Wall clock time and date at job start Wed Apr 1 2020 04:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50709 * 120.00163 * 2 1 4 4 N 1.46500 * 109.47049 * 125.19185 * 3 2 1 5 5 C 1.36738 * 127.13978 * 270.82676 * 4 3 2 6 6 C 1.50703 * 126.34759 * 0.02562 * 5 4 3 7 7 H 1.09007 * 109.46915 * 359.97438 * 6 5 4 8 8 C 1.52999 * 109.47142 * 239.99993 * 6 5 4 9 9 C 1.52996 * 109.47221 * 119.99431 * 6 5 4 10 10 C 1.50703 * 109.47148 * 184.99971 * 9 6 5 11 11 H 1.07999 * 120.00034 * 0.02562 * 10 9 6 12 12 C 1.37871 * 120.00048 * 180.02562 * 10 9 6 13 13 N 1.31520 * 120.00470 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 120.00185 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.47163 * 89.99681 * 14 12 10 16 16 H 1.48502 * 109.47391 * 210.00084 * 14 12 10 17 17 H 1.48498 * 109.46868 * 329.99756 * 14 12 10 18 18 N 1.30291 * 107.30496 * 179.97438 * 5 4 3 19 19 N 1.28524 * 110.05309 * 0.02562 * 18 5 4 20 20 C 1.31214 * 109.86350 * 0.02562 * 19 18 5 21 21 N 1.38582 * 126.47522 * 179.97438 * 20 19 18 22 22 C 1.48506 * 110.99640 * 35.68976 * 21 20 19 23 23 C 1.54268 * 104.74117 * 200.66867 * 22 21 20 24 24 H 1.09003 * 112.65605 * 260.95140 * 23 22 21 25 25 C 1.54385 * 108.77776 * 135.27234 * 23 22 21 26 26 O 1.44384 * 104.91924 * 272.86259 * 25 23 22 27 27 C 1.44387 * 105.25666 * 319.23964 * 26 25 23 28 28 C 1.55478 * 104.81437 * 23.99540 * 23 22 21 29 29 C 1.53000 * 112.83179 * 236.43263 * 28 23 22 30 30 C 1.48508 * 110.99821 * 280.30327 * 21 20 19 31 31 H 1.08006 * 120.00162 * 180.02562 * 1 2 3 32 32 H 1.08005 * 120.00369 * 359.97438 * 1 2 3 33 33 H 1.08005 * 120.00369 * 180.02562 * 2 1 3 34 34 H 1.09003 * 109.46604 * 5.19216 * 3 2 1 35 35 H 1.08997 * 109.47188 * 245.19973 * 3 2 1 36 36 H 1.08993 * 109.47258 * 180.02562 * 8 6 5 37 37 H 1.09005 * 109.46579 * 299.99453 * 8 6 5 38 38 H 1.08998 * 109.47522 * 59.99587 * 8 6 5 39 39 H 1.08999 * 109.47366 * 305.00264 * 9 6 5 40 40 H 1.09005 * 109.47198 * 65.00314 * 9 6 5 41 41 H 0.96990 * 120.00603 * 180.02562 * 13 12 10 42 42 H 1.08995 * 110.38968 * 319.48413 * 22 21 20 43 43 H 1.09001 * 110.38331 * 81.85801 * 22 21 20 44 44 H 1.09002 * 110.35151 * 31.72549 * 25 23 22 45 45 H 1.09007 * 110.35271 * 153.89323 * 25 23 22 46 46 H 1.08996 * 110.34900 * 159.61976 * 27 26 25 47 47 H 1.08994 * 110.35054 * 281.79537 * 27 26 25 48 48 H 1.08994 * 109.47208 * 59.99773 * 29 28 23 49 49 H 1.09001 * 109.47180 * 180.02562 * 29 28 23 50 50 H 1.09004 * 109.46803 * 299.99571 * 29 28 23 51 51 H 1.08998 * 110.37962 * 278.14672 * 30 21 20 52 52 H 1.09002 * 110.38242 * 40.51385 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9970 1.3300 1.1288 5 6 2.7469 1.7750 2.3973 6 6 1.4450 2.3386 2.9057 7 1 0.7113 2.3424 2.0995 8 6 1.6669 3.7696 3.3994 9 6 0.9313 1.4749 4.0593 10 6 -0.4284 1.9646 4.4867 11 1 -0.8810 2.8073 3.9853 12 6 -1.0945 1.3368 5.5177 13 7 -2.2813 1.7638 5.8904 14 14 -0.3114 -0.1203 6.3855 15 1 0.4973 0.3633 7.5333 16 1 -1.3743 -1.0328 6.8783 17 1 0.5654 -0.8499 5.4346 18 7 3.8426 1.6205 3.0853 19 7 4.7609 1.1126 2.3433 20 6 4.2968 0.9146 1.1321 21 7 4.9945 0.3833 0.0591 22 6 5.9384 -0.6717 0.5080 23 6 6.9758 -0.7799 -0.6286 24 1 6.7747 -1.6124 -1.3028 25 6 8.3880 -0.8441 -0.0081 26 8 8.7867 0.5344 0.1519 27 6 8.3360 1.2018 -1.0465 28 6 6.9279 0.6001 -1.3432 29 6 6.6243 0.4843 -2.8383 30 6 5.8662 1.4085 -0.5691 31 1 -0.5401 -0.9353 0.0004 32 1 -0.5401 0.9353 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3588 2.1315 0.0930 35 1 2.6185 1.4043 -0.9329 36 1 0.7254 4.1771 3.7675 37 1 2.4007 3.7661 4.2055 38 1 2.0329 4.3850 2.5775 39 1 0.8576 0.4378 3.7320 40 1 1.6224 1.5425 4.8996 41 1 -2.7498 1.3224 6.6160 42 1 6.4237 -0.3762 1.4381 43 1 5.4154 -1.6195 0.6361 44 1 8.3543 -1.3437 0.9601 45 1 9.0733 -1.3633 -0.6781 46 1 8.2623 2.2760 -0.8772 47 1 9.0148 0.9948 -1.8738 48 1 5.6554 0.0045 -2.9762 49 1 6.6041 1.4792 -3.2831 50 1 7.3977 -0.1134 -3.3208 51 1 5.2887 2.0300 -1.2535 52 1 6.3404 2.0238 0.1955 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121501785.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:03 Heat of formation + Delta-G solvation = 44.920563 kcal Electronic energy + Delta-G solvation = -31907.450882 eV Core-core repulsion = 27908.270666 eV Total energy + Delta-G solvation = -3999.180216 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.12115 -41.70039 -38.17228 -37.39444 -36.80516 -34.51338 -34.12147 -33.61143 -32.19085 -30.31620 -29.22723 -27.89541 -27.40670 -27.23304 -25.74381 -25.49528 -23.54237 -22.50587 -22.13029 -20.95277 -20.61643 -20.37710 -19.11937 -18.27887 -17.47471 -17.39991 -17.04791 -16.60496 -16.37064 -16.11984 -15.90577 -15.75188 -15.32285 -15.26986 -15.05769 -14.67857 -14.62075 -14.21886 -13.85673 -13.78516 -13.59756 -13.41673 -13.23650 -13.04472 -12.98936 -12.76052 -12.66099 -12.59136 -12.50923 -12.21180 -12.01715 -11.90250 -11.88646 -11.80981 -11.71574 -11.63842 -11.55873 -11.28019 -11.11859 -10.77187 -10.76163 -10.52910 -10.31097 -9.73661 -8.29022 -6.29852 0.60310 0.91611 1.30487 1.33810 1.43868 1.54860 1.71761 2.33542 2.64461 3.05817 3.06612 3.17709 3.26641 3.36362 3.64503 3.79246 3.80526 3.88035 3.94421 4.04740 4.05847 4.09318 4.19301 4.26780 4.30906 4.44708 4.47236 4.54054 4.56697 4.59186 4.66498 4.69537 4.71942 4.81138 4.84108 4.92394 4.95745 4.99792 5.01176 5.05228 5.07736 5.09042 5.22575 5.30299 5.30802 5.39281 5.43676 5.51991 5.56700 5.64305 5.66812 5.84320 6.13125 6.27069 6.75333 7.33935 7.66789 8.86295 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.002892 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.104419 B = 9679.274029 C =10126.074602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.193 4.193 3 C 0.139 3.861 4 N -0.459 5.459 5 C 0.205 3.795 6 C 0.017 3.983 7 H 0.094 0.906 8 C -0.121 4.121 9 C 0.012 3.988 10 C -0.510 4.510 11 H 0.059 0.941 12 C 0.022 3.978 13 N -0.940 5.940 14 Si 0.927 3.073 15 H -0.273 1.273 16 H -0.279 1.279 17 H -0.266 1.266 18 N -0.325 5.325 19 N -0.349 5.349 20 C 0.333 3.667 21 N -0.424 5.424 22 C 0.048 3.952 23 C -0.109 4.109 24 H 0.130 0.870 25 C 0.047 3.953 26 O -0.401 6.401 27 C 0.049 3.951 28 C -0.082 4.082 29 C -0.120 4.120 30 C 0.053 3.947 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.127 0.873 36 H 0.068 0.932 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.004 0.996 40 H 0.009 0.991 41 H 0.266 0.734 42 H 0.050 0.950 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.067 0.933 49 H 0.070 0.930 50 H 0.078 0.922 51 H 0.100 0.900 52 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.276 -4.765 -24.822 31.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.212 4.212 3 C 0.018 3.982 4 N -0.151 5.151 5 C -0.063 4.063 6 C -0.004 4.004 7 H 0.112 0.888 8 C -0.179 4.179 9 C -0.026 4.026 10 C -0.548 4.548 11 H 0.077 0.923 12 C -0.176 4.176 13 N -0.581 5.581 14 Si 0.752 3.248 15 H -0.198 1.198 16 H -0.204 1.204 17 H -0.191 1.191 18 N -0.164 5.164 19 N -0.193 5.193 20 C -0.024 4.024 21 N -0.149 5.149 22 C -0.079 4.079 23 C -0.128 4.128 24 H 0.148 0.852 25 C -0.030 4.030 26 O -0.320 6.320 27 C -0.027 4.027 28 C -0.083 4.083 29 C -0.177 4.177 30 C -0.074 4.074 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.145 0.855 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.022 0.978 40 H 0.028 0.972 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.086 0.914 49 H 0.089 0.911 50 H 0.097 0.903 51 H 0.118 0.882 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 18.808 -4.869 -23.737 30.674 hybrid contribution -0.597 -0.510 0.688 1.044 sum 18.211 -5.379 -23.049 29.863 Atomic orbital electron populations 1.24170 0.95441 1.03618 0.95309 1.22908 0.96332 0.97564 1.04384 1.21223 0.91576 0.98041 0.87339 1.46498 1.10331 1.46903 1.11319 1.25318 0.98991 1.00580 0.81461 1.19540 0.86437 0.96006 0.98397 0.88792 1.21612 1.02279 0.93352 1.00682 1.19378 0.95101 0.94479 0.93661 1.21226 1.01008 1.15623 1.16909 0.92328 1.25618 0.95061 0.99368 0.97588 1.69992 1.14807 1.43095 1.30183 0.86016 0.78496 0.80700 0.79540 1.19843 1.20420 1.19077 1.73934 0.98388 1.17837 1.26283 1.74440 1.24327 1.18896 1.01611 1.22816 0.84860 1.01412 0.93329 1.62428 1.24179 1.09637 1.18656 1.23258 0.92518 0.94129 0.98011 1.23407 0.94232 0.99160 0.95984 0.85183 1.23601 0.93735 0.83658 1.01960 1.89158 1.79933 1.22047 1.40886 1.23937 0.93117 0.97747 0.87933 1.22917 0.94140 0.93637 0.97602 1.21572 1.02912 1.03286 0.89904 1.23365 0.93469 0.93350 0.97250 0.86955 0.87125 0.87439 0.87217 0.85521 0.91308 0.93484 0.91878 0.97781 0.97228 0.92477 0.93197 0.89557 0.89394 0.89284 0.89333 0.89406 0.91379 0.91057 0.90325 0.88175 0.94523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 14.32 67.79 0.97 -2.27 16 2 C -0.19 -4.44 9.85 25.66 0.25 -4.18 16 3 C 0.14 3.09 6.31 85.64 0.54 3.63 16 4 N -0.46 -14.30 2.79 -518.90 -1.45 -15.75 16 5 C 0.21 7.91 6.58 137.64 0.91 8.82 16 6 C 0.02 0.68 2.70 -11.54 -0.03 0.65 16 7 H 0.09 3.36 6.96 -2.38 -0.02 3.35 16 8 C -0.12 -4.52 8.99 71.98 0.65 -3.87 16 9 C 0.01 0.60 3.50 29.85 0.10 0.70 16 10 C -0.51 -28.18 8.96 25.60 0.23 -27.95 16 11 H 0.06 3.39 7.30 -2.91 -0.02 3.37 16 12 C 0.02 1.25 5.47 84.65 0.46 1.71 16 13 N -0.94 -57.43 13.96 21.45 0.30 -57.13 16 14 Si 0.93 46.13 27.47 68.60 1.88 48.01 16 15 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 16 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 17 H -0.27 -13.11 6.54 99.48 0.65 -12.45 16 18 N -0.33 -14.21 12.18 -49.54 -0.60 -14.82 16 19 N -0.35 -13.97 11.24 -58.01 -0.65 -14.62 16 20 C 0.33 10.66 6.69 260.11 1.74 12.40 16 21 N -0.42 -9.95 5.41 -692.78 -3.75 -13.71 16 22 C 0.05 1.06 5.82 86.42 0.50 1.56 16 23 C -0.11 -1.50 3.80 -9.04 -0.03 -1.53 16 24 H 0.13 1.16 7.96 -2.39 -0.02 1.14 16 25 C 0.05 0.70 6.86 72.45 0.50 1.19 16 26 O -0.40 -8.38 11.65 -148.98 -1.74 -10.12 16 27 C 0.05 0.69 6.53 73.01 0.48 1.17 16 28 C -0.08 -1.05 1.14 -49.87 -0.06 -1.11 16 29 C -0.12 -0.85 8.85 71.98 0.64 -0.21 16 30 C 0.05 1.01 5.56 86.42 0.48 1.49 16 31 H 0.11 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.11 2.28 7.84 -2.91 -0.02 2.25 16 33 H 0.11 2.58 8.06 -2.91 -0.02 2.56 16 34 H 0.11 2.20 6.92 -2.39 -0.02 2.18 16 35 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.07 2.70 6.95 -2.39 -0.02 2.69 16 37 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.00 0.20 7.20 -2.39 -0.02 0.18 16 40 H 0.01 0.49 7.57 -2.38 -0.02 0.47 16 41 H 0.27 15.32 8.31 -92.72 -0.77 14.55 16 42 H 0.05 1.42 6.73 -2.39 -0.02 1.40 16 43 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.09 1.41 7.75 -2.39 -0.02 1.39 16 45 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 46 H 0.09 1.28 7.78 -2.39 -0.02 1.26 16 47 H 0.09 0.81 8.01 -2.39 -0.02 0.79 16 48 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 50 H 0.08 0.33 8.14 -2.39 -0.02 0.32 16 51 H 0.10 1.59 7.93 -2.39 -0.02 1.58 16 52 H 0.04 0.93 7.41 -2.39 -0.02 0.91 16 Total: -1.00 -74.83 411.25 3.15 -71.68 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.84 Total: 14.24 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 8.32 Total: -7.79 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -6.16 Total: -116.02 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -1.74 Total: -10.12 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.88 Total: 48.01 kcal Total: -74.83 3.15 -71.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121501785.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.597 kcal (2) G-P(sol) polarization free energy of solvation -74.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds