Wall clock time and date at job start Wed Apr 1 2020 05:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47031 * 2 1 4 4 C 1.53004 * 109.47142 * 239.99906 * 2 1 3 5 5 C 1.50703 * 109.46830 * 65.00038 * 4 2 1 6 6 O 1.21282 * 120.00325 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99822 * 180.02562 * 5 4 2 8 8 C 1.46497 * 119.99961 * 180.02562 * 7 5 4 9 9 C 1.53948 * 113.58037 * 155.00042 * 8 7 5 10 10 C 1.52908 * 86.78752 * 89.86710 * 9 8 7 11 11 C 1.52906 * 121.14082 * 150.61758 * 10 9 8 12 12 C 1.53954 * 86.88484 * 150.57014 * 11 10 9 13 13 N 1.46495 * 113.58384 * 220.70894 * 12 11 10 14 14 C 1.36932 * 119.99974 * 205.00190 * 13 12 11 15 15 H 1.07996 * 120.00485 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99871 * 179.97438 * 14 13 12 17 17 N 1.31623 * 120.00287 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00039 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47219 * 89.99713 * 18 16 14 20 20 H 1.48500 * 109.47302 * 209.99866 * 18 16 14 21 21 H 1.48503 * 109.47012 * 329.99603 * 18 16 14 22 22 C 1.52914 * 121.13550 * 259.18373 * 10 9 8 23 23 C 1.52907 * 88.04047 * 24.89729 * 10 9 8 24 24 C 1.50696 * 109.47120 * 120.00248 * 2 1 3 25 25 C 1.39867 * 126.04294 * 60.02603 * 24 2 1 26 26 N 1.30839 * 108.20108 * 179.97438 * 25 24 2 27 27 N 1.40078 * 108.20606 * 359.97438 * 26 25 24 28 28 C 1.46503 * 126.03495 * 180.02562 * 27 26 25 29 29 C 1.34942 * 107.93000 * 359.76064 * 27 26 25 30 30 H 1.09007 * 109.47052 * 60.00142 * 1 2 3 31 31 H 1.09000 * 109.47031 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47291 * 300.00105 * 1 2 3 33 33 H 1.08996 * 109.47416 * 305.00431 * 4 2 1 34 34 H 1.09000 * 109.47051 * 184.99428 * 4 2 1 35 35 H 0.97001 * 119.99900 * 359.97438 * 7 5 4 36 36 H 1.08999 * 112.87810 * 23.85307 * 8 7 5 37 37 H 1.08994 * 113.66498 * 335.39202 * 9 8 7 38 38 H 1.09005 * 113.74881 * 204.35142 * 9 8 7 39 39 H 1.09002 * 113.66405 * 265.09178 * 11 10 9 40 40 H 1.08998 * 113.66160 * 36.05328 * 11 10 9 41 41 H 1.08999 * 113.57483 * 89.91371 * 12 11 10 42 42 H 0.97000 * 119.99646 * 25.00298 * 13 12 11 43 43 H 0.97002 * 119.99999 * 179.97438 * 17 16 14 44 44 H 1.08998 * 113.65700 * 323.84770 * 22 10 9 45 45 H 1.08999 * 113.66069 * 94.81063 * 22 10 9 46 46 H 1.09005 * 113.66022 * 89.57540 * 23 10 9 47 47 H 1.09001 * 113.66746 * 220.62682 * 23 10 9 48 48 H 1.08000 * 125.89722 * 359.95163 * 25 24 2 49 49 H 1.09000 * 109.47202 * 89.97420 * 28 27 26 50 50 H 1.09004 * 109.47048 * 209.97642 * 28 27 26 51 51 H 1.08997 * 109.47143 * 329.97435 * 28 27 26 52 52 H 1.08000 * 126.13433 * 180.24126 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0109 1.0870 -2.3633 7 7 1.9844 -0.3919 -3.7002 8 6 1.5973 0.3650 -4.8933 9 6 2.5153 0.1178 -6.1041 10 6 1.5714 -1.0258 -6.4773 11 6 1.3717 -1.4427 -7.9349 12 6 1.0931 -2.8604 -7.4035 13 7 1.6962 -3.9199 -8.2158 14 6 1.1569 -5.1785 -8.2094 15 1 0.2872 -5.3903 -7.6053 16 6 1.7281 -6.1822 -8.9796 17 7 1.2101 -7.3922 -8.9731 18 14 3.2329 -5.8162 -10.0241 19 1 4.4611 -6.0697 -9.2288 20 1 3.2292 -6.6934 -11.2223 21 1 3.2047 -4.3943 -10.4516 22 6 1.9285 -2.4796 -6.1653 23 6 0.4701 -0.2990 -5.7048 24 6 2.0323 -0.7104 1.2304 25 6 1.7739 -2.0410 1.5756 26 7 2.3784 -2.2942 2.7080 27 7 3.0419 -1.1312 3.1195 28 6 3.8422 -0.9807 4.3374 29 6 2.8188 -0.1757 2.1931 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6054 -1.7198 -1.2952 34 1 3.1263 -0.7994 -1.2056 35 1 2.4883 -1.2158 -3.7908 36 1 1.4225 1.4209 -4.6870 37 1 3.5177 -0.2132 -5.8328 38 1 2.5196 0.9347 -6.8258 39 1 0.5085 -0.9757 -8.4091 40 1 2.2768 -1.3716 -8.5381 41 1 0.0420 -3.0437 -7.1806 42 1 2.4776 -3.7298 -8.7581 43 1 1.6090 -8.0935 -9.5116 44 1 2.9904 -2.7014 -6.2708 45 1 1.5114 -2.8403 -5.2251 46 1 -0.1018 0.4016 -6.3135 47 1 -0.1615 -0.9628 -5.1145 48 1 1.1781 -2.7387 1.0059 49 1 4.8793 -1.2403 4.1251 50 1 3.7893 0.0522 4.6816 51 1 3.4533 -1.6420 5.1117 52 1 3.1974 0.8354 2.2172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121462664.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:11 Heat of formation + Delta-G solvation = 69.958077 kcal Electronic energy + Delta-G solvation = -29763.757812 eV Core-core repulsion = 25765.663304 eV Total energy + Delta-G solvation = -3998.094508 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.18406 -41.73834 -40.24823 -37.38060 -36.12983 -35.10358 -33.68715 -33.53026 -32.05507 -30.56792 -28.71883 -27.33873 -26.71335 -26.55055 -25.98749 -24.13745 -23.17351 -22.07372 -21.63200 -21.21117 -20.36388 -19.70313 -18.74208 -18.14562 -17.39057 -16.97847 -16.89106 -16.35780 -16.26941 -16.08890 -15.79283 -15.45065 -15.27237 -15.08062 -14.66452 -14.58113 -14.32751 -14.01609 -13.79208 -13.64430 -13.63957 -13.47390 -13.31239 -13.20228 -13.10807 -12.91525 -12.86503 -12.44046 -12.30943 -12.24750 -12.04217 -11.96845 -11.88702 -11.82687 -11.31538 -11.17129 -11.02885 -10.87089 -10.67095 -10.62313 -10.34014 -9.89029 -9.26696 -9.24425 -8.01167 -5.33705 0.99428 1.38392 1.42161 1.49617 1.72600 1.75472 1.84670 2.33188 2.49572 3.28983 3.50153 3.57806 3.64642 3.73029 3.82288 3.86931 3.96458 4.02172 4.12736 4.15794 4.27916 4.31821 4.36843 4.45605 4.49829 4.62524 4.69239 4.70985 4.72895 4.79356 4.82114 4.88623 4.89055 4.92032 4.98116 5.01987 5.03206 5.09788 5.13889 5.18126 5.25928 5.28667 5.45921 5.49451 5.53068 5.64496 5.74293 5.78705 5.82291 6.18511 6.24495 6.66635 6.77819 7.09767 7.37184 7.87808 8.06948 9.20516 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012111 B = 0.002024 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.433344 B =13830.192083 C =15326.050131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.017 3.983 3 H 0.078 0.922 4 C -0.129 4.129 5 C 0.515 3.485 6 O -0.573 6.573 7 N -0.707 5.707 8 C 0.126 3.874 9 C -0.118 4.118 10 C -0.091 4.091 11 C -0.130 4.130 12 C 0.147 3.853 13 N -0.742 5.742 14 C -0.231 4.231 15 H 0.054 0.946 16 C -0.069 4.069 17 N -0.986 5.986 18 Si 0.958 3.042 19 H -0.277 1.277 20 H -0.298 1.298 21 H -0.251 1.251 22 C -0.132 4.132 23 C -0.126 4.126 24 C -0.240 4.240 25 C 0.046 3.954 26 N -0.340 5.340 27 N -0.383 5.383 28 C 0.093 3.907 29 C 0.060 3.940 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.409 0.591 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.366 0.634 43 H 0.257 0.743 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.101 0.899 47 H 0.058 0.942 48 H 0.189 0.811 49 H 0.084 0.916 50 H 0.114 0.886 51 H 0.086 0.914 52 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.345 22.582 22.889 32.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.003 4.003 3 H 0.096 0.904 4 C -0.169 4.169 5 C 0.304 3.696 6 O -0.452 6.452 7 N -0.358 5.358 8 C 0.020 3.980 9 C -0.156 4.156 10 C -0.092 4.092 11 C -0.169 4.169 12 C 0.038 3.962 13 N -0.383 5.383 14 C -0.362 4.362 15 H 0.072 0.928 16 C -0.260 4.260 17 N -0.636 5.636 18 Si 0.785 3.215 19 H -0.203 1.203 20 H -0.225 1.225 21 H -0.175 1.175 22 C -0.173 4.173 23 C -0.165 4.165 24 C -0.252 4.252 25 C -0.139 4.139 26 N -0.162 5.162 27 N -0.165 5.165 28 C -0.047 4.047 29 C -0.086 4.086 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.246 0.754 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.127 0.873 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.200 0.800 43 H 0.066 0.934 44 H 0.098 0.902 45 H 0.078 0.922 46 H 0.119 0.881 47 H 0.077 0.923 48 H 0.206 0.794 49 H 0.102 0.898 50 H 0.133 0.867 51 H 0.105 0.895 52 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 7.088 22.264 24.080 33.553 hybrid contribution 0.503 -0.591 -1.476 1.668 sum 7.590 21.673 22.604 32.222 Atomic orbital electron populations 1.21870 0.95011 1.01476 1.01727 1.18964 0.95163 0.97825 0.88341 0.90397 1.21769 1.03956 1.00286 0.90839 1.21110 0.78061 0.85216 0.85230 1.90646 1.41233 1.26262 1.87092 1.45779 1.57249 1.27709 1.05044 1.21759 0.95872 0.96047 0.84338 1.23123 0.97870 0.98225 0.96400 1.22167 0.97990 0.93658 0.95358 1.23199 1.01807 0.95618 0.96288 1.21915 0.95613 0.86807 0.91831 1.42747 1.34308 1.07200 1.54050 1.19100 1.09138 0.86856 1.21148 0.92817 1.25561 1.02900 0.95317 1.02227 1.69899 1.44693 1.02827 1.46228 0.85363 0.79669 0.78275 0.78175 1.20347 1.22542 1.17507 1.23394 1.00778 0.93870 0.99229 1.23182 0.96154 0.99215 0.97930 1.20096 1.08780 0.95130 1.01175 1.24010 0.99056 0.96849 0.93978 1.77315 1.14904 1.07734 1.16218 1.48790 1.39950 1.07887 1.19911 1.22159 0.94522 1.05328 0.82678 1.22862 0.99123 0.96685 0.89951 0.92458 0.92939 0.93122 0.87813 0.87412 0.75449 0.88744 0.90238 0.87282 0.91136 0.89952 0.91912 0.80001 0.93445 0.90215 0.92191 0.88076 0.92295 0.79421 0.89787 0.86715 0.89522 0.78001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.82 71.98 0.64 -1.99 16 2 C 0.02 0.27 2.40 -11.54 -0.03 0.24 16 3 H 0.08 1.29 7.92 -2.39 -0.02 1.27 16 4 C -0.13 -1.90 5.03 29.85 0.15 -1.75 16 5 C 0.52 10.28 7.55 87.66 0.66 10.94 16 6 O -0.57 -15.15 13.57 -3.04 -0.04 -15.19 16 7 N -0.71 -12.84 5.26 -439.51 -2.31 -15.15 16 8 C 0.13 2.40 4.32 45.63 0.20 2.60 16 9 C -0.12 -2.05 7.59 30.88 0.23 -1.81 16 10 C -0.09 -2.05 1.03 -52.31 -0.05 -2.10 16 11 C -0.13 -3.56 7.59 30.88 0.23 -3.33 16 12 C 0.15 5.32 4.49 45.70 0.21 5.52 16 13 N -0.74 -33.83 5.21 -319.61 -1.66 -35.49 16 14 C -0.23 -13.14 10.45 84.03 0.88 -12.26 16 15 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 16 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 17 N -0.99 -63.48 13.97 21.65 0.30 -63.17 16 18 Si 0.96 45.17 27.74 68.60 1.90 47.07 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 21 H -0.25 -10.57 6.52 99.48 0.65 -9.92 16 22 C -0.13 -3.77 6.98 30.95 0.22 -3.55 16 23 C -0.13 -2.67 7.64 30.89 0.24 -2.44 16 24 C -0.24 -3.81 4.80 -20.14 -0.10 -3.91 16 25 C 0.05 0.86 11.54 85.24 0.98 1.84 16 26 N -0.34 -7.23 12.58 -57.02 -0.72 -7.95 16 27 N -0.38 -5.83 4.01 -369.55 -1.48 -7.31 16 28 C 0.09 0.61 11.47 127.77 1.47 2.08 16 29 C 0.06 0.79 11.38 83.54 0.95 1.74 16 30 H 0.06 1.29 5.95 -2.38 -0.01 1.28 16 31 H 0.05 0.90 8.02 -2.39 -0.02 0.89 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.41 6.46 8.01 -92.71 -0.74 5.72 16 36 H 0.09 1.96 7.47 -2.39 -0.02 1.94 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.08 2.20 8.12 -2.39 -0.02 2.18 16 41 H 0.06 2.47 8.10 -2.39 -0.02 2.45 16 42 H 0.37 15.92 5.78 -92.71 -0.54 15.38 16 43 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 44 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.06 1.68 8.08 -2.39 -0.02 1.66 16 46 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 47 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.19 2.87 8.06 -2.91 -0.02 2.85 16 49 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 50 H 0.11 0.08 8.14 -2.38 -0.02 0.06 16 51 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 52 H 0.20 1.19 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -77.59 419.26 2.91 -74.68 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: -0.42 Total: 34.30 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 7.34 Total: -11.78 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -5.87 Total: -129.08 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.04 Total: -15.19 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.90 Total: 47.07 kcal Total: -77.59 2.91 -74.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121462664.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.638 kcal (2) G-P(sol) polarization free energy of solvation -77.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds