Wall clock time and date at job start Wed Apr 1 2020 04:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00149 * 2 1 4 4 N 1.46500 * 109.47050 * 124.99571 * 3 2 1 5 5 C 1.36737 * 127.13394 * 90.00496 * 4 3 2 6 6 C 1.50699 * 126.34867 * 0.02562 * 5 4 3 7 7 H 1.09010 * 109.47212 * 359.70817 * 6 5 4 8 8 C 1.53002 * 109.47055 * 239.71599 * 6 5 4 9 9 C 1.52997 * 109.47340 * 119.71070 * 6 5 4 10 10 C 1.50705 * 109.46986 * 184.99845 * 9 6 5 11 11 H 1.07990 * 120.00080 * 0.02562 * 10 9 6 12 12 C 1.37884 * 119.99593 * 180.02562 * 10 9 6 13 13 N 1.31510 * 120.00214 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99745 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47015 * 179.97438 * 14 12 10 16 16 H 1.48503 * 109.46861 * 299.99963 * 14 12 10 17 17 H 1.48504 * 109.47145 * 59.99696 * 14 12 10 18 18 N 1.30291 * 107.30759 * 179.75339 * 5 4 3 19 19 N 1.28528 * 110.05079 * 0.24309 * 18 5 4 20 20 C 1.31214 * 109.86243 * 359.97438 * 19 18 5 21 21 N 1.38579 * 126.47497 * 180.02562 * 20 19 18 22 22 C 1.50162 * 110.99898 * 119.58565 * 21 20 19 23 23 C 1.51281 * 102.31040 * 212.48185 * 22 21 20 24 24 H 1.08998 * 111.74174 * 288.55888 * 23 22 21 25 25 C 1.51472 * 123.41292 * 149.65786 * 23 22 21 26 26 O 1.46049 * 101.79815 * 209.03444 * 25 23 22 27 27 C 1.45714 * 108.93352 * 26.91709 * 26 25 23 28 28 C 1.49326 * 104.89873 * 6.62725 * 27 26 25 29 29 C 1.53002 * 108.57629 * 76.42578 * 28 27 26 30 30 C 1.49300 * 129.84113 * 212.32844 * 28 27 26 31 31 H 1.08002 * 120.00174 * 359.97438 * 1 2 3 32 32 H 1.08004 * 120.00074 * 179.97438 * 1 2 3 33 33 H 1.08002 * 120.00174 * 180.02562 * 2 1 3 34 34 H 1.09006 * 109.47021 * 5.00213 * 3 2 1 35 35 H 1.08991 * 109.47683 * 244.99884 * 3 2 1 36 36 H 1.08999 * 109.47364 * 179.97438 * 8 6 5 37 37 H 1.09001 * 109.47051 * 299.99529 * 8 6 5 38 38 H 1.08996 * 109.47407 * 59.99488 * 8 6 5 39 39 H 1.08999 * 109.47205 * 65.00321 * 9 6 5 40 40 H 1.08990 * 109.47127 * 305.00237 * 9 6 5 41 41 H 0.96999 * 120.00088 * 0.02562 * 13 12 10 42 42 H 1.08996 * 110.83563 * 330.67930 * 22 21 20 43 43 H 1.09001 * 110.83919 * 94.27532 * 22 21 20 44 44 H 1.09000 * 110.42040 * 91.37559 * 25 23 22 45 45 H 1.08997 * 112.12139 * 327.44484 * 25 23 22 46 46 H 1.08998 * 110.35919 * 247.76470 * 27 26 25 47 47 H 1.09007 * 110.44693 * 125.52577 * 27 26 25 48 48 H 1.08994 * 109.47043 * 199.08471 * 29 28 27 49 49 H 1.09003 * 109.47192 * 319.08163 * 29 28 27 50 50 H 1.08993 * 109.47123 * 79.07929 * 29 28 27 51 51 H 1.08995 * 110.42469 * 28.08397 * 30 28 27 52 52 H 1.09001 * 110.53145 * 265.65386 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.2912 0.9006 1.1438 6 6 5.0443 0.3015 -0.0159 7 1 4.3915 0.2542 -0.8876 8 6 5.5077 -1.1097 0.3513 9 6 6.2618 1.1708 -0.3370 10 6 6.9452 0.6416 -1.5716 11 1 6.5504 -0.2274 -2.0768 12 6 8.0745 1.2671 -2.0560 13 7 8.5549 2.3256 -1.4411 14 14 8.9212 0.6117 -3.5867 15 1 10.1029 1.4553 -3.8983 16 1 9.3597 -0.7871 -3.3492 17 1 7.9737 0.6461 -4.7297 18 7 4.7575 1.1088 2.3424 19 7 3.8484 1.6337 3.0840 20 6 2.7443 1.7902 2.3923 21 7 1.5519 2.3247 2.8537 22 6 1.1734 3.5499 2.0724 23 6 0.4652 4.3897 3.1124 24 1 -0.5084 3.9742 3.3722 25 6 0.4602 5.9043 3.0992 26 8 0.3364 6.2150 4.5209 27 6 0.9003 5.1172 5.2956 28 6 1.5167 4.2094 4.2827 29 6 2.8359 4.8266 3.8138 30 6 1.6639 2.7238 4.2935 31 1 -0.5400 0.9353 0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3585 2.1317 0.0896 35 1 2.6213 1.4027 -0.9313 36 1 6.0521 -1.5432 -0.4877 37 1 6.1605 -1.0624 1.2229 38 1 4.6404 -1.7289 0.5801 39 1 6.9572 1.1462 0.5019 40 1 5.9394 2.1971 -0.5118 41 1 8.1150 2.6662 -0.6464 42 1 2.0607 4.0615 1.6996 43 1 0.4990 3.2953 1.2547 44 1 -0.4017 6.2770 2.5458 45 1 1.3850 6.3143 2.6933 46 1 0.1147 4.5966 5.8430 47 1 1.6596 5.4878 5.9843 48 1 3.1277 4.3811 2.8628 49 1 2.7095 5.9019 3.6878 50 1 3.6103 4.6364 4.5569 51 1 0.8656 2.2667 4.8782 52 1 2.6375 2.4390 4.6926 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121501784.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:57 Heat of formation + Delta-G solvation = 75.986374 kcal Electronic energy + Delta-G solvation = -32251.234441 eV Core-core repulsion = 28253.401340 eV Total energy + Delta-G solvation = -3997.833101 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -44.22309 -42.61570 -38.43768 -37.49831 -36.97183 -34.53904 -33.98911 -33.27627 -32.13918 -29.99179 -28.61787 -28.28185 -28.03855 -27.84330 -25.93619 -25.66032 -23.94443 -22.19503 -21.70173 -21.37270 -20.74097 -20.22259 -18.87196 -18.47179 -17.88872 -17.53860 -17.21344 -16.70651 -16.49027 -16.30535 -15.90722 -15.59893 -15.52237 -15.17654 -15.10263 -14.83935 -14.47161 -14.23705 -13.84062 -13.72074 -13.64283 -13.52572 -13.23363 -13.18852 -13.13378 -12.89000 -12.69096 -12.62910 -12.50780 -12.38926 -12.25525 -12.07533 -11.97802 -11.84420 -11.69168 -11.45103 -11.29787 -11.14845 -10.88616 -10.66904 -10.63024 -10.55004 -10.53324 -9.35197 -8.66292 -6.37570 0.66350 0.85836 1.51427 1.55070 1.63939 1.72766 1.81988 2.41802 2.51628 2.59607 2.76251 3.18907 3.30084 3.39876 3.49317 3.60758 3.74984 3.80010 3.86109 3.89936 3.96927 4.00190 4.09585 4.20452 4.27286 4.32861 4.34710 4.37716 4.42365 4.46420 4.51500 4.65060 4.67558 4.73583 4.79858 4.82163 4.88776 4.90487 4.92664 4.94854 5.00805 5.04270 5.13484 5.16385 5.21932 5.24655 5.37383 5.49720 5.55002 5.63281 5.65111 5.95532 6.08105 6.19164 6.54384 7.45823 7.71046 8.73114 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013574 B = 0.002984 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.300818 B = 9381.035032 C =10229.656846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.200 4.200 3 C 0.129 3.871 4 N -0.472 5.472 5 C 0.196 3.804 6 C 0.018 3.982 7 H 0.091 0.909 8 C -0.116 4.116 9 C 0.037 3.963 10 C -0.604 4.604 11 H 0.067 0.933 12 C -0.041 4.041 13 N -0.940 5.940 14 Si 1.118 2.882 15 H -0.290 1.290 16 H -0.267 1.267 17 H -0.263 1.263 18 N -0.325 5.325 19 N -0.355 5.355 20 C 0.352 3.648 21 N -0.427 5.427 22 C 0.050 3.950 23 C -0.128 4.128 24 H 0.127 0.873 25 C 0.065 3.935 26 O -0.402 6.402 27 C 0.087 3.913 28 C -0.132 4.132 29 C -0.153 4.153 30 C 0.078 3.922 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.039 0.961 38 H 0.061 0.939 39 H -0.015 1.015 40 H -0.026 1.026 41 H 0.250 0.750 42 H 0.052 0.948 43 H 0.119 0.881 44 H 0.113 0.887 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.035 0.965 49 H 0.072 0.928 50 H 0.052 0.948 51 H 0.117 0.883 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.416 1.636 6.381 26.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.219 4.219 3 C 0.008 3.992 4 N -0.166 5.166 5 C -0.073 4.073 6 C -0.003 4.003 7 H 0.109 0.891 8 C -0.174 4.174 9 C -0.001 4.001 10 C -0.641 4.641 11 H 0.086 0.914 12 C -0.238 4.238 13 N -0.578 5.578 14 Si 0.939 3.061 15 H -0.216 1.216 16 H -0.192 1.192 17 H -0.188 1.188 18 N -0.163 5.163 19 N -0.199 5.199 20 C -0.005 4.005 21 N -0.151 5.151 22 C -0.075 4.075 23 C -0.147 4.147 24 H 0.145 0.855 25 C -0.011 4.011 26 O -0.322 6.322 27 C 0.010 3.990 28 C -0.133 4.133 29 C -0.209 4.209 30 C -0.048 4.048 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.120 0.880 34 H 0.139 0.861 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.003 0.997 40 H -0.008 1.008 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.137 0.863 44 H 0.131 0.869 45 H 0.085 0.915 46 H 0.112 0.888 47 H 0.101 0.899 48 H 0.054 0.946 49 H 0.091 0.909 50 H 0.071 0.929 51 H 0.135 0.865 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.680 1.718 6.559 24.632 hybrid contribution -0.662 0.236 0.274 0.755 sum -24.342 1.955 6.832 25.359 Atomic orbital electron populations 1.24133 0.94410 1.03970 0.94310 1.22883 0.97072 0.96685 1.05306 1.21335 0.91619 0.99311 0.86917 1.46378 1.11577 1.47589 1.11023 1.25191 0.82818 1.01777 0.97498 1.19546 0.94973 0.95832 0.89988 0.89124 1.21563 1.00628 0.93519 1.01702 1.18990 0.92364 0.92948 0.95756 1.22353 1.13776 1.15976 1.12038 0.91432 1.27478 0.96478 0.94432 1.05382 1.70913 1.42482 1.24289 1.20088 0.82941 0.75490 0.75806 0.71898 1.21591 1.19159 1.18768 1.73895 1.23656 1.17278 1.01457 1.74371 0.96949 1.21788 1.26788 1.22925 0.92974 1.01343 0.83280 1.62288 1.19783 1.27918 1.05099 1.22797 0.99829 0.87878 0.96995 1.23343 1.00062 0.96386 0.94956 0.85513 1.22880 1.03245 0.92175 0.82769 1.89370 1.82437 1.43148 1.17248 1.21983 0.98052 0.86722 0.92214 1.21969 0.96194 0.96059 0.99061 1.22322 0.96661 1.01302 1.00664 1.21857 1.04753 0.92407 0.85749 0.86218 0.86335 0.87974 0.86139 0.88114 0.90860 0.94175 0.91964 0.99705 1.00761 0.94059 0.92945 0.86263 0.86918 0.91451 0.88754 0.89948 0.94555 0.90893 0.92868 0.86490 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 14.32 67.79 0.97 -0.75 16 2 C -0.20 -3.89 9.85 25.65 0.25 -3.64 16 3 C 0.13 2.90 6.22 85.63 0.53 3.43 16 4 N -0.47 -14.99 2.79 -518.92 -1.45 -16.44 16 5 C 0.20 7.92 6.58 137.64 0.91 8.83 16 6 C 0.02 0.73 2.70 -11.54 -0.03 0.70 16 7 H 0.09 3.41 6.95 -2.38 -0.02 3.39 16 8 C -0.12 -4.48 8.98 71.98 0.65 -3.83 16 9 C 0.04 2.00 3.74 29.85 0.11 2.11 16 10 C -0.60 -33.39 8.41 25.60 0.22 -33.18 16 11 H 0.07 3.47 7.06 -2.92 -0.02 3.45 16 12 C -0.04 -2.35 5.46 84.66 0.46 -1.89 16 13 N -0.94 -59.72 13.65 21.45 0.29 -59.43 16 14 Si 1.12 49.39 29.90 68.60 2.05 51.44 16 15 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 16 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 17 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 18 N -0.33 -14.73 12.18 -49.54 -0.60 -15.33 16 19 N -0.36 -14.12 10.51 -58.01 -0.61 -14.73 16 20 C 0.35 11.16 6.29 260.11 1.64 12.80 16 21 N -0.43 -9.56 5.34 -699.53 -3.73 -13.30 16 22 C 0.05 0.86 4.87 85.10 0.41 1.27 16 23 C -0.13 -1.73 3.23 -9.94 -0.03 -1.76 16 24 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 25 C 0.07 0.91 7.01 71.48 0.50 1.41 16 26 O -0.40 -7.14 11.47 -148.98 -1.71 -8.85 16 27 C 0.09 1.29 6.92 70.81 0.49 1.78 16 28 C -0.13 -2.27 1.55 -52.62 -0.08 -2.36 16 29 C -0.15 -3.51 7.37 71.98 0.53 -2.98 16 30 C 0.08 1.60 6.02 84.55 0.51 2.11 16 31 H 0.12 1.09 7.84 -2.91 -0.02 1.06 16 32 H 0.12 1.26 8.06 -2.91 -0.02 1.24 16 33 H 0.10 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.12 1.99 5.16 -2.38 -0.01 1.98 16 35 H 0.10 2.37 7.23 -2.39 -0.02 2.35 16 36 H 0.07 2.82 6.95 -2.39 -0.02 2.81 16 37 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 39 H -0.02 -0.93 8.01 -2.39 -0.02 -0.95 16 40 H -0.03 -1.51 8.01 -2.39 -0.02 -1.53 16 41 H 0.25 16.49 7.22 -92.71 -0.67 15.82 16 42 H 0.05 1.15 5.73 -2.39 -0.01 1.14 16 43 H 0.12 1.40 6.71 -2.39 -0.02 1.38 16 44 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.07 1.05 6.14 -2.39 -0.01 1.03 16 46 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.08 1.23 7.98 -2.38 -0.02 1.21 16 48 H 0.04 1.02 4.74 -2.39 -0.01 1.01 16 49 H 0.07 1.54 5.79 -2.39 -0.01 1.53 16 50 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 52 H 0.08 2.12 6.27 -2.39 -0.01 2.10 16 Total: -1.00 -76.72 397.58 3.29 -73.43 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 1.02 Total: 19.16 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 8.04 Total: -15.94 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -6.10 Total: -119.23 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -1.71 Total: -8.85 kcal Atomic # 14 Polarization: 49.39 SS G_CDS: 2.05 Total: 51.44 kcal Total: -76.72 3.29 -73.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121501784.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.413 kcal (2) G-P(sol) polarization free energy of solvation -76.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds