Wall clock time and date at job start Wed Apr 1 2020 04:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00149 * 2 1 4 4 N 1.46500 * 109.47050 * 124.99571 * 3 2 1 5 5 C 1.36737 * 127.13394 * 90.00496 * 4 3 2 6 6 C 1.50699 * 126.34867 * 0.02562 * 5 4 3 7 7 H 1.09010 * 109.47212 * 359.70817 * 6 5 4 8 8 C 1.53002 * 109.47055 * 239.71599 * 6 5 4 9 9 C 1.52997 * 109.47340 * 119.71070 * 6 5 4 10 10 C 1.50705 * 109.46986 * 184.99845 * 9 6 5 11 11 H 1.07990 * 120.00080 * 0.02562 * 10 9 6 12 12 C 1.37884 * 119.99593 * 180.02562 * 10 9 6 13 13 N 1.31510 * 120.00214 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99745 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47015 * 179.97438 * 14 12 10 16 16 H 1.48503 * 109.46861 * 299.99963 * 14 12 10 17 17 H 1.48504 * 109.47145 * 59.99696 * 14 12 10 18 18 N 1.30291 * 107.30759 * 179.75339 * 5 4 3 19 19 N 1.28528 * 110.05079 * 0.24309 * 18 5 4 20 20 C 1.31214 * 109.86243 * 359.97438 * 19 18 5 21 21 N 1.38579 * 126.47497 * 180.02562 * 20 19 18 22 22 C 1.50162 * 110.99898 * 119.58565 * 21 20 19 23 23 C 1.51281 * 102.31040 * 212.48185 * 22 21 20 24 24 H 1.08998 * 111.74174 * 288.55888 * 23 22 21 25 25 C 1.51472 * 123.41292 * 149.65786 * 23 22 21 26 26 O 1.46049 * 101.79815 * 209.03444 * 25 23 22 27 27 C 1.45714 * 108.93352 * 26.91709 * 26 25 23 28 28 C 1.49326 * 104.89873 * 6.62725 * 27 26 25 29 29 C 1.53002 * 108.57629 * 76.42578 * 28 27 26 30 30 C 1.49300 * 129.84113 * 212.32844 * 28 27 26 31 31 H 1.08002 * 120.00174 * 359.97438 * 1 2 3 32 32 H 1.08004 * 120.00074 * 179.97438 * 1 2 3 33 33 H 1.08002 * 120.00174 * 180.02562 * 2 1 3 34 34 H 1.09006 * 109.47021 * 5.00213 * 3 2 1 35 35 H 1.08991 * 109.47683 * 244.99884 * 3 2 1 36 36 H 1.08999 * 109.47364 * 179.97438 * 8 6 5 37 37 H 1.09001 * 109.47051 * 299.99529 * 8 6 5 38 38 H 1.08996 * 109.47407 * 59.99488 * 8 6 5 39 39 H 1.08999 * 109.47205 * 65.00321 * 9 6 5 40 40 H 1.08990 * 109.47127 * 305.00237 * 9 6 5 41 41 H 0.96999 * 120.00088 * 0.02562 * 13 12 10 42 42 H 1.08996 * 110.83563 * 330.67930 * 22 21 20 43 43 H 1.09001 * 110.83919 * 94.27532 * 22 21 20 44 44 H 1.09000 * 110.42040 * 91.37559 * 25 23 22 45 45 H 1.08997 * 112.12139 * 327.44484 * 25 23 22 46 46 H 1.08998 * 110.35919 * 247.76470 * 27 26 25 47 47 H 1.09007 * 110.44693 * 125.52577 * 27 26 25 48 48 H 1.08994 * 109.47043 * 199.08471 * 29 28 27 49 49 H 1.09003 * 109.47192 * 319.08163 * 29 28 27 50 50 H 1.08993 * 109.47123 * 79.07929 * 29 28 27 51 51 H 1.08995 * 110.42469 * 28.08397 * 30 28 27 52 52 H 1.09001 * 110.53145 * 265.65386 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.2912 0.9006 1.1438 6 6 5.0443 0.3015 -0.0159 7 1 4.3915 0.2542 -0.8876 8 6 5.5077 -1.1097 0.3513 9 6 6.2618 1.1708 -0.3370 10 6 6.9452 0.6416 -1.5716 11 1 6.5504 -0.2274 -2.0768 12 6 8.0745 1.2671 -2.0560 13 7 8.5549 2.3256 -1.4411 14 14 8.9212 0.6117 -3.5867 15 1 10.1029 1.4553 -3.8983 16 1 9.3597 -0.7871 -3.3492 17 1 7.9737 0.6461 -4.7297 18 7 4.7575 1.1088 2.3424 19 7 3.8484 1.6337 3.0840 20 6 2.7443 1.7902 2.3923 21 7 1.5519 2.3247 2.8537 22 6 1.1734 3.5499 2.0724 23 6 0.4652 4.3897 3.1124 24 1 -0.5084 3.9742 3.3722 25 6 0.4602 5.9043 3.0992 26 8 0.3364 6.2150 4.5209 27 6 0.9003 5.1172 5.2956 28 6 1.5167 4.2094 4.2827 29 6 2.8359 4.8266 3.8138 30 6 1.6639 2.7238 4.2935 31 1 -0.5400 0.9353 0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3585 2.1317 0.0896 35 1 2.6213 1.4027 -0.9313 36 1 6.0521 -1.5432 -0.4877 37 1 6.1605 -1.0624 1.2229 38 1 4.6404 -1.7289 0.5801 39 1 6.9572 1.1462 0.5019 40 1 5.9394 2.1971 -0.5118 41 1 8.1150 2.6662 -0.6464 42 1 2.0607 4.0615 1.6996 43 1 0.4990 3.2953 1.2547 44 1 -0.4017 6.2770 2.5458 45 1 1.3850 6.3143 2.6933 46 1 0.1147 4.5966 5.8430 47 1 1.6596 5.4878 5.9843 48 1 3.1277 4.3811 2.8628 49 1 2.7095 5.9019 3.6878 50 1 3.6103 4.6364 4.5569 51 1 0.8656 2.2667 4.8782 52 1 2.6375 2.4390 4.6926 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121501784.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:59 Heat of formation + Delta-G solvation = 95.142391 kcal Electronic energy + Delta-G solvation = -32250.403774 eV Core-core repulsion = 28253.401340 eV Total energy + Delta-G solvation = -3997.002434 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.95060 -41.73108 -37.52828 -36.28285 -35.38054 -33.07565 -32.72317 -32.00086 -31.34183 -28.67770 -27.35782 -27.24330 -26.90721 -26.63399 -24.86710 -23.96733 -22.19737 -21.22176 -20.76295 -20.31187 -19.74263 -19.08187 -17.43231 -17.04883 -16.80230 -16.45012 -16.14012 -15.77788 -15.57733 -15.12674 -14.75689 -14.60546 -14.11100 -13.98894 -13.72640 -13.49785 -13.42147 -12.97317 -12.78652 -12.68772 -12.47675 -12.31410 -12.21653 -11.91383 -11.85111 -11.67341 -11.54671 -11.39823 -11.19956 -10.99921 -10.87511 -10.77548 -10.50745 -10.46692 -10.26596 -10.13931 -10.03272 -9.94563 -9.77507 -9.74050 -9.52296 -8.62722 -8.35158 -8.03532 -6.37480 -4.07995 1.75123 1.96050 2.53947 3.09643 3.25203 3.37784 3.41699 3.43867 3.61441 3.62450 4.15350 4.38074 4.45900 4.51445 4.56479 4.65819 4.67517 4.75071 4.78059 4.87182 4.94359 5.04986 5.07727 5.18820 5.21574 5.26170 5.34493 5.39007 5.40166 5.43457 5.47859 5.56334 5.57920 5.63813 5.67210 5.74919 5.92782 6.00312 6.03288 6.05830 6.14397 6.26243 6.27129 6.33256 6.41935 6.59693 6.67533 6.73812 6.94301 7.27736 7.29684 7.50028 8.13001 8.42391 8.84230 9.11317 9.64451 11.02695 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013574 B = 0.002984 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.300818 B = 9381.035032 C =10229.656846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.171 4.171 3 C 0.135 3.865 4 N -0.477 5.477 5 C 0.213 3.787 6 C 0.006 3.994 7 H 0.073 0.927 8 C -0.124 4.124 9 C 0.026 3.974 10 C -0.601 4.601 11 H 0.052 0.948 12 C 0.017 3.983 13 N -0.910 5.910 14 Si 1.067 2.933 15 H -0.283 1.283 16 H -0.287 1.287 17 H -0.289 1.289 18 N -0.283 5.283 19 N -0.321 5.321 20 C 0.331 3.669 21 N -0.434 5.434 22 C 0.051 3.949 23 C -0.146 4.146 24 H 0.107 0.893 25 C 0.066 3.934 26 O -0.386 6.386 27 C 0.085 3.915 28 C -0.137 4.137 29 C -0.158 4.158 30 C 0.080 3.920 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.032 0.968 39 H 0.023 0.977 40 H 0.002 0.998 41 H 0.270 0.730 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.061 0.939 49 H 0.066 0.934 50 H 0.069 0.931 51 H 0.091 0.909 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.494 2.326 7.475 22.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.190 4.190 3 C 0.012 3.988 4 N -0.172 5.172 5 C -0.055 4.055 6 C -0.015 4.015 7 H 0.091 0.909 8 C -0.182 4.182 9 C -0.011 4.011 10 C -0.640 4.640 11 H 0.070 0.930 12 C -0.187 4.187 13 N -0.545 5.545 14 Si 0.896 3.104 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.215 1.215 18 N -0.121 5.121 19 N -0.165 5.165 20 C -0.025 4.025 21 N -0.158 5.158 22 C -0.075 4.075 23 C -0.165 4.165 24 H 0.125 0.875 25 C -0.010 4.010 26 O -0.306 6.306 27 C 0.008 3.992 28 C -0.138 4.138 29 C -0.215 4.215 30 C -0.046 4.046 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.134 0.866 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.041 0.959 40 H 0.021 0.979 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.101 0.899 48 H 0.080 0.920 49 H 0.084 0.916 50 H 0.088 0.912 51 H 0.109 0.891 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -19.710 2.417 7.650 21.280 hybrid contribution -1.737 -0.038 -0.140 1.743 sum -21.446 2.378 7.511 22.847 Atomic orbital electron populations 1.23840 0.95373 1.02240 0.98420 1.23062 0.96291 0.98049 1.01583 1.21007 0.91855 0.97333 0.88596 1.46243 1.12244 1.48629 1.10049 1.25591 0.81143 1.00521 0.98217 1.19820 0.96723 0.96261 0.88701 0.90907 1.21659 0.99899 0.93864 1.02821 1.19212 0.90936 0.93421 0.97579 1.21948 1.14029 1.16026 1.11961 0.92973 1.25812 0.95278 0.94957 1.02699 1.70759 1.41620 1.22297 1.19854 0.83567 0.76297 0.75675 0.74899 1.20794 1.21340 1.21518 1.74003 1.21814 1.16062 1.00173 1.74450 0.95969 1.20078 1.26001 1.22571 0.92824 1.03384 0.83758 1.62074 1.22618 1.26913 1.04204 1.22699 0.99955 0.88777 0.96044 1.23373 1.00022 0.96358 0.96778 0.87533 1.22791 1.02510 0.92390 0.83323 1.89377 1.82371 1.42434 1.16397 1.21920 0.97439 0.87224 0.92615 1.22093 0.96913 0.97102 0.97714 1.22385 0.95712 1.00916 1.02501 1.21820 1.05222 0.91235 0.86346 0.88338 0.87804 0.86570 0.88730 0.87491 0.90561 0.92146 0.94867 0.95903 0.97928 0.91961 0.91029 0.89029 0.89200 0.90620 0.90893 0.89927 0.92016 0.91558 0.91181 0.89057 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 14.32 29.02 0.42 -0.97 16 2 C -0.17 -1.86 9.85 -36.02 -0.35 -2.21 16 3 C 0.13 1.62 6.22 -5.19 -0.03 1.59 16 4 N -0.48 -7.57 2.79 -115.37 -0.32 -7.89 16 5 C 0.21 4.13 6.58 -154.02 -1.01 3.11 16 6 C 0.01 0.12 2.70 -91.77 -0.25 -0.12 16 7 H 0.07 1.37 6.95 -51.92 -0.36 1.01 16 8 C -0.12 -2.36 8.98 37.16 0.33 -2.03 16 9 C 0.03 0.67 3.74 -27.88 -0.10 0.56 16 10 C -0.60 -16.32 8.41 -34.44 -0.29 -16.61 16 11 H 0.05 1.36 7.06 -52.49 -0.37 0.99 16 12 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 13 N -0.91 -27.74 13.65 55.43 0.76 -26.98 16 14 Si 1.07 24.69 29.90 -169.99 -5.08 19.61 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 18 N -0.28 -6.04 12.18 32.99 0.40 -5.64 16 19 N -0.32 -6.08 10.51 30.31 0.32 -5.76 16 20 C 0.33 5.23 6.29 -318.88 -2.01 3.22 16 21 N -0.43 -5.23 5.34 -172.46 -0.92 -6.15 16 22 C 0.05 0.50 4.87 -2.86 -0.01 0.48 16 23 C -0.15 -1.21 3.23 -89.30 -0.29 -1.50 16 24 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 25 C 0.07 0.55 7.01 36.38 0.26 0.80 16 26 O -0.39 -3.91 11.47 -35.23 -0.40 -4.31 16 27 C 0.08 0.72 6.92 35.35 0.24 0.97 16 28 C -0.14 -1.28 1.55 -155.18 -0.24 -1.52 16 29 C -0.16 -1.77 7.37 37.16 0.27 -1.50 16 30 C 0.08 0.87 6.02 -4.01 -0.02 0.85 16 31 H 0.10 0.71 7.84 -52.49 -0.41 0.30 16 32 H 0.10 0.78 8.06 -52.48 -0.42 0.36 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.09 0.92 5.16 -51.93 -0.27 0.65 16 35 H 0.11 1.30 7.23 -51.93 -0.38 0.93 16 36 H 0.08 1.48 6.95 -51.93 -0.36 1.11 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.02 0.63 8.01 -51.93 -0.42 0.22 16 40 H 0.00 0.07 8.01 -51.93 -0.42 -0.35 16 41 H 0.27 8.33 7.22 -40.82 -0.29 8.04 16 42 H 0.07 0.81 5.73 -51.93 -0.30 0.52 16 43 H 0.09 0.73 6.71 -51.93 -0.35 0.39 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.64 6.14 -51.93 -0.32 0.32 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.67 7.98 -51.92 -0.41 0.25 16 48 H 0.06 0.83 4.74 -51.93 -0.25 0.58 16 49 H 0.07 0.69 5.79 -51.93 -0.30 0.39 16 50 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 51 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 52 H 0.11 1.39 6.27 -51.93 -0.33 1.06 16 LS Contribution 397.58 15.07 5.99 5.99 Total: -1.00 -32.99 397.58 -10.58 -43.56 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -8.13 Total: 2.07 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -3.19 Total: -14.50 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.23 Total: -52.43 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.40 Total: -4.31 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.08 Total: 19.61 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.99 -10.58 -43.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121501784.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.705 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds