Wall clock time and date at job start Wed Apr 1 2020 05:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47134 * 2 1 4 4 C 1.52994 * 109.47342 * 120.00318 * 2 1 3 5 5 C 1.50707 * 109.46970 * 294.99911 * 4 2 1 6 6 O 1.21279 * 120.00089 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00051 * 179.97438 * 5 4 2 8 8 C 1.46495 * 120.00083 * 180.02562 * 7 5 4 9 9 C 1.53956 * 113.57782 * 252.72396 * 8 7 5 10 10 C 1.52913 * 86.78177 * 220.65945 * 9 8 7 11 11 C 1.52906 * 121.14059 * 150.61233 * 10 9 8 12 12 C 1.53950 * 86.77997 * 100.82263 * 11 10 9 13 13 N 1.46500 * 113.57474 * 139.33840 * 12 11 10 14 14 C 1.36943 * 119.99725 * 107.28316 * 13 12 11 15 15 H 1.07996 * 120.00087 * 359.97438 * 14 13 12 16 16 C 1.38814 * 119.99589 * 180.02562 * 14 13 12 17 17 N 1.31616 * 120.00368 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99794 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47039 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47323 * 119.99400 * 18 16 14 21 21 H 1.48501 * 109.47004 * 239.99651 * 18 16 14 22 22 C 1.52907 * 121.13788 * 259.18219 * 10 9 8 23 23 C 1.52920 * 88.04220 * 24.89537 * 10 9 8 24 24 C 1.50706 * 109.47335 * 240.00226 * 2 1 3 25 25 C 1.39870 * 126.03571 * 300.02354 * 24 2 1 26 26 N 1.30836 * 108.20019 * 179.71573 * 25 24 2 27 27 N 1.40090 * 108.20534 * 0.24683 * 26 25 24 28 28 C 1.46502 * 126.03499 * 179.97438 * 27 26 25 29 29 C 1.34942 * 107.92509 * 359.97438 * 27 26 25 30 30 H 1.09000 * 109.47285 * 299.99838 * 1 2 3 31 31 H 1.09003 * 109.47155 * 60.00313 * 1 2 3 32 32 H 1.09003 * 109.47134 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47651 * 54.99517 * 4 2 1 34 34 H 1.09001 * 109.47955 * 175.00330 * 4 2 1 35 35 H 0.97000 * 119.99534 * 0.02562 * 7 5 4 36 36 H 1.08998 * 112.82409 * 23.90772 * 8 7 5 37 37 H 1.08992 * 113.66291 * 335.12867 * 9 8 7 38 38 H 1.08998 * 113.66225 * 106.19215 * 9 8 7 39 39 H 1.08993 * 113.66546 * 215.29936 * 11 10 9 40 40 H 1.09007 * 113.66033 * 346.35141 * 11 10 9 41 41 H 1.08997 * 113.58030 * 270.13308 * 12 11 10 42 42 H 0.96996 * 120.00262 * 287.28071 * 13 12 11 43 43 H 0.96999 * 120.00455 * 180.02562 * 17 16 14 44 44 H 1.08997 * 113.66441 * 13.64273 * 22 10 9 45 45 H 1.09004 * 113.66421 * 144.61662 * 22 10 9 46 46 H 1.08993 * 113.66632 * 220.62827 * 23 10 9 47 47 H 1.09003 * 113.74324 * 89.58328 * 23 10 9 48 48 H 1.08002 * 125.90382 * 359.97438 * 25 24 2 49 49 H 1.09003 * 109.47146 * 90.02383 * 28 27 26 50 50 H 1.09004 * 109.46833 * 210.02192 * 28 27 26 51 51 H 1.09002 * 109.47194 * 330.02151 * 28 27 26 52 52 H 1.08002 * 126.12737 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0570 2.4766 6 8 1.0109 1.0869 2.3634 7 7 1.9845 -0.3920 3.7001 8 6 1.5965 0.3643 4.8933 9 6 2.7720 1.0928 5.5699 10 6 2.1579 0.6641 6.9031 11 6 3.0313 0.4232 8.1348 12 6 2.5907 1.8187 8.6128 13 7 2.3066 1.8837 10.0485 14 6 3.1743 2.5278 10.8897 15 1 4.0681 2.9875 10.4947 16 6 2.9053 2.5889 12.2501 17 7 1.8161 2.0282 12.7315 18 14 4.0884 3.4681 13.3975 19 1 5.2275 4.0099 12.6137 20 1 3.3814 4.5823 14.0787 21 1 4.5972 2.5107 14.4123 22 6 1.3328 1.6392 7.7435 23 6 1.4953 -0.4991 6.1639 24 6 2.0324 -0.7104 -1.2305 25 6 1.7731 -2.0407 -1.5761 26 7 2.3723 -2.2921 -2.7117 27 7 3.0375 -1.1295 -3.1224 28 6 3.8333 -0.9775 -4.3430 29 6 2.8157 -0.1746 -2.1951 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -1.7198 1.2951 34 1 3.1264 -0.7995 1.2056 35 1 2.4884 -1.2159 3.7907 36 1 0.7262 0.9990 4.7271 37 1 3.7421 0.6385 5.3690 38 1 2.7669 2.1714 5.4127 39 1 2.6774 -0.3888 8.7700 40 1 4.0955 0.3536 7.9096 41 1 3.2442 2.6223 8.2733 42 1 1.5039 1.4705 10.4032 43 1 1.6280 2.0712 13.6821 44 1 1.0403 2.5411 7.2059 45 1 0.5006 1.1693 8.2677 46 1 0.4706 -0.6922 6.4811 47 1 2.1056 -1.4017 6.1292 48 1 1.1775 -2.7385 -1.0064 49 1 3.1908 -0.6390 -5.1558 50 1 4.6218 -0.2441 -4.1736 51 1 4.2795 -1.9361 -4.6076 52 1 3.1925 0.8372 -2.2204 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121462663.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:06 Heat of formation + Delta-G solvation = 64.623334 kcal Electronic energy + Delta-G solvation = -29083.124560 eV Core-core repulsion = 25084.798720 eV Total energy + Delta-G solvation = -3998.325840 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.16436 -41.60559 -40.29728 -37.31761 -36.11068 -35.18699 -33.66155 -33.48924 -31.45439 -30.54109 -28.70232 -27.33039 -26.72088 -26.62966 -26.02119 -24.25944 -23.11631 -22.00802 -21.41669 -21.38390 -20.33341 -19.42699 -18.60794 -18.04668 -17.36627 -17.12211 -16.86221 -16.36601 -16.26823 -16.04863 -15.78756 -15.36561 -15.30126 -15.21299 -14.68396 -14.44173 -14.16258 -13.76754 -13.65141 -13.60575 -13.56603 -13.45359 -13.31989 -13.10621 -13.03228 -12.92735 -12.83921 -12.43372 -12.25941 -12.19851 -12.04512 -12.01994 -11.88193 -11.85079 -11.34832 -11.28284 -11.02921 -10.83268 -10.79273 -10.50326 -10.32960 -9.85898 -9.25346 -8.95933 -7.94024 -5.21957 1.00271 1.47626 1.48237 1.58369 1.73703 1.78619 1.87279 2.38948 2.57106 3.37793 3.54788 3.57100 3.65323 3.73997 3.87394 3.90736 4.01732 4.05124 4.18405 4.29544 4.30547 4.36065 4.38972 4.45761 4.48720 4.60924 4.64039 4.71586 4.74810 4.81540 4.83320 4.84272 4.86931 4.90002 4.97011 5.02470 5.08465 5.11716 5.12899 5.18833 5.27509 5.33420 5.46335 5.48513 5.53697 5.59780 5.73096 5.73673 5.79683 6.17949 6.28828 6.73199 6.79261 7.34331 7.43636 8.12437 8.35316 9.29707 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.032761 B = 0.001428 C = 0.001407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.479160 B =19600.671631 C =19890.034038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.014 3.986 3 H 0.070 0.930 4 C -0.124 4.124 5 C 0.510 3.490 6 O -0.579 6.579 7 N -0.710 5.710 8 C 0.132 3.868 9 C -0.119 4.119 10 C -0.090 4.090 11 C -0.138 4.138 12 C 0.145 3.855 13 N -0.729 5.729 14 C -0.243 4.243 15 H 0.076 0.924 16 C -0.077 4.077 17 N -0.971 5.971 18 Si 0.972 3.028 19 H -0.266 1.266 20 H -0.294 1.294 21 H -0.293 1.293 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.238 4.238 25 C 0.050 3.950 26 N -0.339 5.339 27 N -0.384 5.384 28 C 0.093 3.907 29 C 0.056 3.944 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.415 0.585 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.106 0.894 48 H 0.196 0.804 49 H 0.082 0.918 50 H 0.112 0.888 51 H 0.088 0.912 52 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.480 -9.651 -35.606 37.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.007 4.007 3 H 0.088 0.912 4 C -0.163 4.163 5 C 0.298 3.702 6 O -0.459 6.459 7 N -0.361 5.361 8 C 0.027 3.973 9 C -0.158 4.158 10 C -0.092 4.092 11 C -0.178 4.178 12 C 0.036 3.964 13 N -0.367 5.367 14 C -0.375 4.375 15 H 0.094 0.906 16 C -0.269 4.269 17 N -0.622 5.622 18 Si 0.801 3.199 19 H -0.190 1.190 20 H -0.221 1.221 21 H -0.220 1.220 22 C -0.162 4.162 23 C -0.156 4.156 24 C -0.250 4.250 25 C -0.135 4.135 26 N -0.161 5.161 27 N -0.166 5.166 28 C -0.047 4.047 29 C -0.090 4.090 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.252 0.748 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.205 0.795 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.124 0.876 48 H 0.213 0.787 49 H 0.101 0.899 50 H 0.131 0.869 51 H 0.107 0.893 52 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.534 -9.671 -36.702 38.119 hybrid contribution 0.069 0.702 1.919 2.045 sum 3.603 -8.969 -34.783 36.101 Atomic orbital electron populations 1.21866 0.94973 1.01712 1.01496 1.18977 0.95207 0.97701 0.88773 0.91174 1.21747 1.03986 1.00408 0.90204 1.21289 0.77997 0.85280 0.85624 1.90673 1.41567 1.26533 1.87141 1.45981 1.57311 1.27867 1.04978 1.22262 0.97591 0.94326 0.83169 1.23157 0.98943 1.00660 0.93000 1.21906 0.97549 0.97157 0.92553 1.23389 0.98895 0.99344 0.96210 1.21933 0.96117 0.95775 0.82584 1.42617 1.26123 1.65303 1.02658 1.19756 1.02128 1.26179 0.89405 0.90637 1.25554 0.99731 1.02986 0.98610 1.69820 1.28245 1.51404 1.12718 0.85093 0.78432 0.77507 0.78870 1.19010 1.22147 1.22030 1.23072 0.97329 0.98624 0.97159 1.23141 1.01666 0.97353 0.93473 1.20072 1.08691 0.95256 1.00950 1.24053 0.99028 0.96682 0.93775 1.77304 1.14952 1.07696 1.16104 1.48767 1.40135 1.07978 1.19706 1.22146 0.94962 1.04961 0.82618 1.22844 0.99516 0.96554 0.90132 0.92730 0.93523 0.92254 0.86801 0.87314 0.74753 0.88860 0.88214 0.92036 0.91619 0.91918 0.91310 0.79501 0.94062 0.91695 0.90810 0.90917 0.87580 0.78733 0.89944 0.86933 0.89322 0.78527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.82 71.98 0.64 -1.68 16 2 C 0.01 0.19 2.40 -11.54 -0.03 0.16 16 3 H 0.07 1.14 7.92 -2.39 -0.02 1.12 16 4 C -0.12 -1.37 5.03 29.85 0.15 -1.22 16 5 C 0.51 9.16 7.55 87.66 0.66 9.82 16 6 O -0.58 -15.50 13.57 -3.02 -0.04 -15.55 16 7 N -0.71 -10.78 5.35 -439.52 -2.35 -13.13 16 8 C 0.13 2.69 4.24 45.63 0.19 2.88 16 9 C -0.12 -2.65 7.64 30.89 0.24 -2.41 16 10 C -0.09 -2.36 1.11 -52.31 -0.06 -2.42 16 11 C -0.14 -4.52 7.64 30.88 0.24 -4.28 16 12 C 0.15 5.78 4.48 45.63 0.20 5.98 16 13 N -0.73 -37.44 5.40 -319.93 -1.73 -39.17 16 14 C -0.24 -13.68 9.97 84.03 0.84 -12.84 16 15 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 16 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 17 N -0.97 -60.10 13.06 21.65 0.28 -59.81 16 18 Si 0.97 46.52 29.55 68.60 2.03 48.55 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 20 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 21 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 22 C -0.12 -4.04 7.59 30.88 0.23 -3.80 16 23 C -0.12 -2.37 7.59 30.89 0.23 -2.14 16 24 C -0.24 -3.17 4.80 -20.14 -0.10 -3.26 16 25 C 0.05 0.72 11.54 85.24 0.98 1.71 16 26 N -0.34 -6.07 12.58 -57.02 -0.72 -6.79 16 27 N -0.38 -5.03 4.01 -369.55 -1.48 -6.51 16 28 C 0.09 0.46 11.47 127.77 1.47 1.93 16 29 C 0.06 0.65 11.38 83.54 0.95 1.60 16 30 H 0.05 1.16 5.95 -2.39 -0.01 1.14 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.80 8.02 -2.39 -0.02 0.78 16 33 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.42 3.69 8.73 -92.71 -0.81 2.88 16 36 H 0.09 2.35 7.46 -2.39 -0.02 2.34 16 37 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 41 H 0.07 2.77 8.10 -2.39 -0.02 2.75 16 42 H 0.37 20.53 7.92 -92.71 -0.73 19.80 16 43 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.07 2.53 8.12 -2.38 -0.02 2.52 16 46 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.11 1.69 8.12 -2.39 -0.02 1.68 16 48 H 0.20 1.88 8.06 -2.91 -0.02 1.86 16 49 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 50 H 0.11 -0.04 8.14 -2.38 -0.02 -0.06 16 51 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 52 H 0.20 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -76.53 423.90 2.67 -73.86 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: -0.62 Total: 32.52 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 7.31 Total: -13.97 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -6.00 Total: -125.42 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.04 Total: -15.55 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -76.53 2.67 -73.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121462663.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.486 kcal (2) G-P(sol) polarization free energy of solvation -76.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds