105 0.895 51 H 0.107 0.893 52 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.866 -8.786 -34.665 35.810 hybrid contribution 0.569 0.398 1.424 1.585 sum 2.435 -8.388 -33.241 34.369 Atomic orbital electron populations 1.21931 0.94107 1.01487 1.02940 1.19111 0.96023 0.98149 0.88093 0.89984 1.21758 1.02907 1.00216 0.92459 1.20743 0.78923 0.85720 0.84763 1.90675 1.39709 1.24560 1.86581 1.46130 1.57537 1.27574 1.05912 1.22605 0.98746 0.94522 0.82255 1.23132 0.97812 1.00904 0.94433 1.22075 0.98759 0.96478 0.92972 1.23634 0.97873 1.02283 0.95186 1.21544 0.93924 0.94087 0.84843 1.42429 1.26802 1.65249 1.00694 1.19367 1.01969 1.27174 0.88748 0.91064 1.24752 0.97867 1.01383 0.96976 1.69667 1.26274 1.49394 1.12810 0.86131 0.80147 0.78951 0.81059 1.20540 1.21870 1.21898 1.23207 0.98661 0.97502 0.97387 1.23172 1.01492 0.97564 0.94664 1.20091 1.07873 0.95301 1.00690 1.23744 0.99252 0.96163 0.93995 1.77363 1.13546 1.06059 1.15101 1.48452 1.40337 1.08477 1.18874 1.21852 0.94470 1.04092 0.83549 1.22379 1.00216 0.95699 0.90671 0.90424 0.93043 0.93335 0.88954 0.89034 0.76706 0.86895 0.89961 0.91046 0.90333 0.92776 0.90817 0.78125 0.93555 0.92090 0.90056 0.90939 0.89947 0.80235 0.90798 0.89453 0.89326 0.80977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.82 37.16 0.33 -0.92 16 2 C 0.01 0.05 2.40 -91.77 -0.22 -0.17 16 3 H 0.08 0.71 7.92 -51.93 -0.41 0.30 16 4 C -0.13 -0.91 5.03 -27.88 -0.14 -1.05 16 5 C 0.51 5.09 7.55 -10.98 -0.08 5.01 16 6 O -0.54 -7.36 13.57 5.56 0.08 -7.28 16 7 N -0.72 -6.47 5.35 -52.85 -0.28 -6.76 16 8 C 0.12 1.38 4.24 -66.95 -0.28 1.10 16 9 C -0.12 -1.52 7.64 -26.28 -0.20 -1.72 16 10 C -0.10 -1.41 1.11 -154.71 -0.17 -1.58 16 11 C -0.15 -2.52 7.64 -26.28 -0.20 -2.72 16 12 C 0.17 3.33 4.48 -66.95 -0.30 3.03 16 13 N -0.71 -17.97 5.40 -52.47 -0.28 -18.26 16 14 C -0.24 -6.73 9.97 -15.06 -0.15 -6.88 16 15 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 16 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 17 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 18 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 C -0.13 -2.12 7.59 -26.28 -0.20 -2.32 16 23 C -0.13 -1.48 7.59 -26.28 -0.20 -1.68 16 24 C -0.23 -1.72 4.80 -105.05 -0.50 -2.23 16 25 C 0.05 0.44 11.54 -17.37 -0.20 0.24 16 26 N -0.30 -2.86 12.58 30.62 0.39 -2.48 16 27 N -0.38 -2.80 4.01 -68.16 -0.27 -3.08 16 28 C 0.10 0.35 11.47 59.85 0.69 1.03 16 29 C 0.06 0.38 11.38 -17.23 -0.20 0.19 16 30 H 0.08 0.82 5.95 -51.93 -0.31 0.51 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.36 8.02 -51.93 -0.42 -0.06 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.40 2.55 8.73 -40.82 -0.36 2.19 16 36 H 0.11 1.48 7.46 -51.93 -0.39 1.09 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 42 H 0.38 10.26 7.92 -40.82 -0.32 9.94 16 43 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.08 1.38 8.12 -51.93 -0.42 0.96 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 48 H 0.18 1.04 8.06 -52.49 -0.42 0.61 16 49 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 50 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 51 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 52 H 0.17 0.70 8.06 -52.49 -0.42 0.27 16 LS Contribution 423.90 15.07 6.39 6.39 Total: -1.00 -34.61 423.90 -9.35 -43.96 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -8.93 Total: 8.80 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -2.13 Total: -11.17 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: 0.27 Total: -58.10 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: 0.08 Total: -7.28 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -34.61 -9.35 -43.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121462663.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.541 kcal (2) G-P(sol) polarization free energy of solvation -34.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds