Wall clock time and date at job start Wed Apr 1 2020 04:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50709 * 120.00163 * 2 1 4 4 N 1.46500 * 109.47049 * 125.19185 * 3 2 1 5 5 C 1.36738 * 127.13978 * 270.82676 * 4 3 2 6 6 C 1.50703 * 126.34759 * 0.02562 * 5 4 3 7 7 H 1.09007 * 109.46915 * 359.97438 * 6 5 4 8 8 C 1.52999 * 109.47142 * 239.99993 * 6 5 4 9 9 C 1.52996 * 109.47221 * 119.99431 * 6 5 4 10 10 C 1.50703 * 109.47148 * 184.99971 * 9 6 5 11 11 H 1.07999 * 120.00034 * 0.02562 * 10 9 6 12 12 C 1.37871 * 120.00048 * 180.02562 * 10 9 6 13 13 N 1.31520 * 120.00470 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 120.00185 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.47163 * 89.99681 * 14 12 10 16 16 H 1.48502 * 109.47391 * 210.00084 * 14 12 10 17 17 H 1.48498 * 109.46868 * 329.99756 * 14 12 10 18 18 N 1.30291 * 107.30496 * 179.97438 * 5 4 3 19 19 N 1.28524 * 110.05309 * 0.02562 * 18 5 4 20 20 C 1.31214 * 109.86350 * 0.02562 * 19 18 5 21 21 N 1.38582 * 126.47522 * 179.97438 * 20 19 18 22 22 C 1.48506 * 110.99640 * 35.68976 * 21 20 19 23 23 C 1.54268 * 104.74117 * 200.66867 * 22 21 20 24 24 H 1.09003 * 112.65605 * 260.95140 * 23 22 21 25 25 C 1.54385 * 108.77776 * 135.27234 * 23 22 21 26 26 O 1.44384 * 104.91924 * 272.86259 * 25 23 22 27 27 C 1.44387 * 105.25666 * 319.23964 * 26 25 23 28 28 C 1.55478 * 104.81437 * 23.99540 * 23 22 21 29 29 C 1.53000 * 112.83179 * 236.43263 * 28 23 22 30 30 C 1.48508 * 110.99821 * 280.30327 * 21 20 19 31 31 H 1.08006 * 120.00162 * 180.02562 * 1 2 3 32 32 H 1.08005 * 120.00369 * 359.97438 * 1 2 3 33 33 H 1.08005 * 120.00369 * 180.02562 * 2 1 3 34 34 H 1.09003 * 109.46604 * 5.19216 * 3 2 1 35 35 H 1.08997 * 109.47188 * 245.19973 * 3 2 1 36 36 H 1.08993 * 109.47258 * 180.02562 * 8 6 5 37 37 H 1.09005 * 109.46579 * 299.99453 * 8 6 5 38 38 H 1.08998 * 109.47522 * 59.99587 * 8 6 5 39 39 H 1.08999 * 109.47366 * 305.00264 * 9 6 5 40 40 H 1.09005 * 109.47198 * 65.00314 * 9 6 5 41 41 H 0.96990 * 120.00603 * 180.02562 * 13 12 10 42 42 H 1.08995 * 110.38968 * 319.48413 * 22 21 20 43 43 H 1.09001 * 110.38331 * 81.85801 * 22 21 20 44 44 H 1.09002 * 110.35151 * 31.72549 * 25 23 22 45 45 H 1.09007 * 110.35271 * 153.89323 * 25 23 22 46 46 H 1.08996 * 110.34900 * 159.61976 * 27 26 25 47 47 H 1.08994 * 110.35054 * 281.79537 * 27 26 25 48 48 H 1.08994 * 109.47208 * 59.99773 * 29 28 23 49 49 H 1.09001 * 109.47180 * 180.02562 * 29 28 23 50 50 H 1.09004 * 109.46803 * 299.99571 * 29 28 23 51 51 H 1.08998 * 110.37962 * 278.14672 * 30 21 20 52 52 H 1.09002 * 110.38242 * 40.51385 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9970 1.3300 1.1288 5 6 2.7469 1.7750 2.3973 6 6 1.4450 2.3386 2.9057 7 1 0.7113 2.3424 2.0995 8 6 1.6669 3.7696 3.3994 9 6 0.9313 1.4749 4.0593 10 6 -0.4284 1.9646 4.4867 11 1 -0.8810 2.8073 3.9853 12 6 -1.0945 1.3368 5.5177 13 7 -2.2813 1.7638 5.8904 14 14 -0.3114 -0.1203 6.3855 15 1 0.4973 0.3633 7.5333 16 1 -1.3743 -1.0328 6.8783 17 1 0.5654 -0.8499 5.4346 18 7 3.8426 1.6205 3.0853 19 7 4.7609 1.1126 2.3433 20 6 4.2968 0.9146 1.1321 21 7 4.9945 0.3833 0.0591 22 6 5.9384 -0.6717 0.5080 23 6 6.9758 -0.7799 -0.6286 24 1 6.7747 -1.6124 -1.3028 25 6 8.3880 -0.8441 -0.0081 26 8 8.7867 0.5344 0.1519 27 6 8.3360 1.2018 -1.0465 28 6 6.9279 0.6001 -1.3432 29 6 6.6243 0.4843 -2.8383 30 6 5.8662 1.4085 -0.5691 31 1 -0.5401 -0.9353 0.0004 32 1 -0.5401 0.9353 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3588 2.1315 0.0930 35 1 2.6185 1.4043 -0.9329 36 1 0.7254 4.1771 3.7675 37 1 2.4007 3.7661 4.2055 38 1 2.0329 4.3850 2.5775 39 1 0.8576 0.4378 3.7320 40 1 1.6224 1.5425 4.8996 41 1 -2.7498 1.3224 6.6160 42 1 6.4237 -0.3762 1.4381 43 1 5.4154 -1.6195 0.6361 44 1 8.3543 -1.3437 0.9601 45 1 9.0733 -1.3633 -0.6781 46 1 8.2623 2.2760 -0.8772 47 1 9.0148 0.9948 -1.8738 48 1 5.6554 0.0045 -2.9762 49 1 6.6041 1.4792 -3.2831 50 1 7.3977 -0.1134 -3.3208 51 1 5.2887 2.0300 -1.2535 52 1 6.3404 2.0238 0.1955 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121501785.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:05 Heat of formation + Delta-G solvation = 64.219561 kcal Electronic energy + Delta-G solvation = -31906.614015 eV Core-core repulsion = 27908.270666 eV Total energy + Delta-G solvation = -3998.343349 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.76485 -40.93653 -37.23212 -36.14522 -35.25680 -33.47332 -32.60634 -32.15949 -31.39288 -28.81196 -27.50754 -26.93481 -26.69706 -26.44457 -24.61229 -23.98133 -22.05519 -21.45955 -20.99343 -19.92204 -19.72128 -19.06125 -17.34034 -16.87812 -16.54320 -16.25570 -15.99167 -15.90341 -15.35965 -14.91010 -14.61213 -14.34177 -14.24966 -13.97329 -13.73886 -13.44505 -13.40872 -13.29871 -12.81341 -12.65494 -12.55670 -12.29719 -12.08017 -11.92297 -11.56626 -11.54351 -11.37373 -11.30387 -11.18433 -11.12164 -11.07003 -10.96672 -10.84182 -10.50309 -10.10395 -10.04621 -10.00029 -9.83048 -9.79859 -9.55481 -9.19088 -9.07944 -8.53950 -8.38958 -6.05940 -4.04190 1.85789 2.05273 2.65124 3.16462 3.34506 3.41334 3.48353 3.55046 3.80461 3.87282 4.01886 4.45664 4.46728 4.57303 4.62994 4.71056 4.75899 4.77940 4.82363 4.97921 5.07178 5.10821 5.12847 5.21009 5.28082 5.30391 5.33650 5.40105 5.42570 5.44042 5.50542 5.52510 5.57138 5.68437 5.77827 5.83886 5.88632 5.93888 5.99726 6.13980 6.19077 6.29180 6.45365 6.51281 6.59498 6.62069 6.69756 6.75930 6.99178 7.21573 7.33875 7.39129 7.74782 8.48239 8.96297 9.08565 9.56903 11.06659 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.002892 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.104419 B = 9679.274029 C =10126.074602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.185 4.185 3 C 0.145 3.855 4 N -0.464 5.464 5 C 0.217 3.783 6 C 0.009 3.991 7 H 0.077 0.923 8 C -0.128 4.128 9 C 0.003 3.997 10 C -0.516 4.516 11 H 0.076 0.924 12 C 0.072 3.928 13 N -0.902 5.902 14 Si 0.874 3.126 15 H -0.274 1.274 16 H -0.288 1.288 17 H -0.267 1.267 18 N -0.288 5.288 19 N -0.312 5.312 20 C 0.313 3.687 21 N -0.432 5.432 22 C 0.053 3.947 23 C -0.120 4.120 24 H 0.103 0.897 25 C 0.050 3.950 26 O -0.366 6.366 27 C 0.053 3.947 28 C -0.093 4.093 29 C -0.125 4.125 30 C 0.054 3.946 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.033 0.967 39 H 0.014 0.986 40 H 0.026 0.974 41 H 0.263 0.737 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.062 0.938 46 H 0.093 0.907 47 H 0.063 0.937 48 H 0.068 0.932 49 H 0.061 0.939 50 H 0.060 0.940 51 H 0.084 0.916 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.122 -3.805 -21.641 27.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.204 4.204 3 C 0.023 3.977 4 N -0.157 5.157 5 C -0.050 4.050 6 C -0.012 4.012 7 H 0.096 0.904 8 C -0.186 4.186 9 C -0.035 4.035 10 C -0.554 4.554 11 H 0.094 0.906 12 C -0.130 4.130 13 N -0.540 5.540 14 Si 0.701 3.299 15 H -0.200 1.200 16 H -0.214 1.214 17 H -0.191 1.191 18 N -0.127 5.127 19 N -0.155 5.155 20 C -0.043 4.043 21 N -0.157 5.157 22 C -0.075 4.075 23 C -0.139 4.139 24 H 0.122 0.878 25 C -0.027 4.027 26 O -0.285 6.285 27 C -0.024 4.024 28 C -0.094 4.094 29 C -0.183 4.183 30 C -0.073 4.073 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.032 0.968 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.114 0.886 45 H 0.080 0.920 46 H 0.111 0.889 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.080 0.920 50 H 0.079 0.921 51 H 0.102 0.898 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.651 -3.907 -20.534 27.358 hybrid contribution -0.265 -0.827 -0.224 0.897 sum 17.386 -4.734 -20.758 27.487 Atomic orbital electron populations 1.23991 0.95463 1.02878 0.96273 1.22930 0.96160 0.97716 1.03550 1.20861 0.91553 0.97614 0.87709 1.46356 1.09954 1.47886 1.11471 1.25675 0.99725 0.99555 0.80093 1.19761 0.85635 0.96370 0.99472 0.90449 1.21705 1.03306 0.93526 1.00099 1.19567 0.97100 0.94341 0.92522 1.21001 1.00046 1.16681 1.17694 0.90574 1.24921 0.94596 0.96883 0.96554 1.69893 1.13461 1.41513 1.29167 0.86863 0.79151 0.83281 0.80582 1.20006 1.21445 1.19146 1.74037 0.97335 1.16691 1.24645 1.74506 1.23931 1.17070 1.00030 1.22403 0.84693 1.03861 0.93376 1.62162 1.23740 1.09151 1.20654 1.23193 0.91955 0.94660 0.97642 1.23377 0.95572 0.97964 0.96994 0.87842 1.23470 0.93163 0.84489 1.01595 1.89188 1.79470 1.20595 1.39210 1.23784 0.92576 0.98019 0.88071 1.22904 0.95345 0.94726 0.96396 1.21577 1.02369 1.02249 0.92057 1.23259 0.92924 0.93467 0.97652 0.87682 0.87742 0.86946 0.88428 0.88191 0.90102 0.92080 0.94772 0.96789 0.95579 0.92696 0.90237 0.89685 0.88560 0.91961 0.88911 0.91885 0.91322 0.92040 0.92110 0.89789 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 14.32 29.02 0.42 -1.35 16 2 C -0.18 -2.30 9.85 -36.02 -0.35 -2.65 16 3 C 0.15 1.78 6.31 -5.19 -0.03 1.75 16 4 N -0.46 -7.49 2.79 -115.36 -0.32 -7.81 16 5 C 0.22 4.20 6.58 -154.02 -1.01 3.18 16 6 C 0.01 0.17 2.70 -91.77 -0.25 -0.07 16 7 H 0.08 1.43 6.96 -51.92 -0.36 1.07 16 8 C -0.13 -2.40 8.99 37.16 0.33 -2.07 16 9 C 0.00 0.07 3.50 -27.88 -0.10 -0.02 16 10 C -0.52 -14.12 8.96 -34.44 -0.31 -14.43 16 11 H 0.08 2.17 7.30 -52.49 -0.38 1.79 16 12 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 13 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 14 Si 0.87 22.21 27.47 -169.99 -4.67 17.54 16 15 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 17 H -0.27 -6.73 6.54 56.52 0.37 -6.36 16 18 N -0.29 -6.17 12.18 32.99 0.40 -5.77 16 19 N -0.31 -6.10 11.24 30.31 0.34 -5.76 16 20 C 0.31 5.08 6.69 -318.88 -2.13 2.95 16 21 N -0.43 -5.37 5.41 -170.32 -0.92 -6.29 16 22 C 0.05 0.60 5.82 -2.27 -0.01 0.59 16 23 C -0.12 -0.97 3.80 -87.91 -0.33 -1.30 16 24 H 0.10 0.67 7.96 -51.93 -0.41 0.26 16 25 C 0.05 0.41 6.86 37.88 0.26 0.67 16 26 O -0.37 -3.99 11.65 -35.23 -0.41 -4.40 16 27 C 0.05 0.43 6.53 38.75 0.25 0.68 16 28 C -0.09 -0.72 1.14 -150.94 -0.17 -0.89 16 29 C -0.13 -0.71 8.85 37.16 0.33 -0.38 16 30 C 0.05 0.57 5.56 -2.27 -0.01 0.55 16 31 H 0.10 1.15 8.06 -52.48 -0.42 0.73 16 32 H 0.10 1.18 7.84 -52.48 -0.41 0.77 16 33 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 34 H 0.10 1.11 6.92 -51.93 -0.36 0.75 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.58 6.95 -51.93 -0.36 1.22 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 40 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.08 1.10 6.73 -51.93 -0.35 0.75 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.10 0.79 7.75 -51.93 -0.40 0.38 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 0.72 7.78 -51.93 -0.40 0.32 16 47 H 0.06 0.40 8.01 -51.93 -0.42 -0.02 16 48 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 51 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 52 H 0.06 0.82 7.41 -51.93 -0.38 0.44 16 LS Contribution 411.25 15.07 6.20 6.20 Total: -1.00 -33.67 411.25 -10.66 -44.33 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -8.82 Total: -0.75 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -3.23 Total: -10.83 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.27 Total: -52.08 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.41 Total: -4.40 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.67 -10.66 -44.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121501785.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.545 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds