Wall clock time and date at job start Wed Apr 1 2020 04:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99411 * 2 1 4 4 N 1.46496 * 109.47162 * 125.17629 * 3 2 1 5 5 C 1.36742 * 127.13503 * 270.80990 * 4 3 2 6 6 C 1.50705 * 126.34864 * 0.02562 * 5 4 3 7 7 H 1.09002 * 109.46365 * 0.02562 * 6 5 4 8 8 C 1.52991 * 109.47237 * 239.99926 * 6 5 4 9 9 C 1.53000 * 109.47102 * 119.99673 * 6 5 4 10 10 C 1.50698 * 109.46931 * 185.00107 * 9 6 5 11 11 H 1.07996 * 120.00268 * 0.02562 * 10 9 6 12 12 C 1.37881 * 119.99593 * 180.02562 * 10 9 6 13 13 N 1.31509 * 120.00282 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99716 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46949 * 90.00042 * 14 12 10 16 16 H 1.48494 * 109.47069 * 210.00006 * 14 12 10 17 17 H 1.48506 * 109.47001 * 330.00593 * 14 12 10 18 18 N 1.30294 * 107.30751 * 179.97438 * 5 4 3 19 19 N 1.28525 * 110.05312 * 359.72913 * 18 5 4 20 20 C 1.31218 * 109.86095 * 0.45057 * 19 18 5 21 21 N 1.38576 * 126.47576 * 179.82199 * 20 19 18 22 22 C 1.48015 * 111.00032 * 35.62724 * 21 20 19 23 23 C 1.54314 * 107.02454 * 214.42772 * 22 21 20 24 24 C 1.53197 * 104.76585 * 2.06388 * 23 22 21 25 25 C 1.53148 * 111.86315 * 141.57008 * 24 23 22 26 26 C 1.54814 * 103.54908 * 121.47059 * 25 24 23 27 27 O 1.44548 * 104.87348 * 23.72561 * 26 25 24 28 28 C 1.44760 * 105.51666 * 320.39180 * 27 26 25 29 29 C 1.48798 * 111.00073 * 277.97463 * 21 20 19 30 30 H 1.07999 * 120.00739 * 0.02562 * 1 2 3 31 31 H 1.08008 * 119.99648 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.00109 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.47485 * 5.17174 * 3 2 1 34 34 H 1.09009 * 109.46928 * 245.17217 * 3 2 1 35 35 H 1.09007 * 109.46954 * 59.99817 * 8 6 5 36 36 H 1.08995 * 109.47341 * 179.97438 * 8 6 5 37 37 H 1.09001 * 109.47298 * 300.00155 * 8 6 5 38 38 H 1.08994 * 109.47428 * 305.00362 * 9 6 5 39 39 H 1.08999 * 109.47076 * 65.00341 * 9 6 5 40 40 H 0.97001 * 120.00067 * 180.02562 * 13 12 10 41 41 H 1.08998 * 109.92513 * 95.08174 * 22 21 20 42 42 H 1.09004 * 109.92324 * 333.76786 * 22 21 20 43 43 H 1.08997 * 110.38239 * 120.88955 * 23 22 21 44 44 H 1.09005 * 110.38042 * 243.13164 * 23 22 21 45 45 H 1.09000 * 110.60283 * 239.98907 * 25 24 23 46 46 H 1.08998 * 110.60467 * 2.79475 * 25 24 23 47 47 H 1.08998 * 110.36230 * 142.57111 * 26 25 24 48 48 H 1.09000 * 110.36352 * 264.87781 * 26 25 24 49 49 H 1.09000 * 110.43254 * 280.42253 * 28 27 26 50 50 H 1.09001 * 110.43231 * 157.92946 * 28 27 26 51 51 H 1.08995 * 110.68666 * 39.88551 * 29 21 20 52 52 H 1.09004 * 110.82952 * 276.77914 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9966 1.3303 1.1290 5 6 2.7461 1.7758 2.3973 6 6 1.4441 2.3397 2.9051 7 1 0.7104 2.3424 2.0989 8 6 1.6659 3.7708 3.3984 9 6 0.9300 1.4764 4.0590 10 6 -0.4297 1.9663 4.4857 11 1 -0.8822 2.8088 3.9839 12 6 -1.0961 1.3389 5.5169 13 7 -0.5450 0.3133 6.1283 14 14 -2.7814 1.9466 6.0464 15 1 -3.8297 1.2384 5.2688 16 1 -2.9722 1.6775 7.4942 17 1 -2.8818 3.4071 5.7968 18 7 3.8415 1.6215 3.0857 19 7 4.7583 1.1075 2.3459 20 6 4.2960 0.9136 1.1333 21 7 4.9936 0.3806 0.0611 22 6 5.9296 -0.6749 0.5092 23 6 7.1732 -0.5919 -0.4007 24 6 6.8967 0.5920 -1.3329 25 6 8.1611 1.4131 -1.6024 26 6 8.3106 1.3540 -3.1421 27 8 6.9778 1.0876 -3.6343 28 6 6.4069 0.1322 -2.7088 29 6 5.8306 1.4185 -0.5994 30 1 -0.5401 0.9352 -0.0004 31 1 -0.5400 -0.9354 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1315 0.0926 34 1 2.6187 1.4041 -0.9328 35 1 2.0322 4.3858 2.5762 36 1 0.7241 4.1788 3.7652 37 1 2.3995 3.7677 4.2046 38 1 0.8564 0.4393 3.7320 39 1 1.6208 1.5443 4.8993 40 1 -1.0140 -0.1283 6.8535 41 1 5.4609 -1.6538 0.4092 42 1 6.2160 -0.5014 1.5465 43 1 8.0672 -0.4057 0.1944 44 1 7.2853 -1.5114 -0.9752 45 1 8.0283 2.4423 -1.2690 46 1 9.0237 0.9608 -1.1131 47 1 8.6725 2.3082 -3.5249 48 1 8.9879 0.5488 -3.4268 49 1 6.7706 -0.8721 -2.9261 50 1 5.3183 0.1618 -2.7546 51 1 6.2918 2.0706 0.1423 52 1 5.2400 2.0001 -1.3072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121601893.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:08 Heat of formation + Delta-G solvation = 59.517879 kcal Electronic energy + Delta-G solvation = -31566.970805 eV Core-core repulsion = 27568.423576 eV Total energy + Delta-G solvation = -3998.547229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.66540 -40.72696 -37.86694 -36.06270 -35.17696 -33.33109 -32.52987 -32.06474 -30.45413 -29.42155 -28.32362 -26.94556 -26.68798 -25.51302 -24.06533 -23.09042 -22.83597 -21.80035 -20.83956 -20.00726 -19.65055 -19.04093 -17.28909 -16.69999 -16.46929 -16.25034 -16.04857 -15.61631 -15.38578 -15.01997 -14.63912 -14.50560 -14.27212 -14.03503 -13.59872 -13.43041 -13.33856 -13.16144 -12.67633 -12.44467 -12.38972 -12.22908 -12.02196 -11.87112 -11.73591 -11.48551 -11.35699 -11.24794 -11.06260 -10.98505 -10.94833 -10.83660 -10.71762 -10.48143 -10.38490 -10.07607 -9.97145 -9.77963 -9.65325 -9.47862 -9.11535 -8.98994 -8.36936 -8.24254 -6.00039 -4.03553 1.93704 2.14471 2.72510 3.26633 3.30540 3.37738 3.39930 3.59390 3.73532 4.01531 4.14136 4.38762 4.43650 4.61417 4.69012 4.71045 4.79625 4.84955 4.93180 5.00413 5.08038 5.14446 5.20995 5.29118 5.35428 5.36798 5.39033 5.43275 5.48925 5.50539 5.55817 5.56509 5.66472 5.67880 5.76341 5.89871 5.95490 6.03796 6.09117 6.21891 6.28169 6.37631 6.46683 6.57705 6.66618 6.69063 6.80727 6.91373 7.04047 7.43422 7.64000 7.79230 7.99223 8.35202 9.01827 9.18332 9.59775 11.11027 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.002509 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.104691 B =11158.581179 C =11517.987345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.182 4.182 3 C 0.146 3.854 4 N -0.466 5.466 5 C 0.222 3.778 6 C -0.001 4.001 7 H 0.071 0.929 8 C -0.127 4.127 9 C 0.041 3.959 10 C -0.519 4.519 11 H 0.058 0.942 12 C 0.060 3.940 13 N -0.890 5.890 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.273 1.273 18 N -0.286 5.286 19 N -0.316 5.316 20 C 0.314 3.686 21 N -0.441 5.441 22 C 0.045 3.955 23 C -0.115 4.115 24 C -0.095 4.095 25 C -0.143 4.143 26 C 0.045 3.955 27 O -0.378 6.378 28 C 0.064 3.936 29 C 0.061 3.939 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.030 0.970 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.014 0.986 39 H 0.031 0.969 40 H 0.261 0.739 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.090 0.910 48 H 0.059 0.941 49 H 0.063 0.937 50 H 0.100 0.900 51 H 0.062 0.938 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.446 -0.107 -20.356 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.201 4.201 3 C 0.023 3.977 4 N -0.158 5.158 5 C -0.045 4.045 6 C -0.023 4.023 7 H 0.089 0.911 8 C -0.185 4.185 9 C 0.003 3.997 10 C -0.557 4.557 11 H 0.076 0.924 12 C -0.142 4.142 13 N -0.529 5.529 14 Si 0.718 3.282 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.198 1.198 18 N -0.125 5.125 19 N -0.160 5.160 20 C -0.042 4.042 21 N -0.166 5.166 22 C -0.082 4.082 23 C -0.153 4.153 24 C -0.096 4.096 25 C -0.181 4.181 26 C -0.032 4.032 27 O -0.297 6.297 28 C -0.012 4.012 29 C -0.066 4.066 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.050 0.950 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.032 0.968 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.102 0.898 47 H 0.108 0.892 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.118 0.882 51 H 0.080 0.920 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 14.896 -0.324 -19.593 24.614 hybrid contribution -1.232 0.184 0.009 1.246 sum 13.663 -0.140 -19.584 23.880 Atomic orbital electron populations 1.23953 0.95488 1.02711 0.96590 1.22931 0.96160 0.97748 1.03245 1.20841 0.91571 0.97552 0.87735 1.46355 1.09895 1.48094 1.11474 1.25670 0.99653 0.99310 0.79870 1.19996 0.85597 0.96576 1.00091 0.91054 1.21687 1.02939 0.93828 1.00011 1.19080 0.95989 0.93582 0.91097 1.21119 1.01979 1.15361 1.17246 0.92395 1.24995 0.97839 0.95005 0.96386 1.69980 1.38030 1.21393 1.23475 0.86622 0.84502 0.79168 0.77867 1.20761 1.21237 1.19809 1.74043 0.97434 1.16583 1.24438 1.74444 1.24258 1.17276 0.99994 1.22339 0.84748 1.03907 0.93250 1.61520 1.24965 1.09533 1.20597 1.22981 0.90928 0.94535 0.99759 1.22397 0.98050 0.97770 0.97056 1.21881 0.95197 0.96041 0.96487 1.22893 0.97092 1.01266 0.96852 1.23474 0.85496 1.01385 0.92824 1.89197 1.27793 1.62777 1.49896 1.23336 0.99947 0.92277 0.85661 1.23202 0.93045 0.93095 0.97228 0.87933 0.87712 0.86875 0.88578 0.88249 0.95047 0.90619 0.92042 0.96764 0.95075 0.92946 0.89721 0.90412 0.90277 0.90198 0.90196 0.89820 0.89155 0.92243 0.91870 0.88216 0.91998 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 14.32 29.01 0.42 -1.44 16 2 C -0.18 -2.38 9.85 -36.03 -0.35 -2.73 16 3 C 0.15 1.87 6.31 -5.20 -0.03 1.84 16 4 N -0.47 -7.78 2.79 -115.36 -0.32 -8.10 16 5 C 0.22 4.45 6.58 -154.01 -1.01 3.44 16 6 C 0.00 -0.03 2.70 -91.77 -0.25 -0.28 16 7 H 0.07 1.35 6.96 -51.93 -0.36 0.99 16 8 C -0.13 -2.40 8.98 37.15 0.33 -2.07 16 9 C 0.04 1.05 4.43 -27.88 -0.12 0.92 16 10 C -0.52 -14.02 8.41 -34.44 -0.29 -14.31 16 11 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 14 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 N -0.29 -6.32 12.18 32.99 0.40 -5.92 16 19 N -0.32 -6.26 11.05 30.31 0.34 -5.93 16 20 C 0.31 5.20 6.70 -318.88 -2.14 3.06 16 21 N -0.44 -5.53 5.31 -170.90 -0.91 -6.44 16 22 C 0.05 0.51 6.66 -2.52 -0.02 0.49 16 23 C -0.11 -0.90 6.10 -25.94 -0.16 -1.06 16 24 C -0.09 -0.77 0.86 -153.98 -0.13 -0.91 16 25 C -0.14 -0.98 6.38 -25.70 -0.16 -1.14 16 26 C 0.05 0.31 7.67 38.11 0.29 0.60 16 27 O -0.38 -3.66 11.66 -35.23 -0.41 -4.07 16 28 C 0.06 0.53 6.76 37.22 0.25 0.78 16 29 C 0.06 0.65 5.17 -2.49 -0.01 0.64 16 30 H 0.10 1.19 7.84 -52.49 -0.41 0.78 16 31 H 0.10 1.21 8.06 -52.48 -0.42 0.79 16 32 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 33 H 0.10 1.14 6.92 -51.93 -0.36 0.78 16 34 H 0.10 1.07 8.14 -51.92 -0.42 0.64 16 35 H 0.03 0.51 8.14 -51.92 -0.42 0.08 16 36 H 0.07 1.44 6.95 -51.93 -0.36 1.08 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.08 1.05 6.90 -51.93 -0.36 0.69 16 43 H 0.08 0.58 7.53 -51.93 -0.39 0.19 16 44 H 0.08 0.51 7.46 -51.93 -0.39 0.12 16 45 H 0.08 0.57 7.68 -51.93 -0.40 0.17 16 46 H 0.08 0.47 7.44 -51.93 -0.39 0.09 16 47 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.06 0.45 7.51 -51.93 -0.39 0.06 16 50 H 0.10 0.86 7.85 -51.93 -0.41 0.46 16 51 H 0.06 0.75 7.79 -51.93 -0.40 0.35 16 52 H 0.09 0.92 8.00 -51.93 -0.42 0.50 16 LS Contribution 413.91 15.07 6.24 6.24 Total: -1.00 -33.12 413.91 -11.20 -44.32 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -8.77 Total: 0.27 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -3.49 Total: -10.58 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.24 Total: -52.34 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: -0.41 Total: -4.07 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.12 -11.20 -44.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121601893.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.839 kcal (2) G-P(sol) polarization free energy of solvation -33.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds