Wall clock time and date at job start Wed Apr 1 2020 05:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47031 * 2 1 4 4 C 1.53004 * 109.47142 * 239.99906 * 2 1 3 5 5 C 1.50703 * 109.46830 * 65.00038 * 4 2 1 6 6 O 1.21282 * 120.00325 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99822 * 180.02562 * 5 4 2 8 8 C 1.46497 * 119.99961 * 180.02562 * 7 5 4 9 9 C 1.53948 * 113.58037 * 155.00042 * 8 7 5 10 10 C 1.52908 * 86.78752 * 89.86710 * 9 8 7 11 11 C 1.52906 * 121.14082 * 150.61758 * 10 9 8 12 12 C 1.53954 * 86.88484 * 150.57014 * 11 10 9 13 13 N 1.46495 * 113.58384 * 220.70894 * 12 11 10 14 14 C 1.36932 * 119.99974 * 205.00190 * 13 12 11 15 15 H 1.07996 * 120.00485 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99871 * 179.97438 * 14 13 12 17 17 N 1.31623 * 120.00287 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00039 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47219 * 89.99713 * 18 16 14 20 20 H 1.48500 * 109.47302 * 209.99866 * 18 16 14 21 21 H 1.48503 * 109.47012 * 329.99603 * 18 16 14 22 22 C 1.52914 * 121.13550 * 259.18373 * 10 9 8 23 23 C 1.52907 * 88.04047 * 24.89729 * 10 9 8 24 24 C 1.50696 * 109.47120 * 120.00248 * 2 1 3 25 25 C 1.39867 * 126.04294 * 60.02603 * 24 2 1 26 26 N 1.30839 * 108.20108 * 179.97438 * 25 24 2 27 27 N 1.40078 * 108.20606 * 359.97438 * 26 25 24 28 28 C 1.46503 * 126.03495 * 180.02562 * 27 26 25 29 29 C 1.34942 * 107.93000 * 359.76064 * 27 26 25 30 30 H 1.09007 * 109.47052 * 60.00142 * 1 2 3 31 31 H 1.09000 * 109.47031 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47291 * 300.00105 * 1 2 3 33 33 H 1.08996 * 109.47416 * 305.00431 * 4 2 1 34 34 H 1.09000 * 109.47051 * 184.99428 * 4 2 1 35 35 H 0.97001 * 119.99900 * 359.97438 * 7 5 4 36 36 H 1.08999 * 112.87810 * 23.85307 * 8 7 5 37 37 H 1.08994 * 113.66498 * 335.39202 * 9 8 7 38 38 H 1.09005 * 113.74881 * 204.35142 * 9 8 7 39 39 H 1.09002 * 113.66405 * 265.09178 * 11 10 9 40 40 H 1.08998 * 113.66160 * 36.05328 * 11 10 9 41 41 H 1.08999 * 113.57483 * 89.91371 * 12 11 10 42 42 H 0.97000 * 119.99646 * 25.00298 * 13 12 11 43 43 H 0.97002 * 119.99999 * 179.97438 * 17 16 14 44 44 H 1.08998 * 113.65700 * 323.84770 * 22 10 9 45 45 H 1.08999 * 113.66069 * 94.81063 * 22 10 9 46 46 H 1.09005 * 113.66022 * 89.57540 * 23 10 9 47 47 H 1.09001 * 113.66746 * 220.62682 * 23 10 9 48 48 H 1.08000 * 125.89722 * 359.95163 * 25 24 2 49 49 H 1.09000 * 109.47202 * 89.97420 * 28 27 26 50 50 H 1.09004 * 109.47048 * 209.97642 * 28 27 26 51 51 H 1.08997 * 109.47143 * 329.97435 * 28 27 26 52 52 H 1.08000 * 126.13433 * 180.24126 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0109 1.0870 -2.3633 7 7 1.9844 -0.3919 -3.7002 8 6 1.5973 0.3650 -4.8933 9 6 2.5153 0.1178 -6.1041 10 6 1.5714 -1.0258 -6.4773 11 6 1.3717 -1.4427 -7.9349 12 6 1.0931 -2.8604 -7.4035 13 7 1.6962 -3.9199 -8.2158 14 6 1.1569 -5.1785 -8.2094 15 1 0.2872 -5.3903 -7.6053 16 6 1.7281 -6.1822 -8.9796 17 7 1.2101 -7.3922 -8.9731 18 14 3.2329 -5.8162 -10.0241 19 1 4.4611 -6.0697 -9.2288 20 1 3.2292 -6.6934 -11.2223 21 1 3.2047 -4.3943 -10.4516 22 6 1.9285 -2.4796 -6.1653 23 6 0.4701 -0.2990 -5.7048 24 6 2.0323 -0.7104 1.2304 25 6 1.7739 -2.0410 1.5756 26 7 2.3784 -2.2942 2.7080 27 7 3.0419 -1.1312 3.1195 28 6 3.8422 -0.9807 4.3374 29 6 2.8188 -0.1757 2.1931 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6054 -1.7198 -1.2952 34 1 3.1263 -0.7994 -1.2056 35 1 2.4883 -1.2158 -3.7908 36 1 1.4225 1.4209 -4.6870 37 1 3.5177 -0.2132 -5.8328 38 1 2.5196 0.9347 -6.8258 39 1 0.5085 -0.9757 -8.4091 40 1 2.2768 -1.3716 -8.5381 41 1 0.0420 -3.0437 -7.1806 42 1 2.4776 -3.7298 -8.7581 43 1 1.6090 -8.0935 -9.5116 44 1 2.9904 -2.7014 -6.2708 45 1 1.5114 -2.8403 -5.2251 46 1 -0.1018 0.4016 -6.3135 47 1 -0.1615 -0.9628 -5.1145 48 1 1.1781 -2.7387 1.0059 49 1 4.8793 -1.2403 4.1251 50 1 3.7893 0.0522 4.6816 51 1 3.4533 -1.6420 5.1117 52 1 3.1974 0.8354 2.2172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121462664.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:14 Heat of formation + Delta-G solvation = 92.343714 kcal Electronic energy + Delta-G solvation = -29762.787098 eV Core-core repulsion = 25765.663304 eV Total energy + Delta-G solvation = -3997.123794 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.56313 -40.74303 -39.29575 -36.15346 -35.33035 -33.55110 -33.06136 -32.22428 -30.28397 -29.91310 -27.97410 -26.83783 -25.80997 -25.31673 -24.28785 -23.17234 -22.03522 -21.41245 -20.71958 -19.98239 -19.68779 -18.03472 -17.43608 -17.30230 -16.77881 -16.09056 -15.76766 -15.55960 -15.19094 -14.91611 -14.71902 -14.57058 -14.15540 -14.00752 -13.69588 -13.45308 -13.30876 -13.07213 -12.90261 -12.76452 -12.74646 -12.62524 -12.44591 -12.16806 -11.79248 -11.69689 -11.49098 -11.35234 -11.21891 -11.18424 -10.96581 -10.83335 -10.64572 -10.22717 -9.99859 -9.91814 -9.73235 -9.71897 -9.70105 -9.44669 -9.02061 -8.88391 -8.65524 -7.27207 -5.78997 -3.14324 1.58455 2.20830 2.50108 2.57428 3.11481 3.35514 3.38238 3.43642 4.15139 4.48748 4.52121 4.56837 4.60064 4.60935 4.68182 4.72392 4.74042 4.85178 4.90170 4.95781 4.97937 5.15795 5.22516 5.35563 5.39779 5.39932 5.47624 5.52953 5.60998 5.63432 5.73079 5.74729 5.76274 5.82842 5.87458 5.96235 6.01942 6.10782 6.15109 6.16267 6.22648 6.26252 6.27922 6.40235 6.46231 6.59806 6.67951 6.81008 6.99220 7.40421 7.46907 7.98099 8.18312 8.40965 9.18957 9.91669 10.11781 11.39269 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012111 B = 0.002024 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.433344 B =13830.192083 C =15326.050131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.008 3.992 3 H 0.080 0.920 4 C -0.135 4.135 5 C 0.516 3.484 6 O -0.541 6.541 7 N -0.710 5.710 8 C 0.123 3.877 9 C -0.134 4.134 10 C -0.104 4.104 11 C -0.142 4.142 12 C 0.175 3.825 13 N -0.737 5.737 14 C -0.247 4.247 15 H 0.091 0.909 16 C 0.004 3.996 17 N -0.933 5.933 18 Si 0.885 3.115 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.143 4.143 23 C -0.126 4.126 24 C -0.228 4.228 25 C 0.056 3.944 26 N -0.298 5.298 27 N -0.380 5.380 28 C 0.102 3.898 29 C 0.055 3.945 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.403 0.597 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.362 0.638 43 H 0.259 0.741 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.182 0.818 49 H 0.074 0.926 50 H 0.086 0.914 51 H 0.088 0.912 52 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.032 19.814 22.499 30.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.012 4.012 3 H 0.099 0.901 4 C -0.175 4.175 5 C 0.303 3.697 6 O -0.419 6.419 7 N -0.361 5.361 8 C 0.017 3.983 9 C -0.172 4.172 10 C -0.105 4.105 11 C -0.181 4.181 12 C 0.064 3.936 13 N -0.377 5.377 14 C -0.377 4.377 15 H 0.108 0.892 16 C -0.192 4.192 17 N -0.581 5.581 18 Si 0.715 3.285 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.184 4.184 23 C -0.164 4.164 24 C -0.240 4.240 25 C -0.130 4.130 26 N -0.119 5.119 27 N -0.162 5.162 28 C -0.039 4.039 29 C -0.091 4.091 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.238 0.762 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.195 0.805 43 H 0.069 0.931 44 H 0.096 0.904 45 H 0.077 0.923 46 H 0.107 0.893 47 H 0.090 0.910 48 H 0.199 0.801 49 H 0.092 0.908 50 H 0.104 0.896 51 H 0.107 0.893 52 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 4.765 19.442 23.655 30.989 hybrid contribution 1.335 0.231 -1.470 2.000 sum 6.100 19.674 22.185 30.273 Atomic orbital electron populations 1.21935 0.94085 1.01679 1.02811 1.19096 0.96048 0.97968 0.88095 0.90113 1.21767 1.02997 1.00466 0.92233 1.20715 0.78804 0.85578 0.84578 1.90653 1.39804 1.24771 1.86661 1.45771 1.57510 1.27597 1.05226 1.21818 0.96168 0.96260 0.84027 1.23154 0.98124 0.99169 0.96711 1.22343 0.96468 0.94343 0.97337 1.23302 1.01259 0.98831 0.94728 1.21525 0.96092 0.86050 0.89932 1.42769 1.33995 1.07982 1.52942 1.19143 1.10751 0.84771 1.22990 0.89165 1.24704 0.98983 0.95552 0.99981 1.69706 1.42408 1.01499 1.44448 0.86548 0.84040 0.77315 0.80608 1.21108 1.21740 1.20334 1.23602 1.01552 0.92111 1.01150 1.23120 0.96145 0.99283 0.97873 1.20090 1.07814 0.95384 1.00693 1.23787 0.99056 0.96115 0.94054 1.77384 1.13376 1.05864 1.15278 1.48455 1.40274 1.08491 1.19000 1.21839 0.94599 1.03486 0.84002 1.22344 1.00213 0.95726 0.90804 0.90462 0.93167 0.93094 0.88631 0.88975 0.76178 0.88412 0.91155 0.89062 0.91916 0.90559 0.90023 0.80524 0.93054 0.90353 0.92286 0.89281 0.90955 0.80102 0.90794 0.89558 0.89341 0.81072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.82 37.16 0.33 -1.05 16 2 C 0.01 0.07 2.40 -91.77 -0.22 -0.15 16 3 H 0.08 0.72 7.92 -51.93 -0.41 0.31 16 4 C -0.13 -1.10 5.03 -27.88 -0.14 -1.24 16 5 C 0.52 5.51 7.55 -10.98 -0.08 5.43 16 6 O -0.54 -7.39 13.57 5.56 0.08 -7.32 16 7 N -0.71 -7.16 5.26 -52.85 -0.28 -7.44 16 8 C 0.12 1.32 4.32 -66.95 -0.29 1.03 16 9 C -0.13 -1.40 7.59 -26.28 -0.20 -1.60 16 10 C -0.10 -1.30 1.03 -154.71 -0.16 -1.46 16 11 C -0.14 -2.12 7.59 -26.28 -0.20 -2.31 16 12 C 0.18 3.22 4.49 -66.84 -0.30 2.92 16 13 N -0.74 -17.03 5.21 -52.37 -0.27 -17.31 16 14 C -0.25 -6.86 10.45 -15.06 -0.16 -7.02 16 15 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 16 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 17 N -0.93 -29.13 13.97 55.49 0.78 -28.35 16 18 Si 0.88 21.89 27.74 -169.99 -4.71 17.17 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 22 C -0.14 -2.16 6.98 -26.18 -0.18 -2.34 16 23 C -0.13 -1.45 7.64 -26.28 -0.20 -1.66 16 24 C -0.23 -1.96 4.80 -105.05 -0.50 -2.46 16 25 C 0.06 0.53 11.54 -17.36 -0.20 0.33 16 26 N -0.30 -3.24 12.58 30.62 0.39 -2.85 16 27 N -0.38 -3.17 4.01 -68.16 -0.27 -3.45 16 28 C 0.10 0.43 11.47 59.85 0.69 1.12 16 29 C 0.05 0.42 11.38 -17.22 -0.20 0.22 16 30 H 0.08 0.87 5.95 -51.93 -0.31 0.56 16 31 H 0.05 0.44 8.02 -51.93 -0.42 0.02 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.40 3.65 8.01 -40.82 -0.33 3.32 16 36 H 0.10 1.13 7.47 -51.93 -0.39 0.74 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.15 8.12 -51.93 -0.42 0.73 16 41 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 42 H 0.36 8.23 5.78 -40.82 -0.24 7.99 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 44 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 46 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.18 1.39 8.06 -52.49 -0.42 0.96 16 49 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 50 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 51 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 52 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 419.26 15.07 6.32 6.32 Total: -1.00 -34.79 419.26 -8.96 -43.75 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -8.86 Total: 9.70 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -2.11 Total: -10.23 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.34 Total: -59.39 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: 0.08 Total: -7.32 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.17 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.79 -8.96 -43.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121462664.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.096 kcal (2) G-P(sol) polarization free energy of solvation -34.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds