Wall clock time and date at job start Wed Apr 1 2020 04:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99411 * 2 1 4 4 N 1.46496 * 109.47162 * 125.17629 * 3 2 1 5 5 C 1.36742 * 127.13503 * 270.80990 * 4 3 2 6 6 C 1.50705 * 126.34864 * 0.02562 * 5 4 3 7 7 H 1.09002 * 109.46365 * 0.02562 * 6 5 4 8 8 C 1.52991 * 109.47237 * 239.99926 * 6 5 4 9 9 C 1.53000 * 109.47102 * 119.99673 * 6 5 4 10 10 C 1.50698 * 109.46931 * 185.00107 * 9 6 5 11 11 H 1.07996 * 120.00268 * 0.02562 * 10 9 6 12 12 C 1.37881 * 119.99593 * 180.02562 * 10 9 6 13 13 N 1.31509 * 120.00282 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99716 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46949 * 90.00042 * 14 12 10 16 16 H 1.48494 * 109.47069 * 210.00006 * 14 12 10 17 17 H 1.48506 * 109.47001 * 330.00593 * 14 12 10 18 18 N 1.30294 * 107.30751 * 179.97438 * 5 4 3 19 19 N 1.28525 * 110.05312 * 359.72913 * 18 5 4 20 20 C 1.31218 * 109.86095 * 0.45057 * 19 18 5 21 21 N 1.38576 * 126.47576 * 179.82199 * 20 19 18 22 22 C 1.48015 * 111.00032 * 35.62724 * 21 20 19 23 23 C 1.54314 * 107.02454 * 214.42772 * 22 21 20 24 24 C 1.53197 * 104.76585 * 2.06388 * 23 22 21 25 25 C 1.53148 * 111.86315 * 141.57008 * 24 23 22 26 26 C 1.54814 * 103.54908 * 121.47059 * 25 24 23 27 27 O 1.44548 * 104.87348 * 23.72561 * 26 25 24 28 28 C 1.44760 * 105.51666 * 320.39180 * 27 26 25 29 29 C 1.48798 * 111.00073 * 277.97463 * 21 20 19 30 30 H 1.07999 * 120.00739 * 0.02562 * 1 2 3 31 31 H 1.08008 * 119.99648 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.00109 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.47485 * 5.17174 * 3 2 1 34 34 H 1.09009 * 109.46928 * 245.17217 * 3 2 1 35 35 H 1.09007 * 109.46954 * 59.99817 * 8 6 5 36 36 H 1.08995 * 109.47341 * 179.97438 * 8 6 5 37 37 H 1.09001 * 109.47298 * 300.00155 * 8 6 5 38 38 H 1.08994 * 109.47428 * 305.00362 * 9 6 5 39 39 H 1.08999 * 109.47076 * 65.00341 * 9 6 5 40 40 H 0.97001 * 120.00067 * 180.02562 * 13 12 10 41 41 H 1.08998 * 109.92513 * 95.08174 * 22 21 20 42 42 H 1.09004 * 109.92324 * 333.76786 * 22 21 20 43 43 H 1.08997 * 110.38239 * 120.88955 * 23 22 21 44 44 H 1.09005 * 110.38042 * 243.13164 * 23 22 21 45 45 H 1.09000 * 110.60283 * 239.98907 * 25 24 23 46 46 H 1.08998 * 110.60467 * 2.79475 * 25 24 23 47 47 H 1.08998 * 110.36230 * 142.57111 * 26 25 24 48 48 H 1.09000 * 110.36352 * 264.87781 * 26 25 24 49 49 H 1.09000 * 110.43254 * 280.42253 * 28 27 26 50 50 H 1.09001 * 110.43231 * 157.92946 * 28 27 26 51 51 H 1.08995 * 110.68666 * 39.88551 * 29 21 20 52 52 H 1.09004 * 110.82952 * 276.77914 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9966 1.3303 1.1290 5 6 2.7461 1.7758 2.3973 6 6 1.4441 2.3397 2.9051 7 1 0.7104 2.3424 2.0989 8 6 1.6659 3.7708 3.3984 9 6 0.9300 1.4764 4.0590 10 6 -0.4297 1.9663 4.4857 11 1 -0.8822 2.8088 3.9839 12 6 -1.0961 1.3389 5.5169 13 7 -0.5450 0.3133 6.1283 14 14 -2.7814 1.9466 6.0464 15 1 -3.8297 1.2384 5.2688 16 1 -2.9722 1.6775 7.4942 17 1 -2.8818 3.4071 5.7968 18 7 3.8415 1.6215 3.0857 19 7 4.7583 1.1075 2.3459 20 6 4.2960 0.9136 1.1333 21 7 4.9936 0.3806 0.0611 22 6 5.9296 -0.6749 0.5092 23 6 7.1732 -0.5919 -0.4007 24 6 6.8967 0.5920 -1.3329 25 6 8.1611 1.4131 -1.6024 26 6 8.3106 1.3540 -3.1421 27 8 6.9778 1.0876 -3.6343 28 6 6.4069 0.1322 -2.7088 29 6 5.8306 1.4185 -0.5994 30 1 -0.5401 0.9352 -0.0004 31 1 -0.5400 -0.9354 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1315 0.0926 34 1 2.6187 1.4041 -0.9328 35 1 2.0322 4.3858 2.5762 36 1 0.7241 4.1788 3.7652 37 1 2.3995 3.7677 4.2046 38 1 0.8564 0.4393 3.7320 39 1 1.6208 1.5443 4.8993 40 1 -1.0140 -0.1283 6.8535 41 1 5.4609 -1.6538 0.4092 42 1 6.2160 -0.5014 1.5465 43 1 8.0672 -0.4057 0.1944 44 1 7.2853 -1.5114 -0.9752 45 1 8.0283 2.4423 -1.2690 46 1 9.0237 0.9608 -1.1131 47 1 8.6725 2.3082 -3.5249 48 1 8.9879 0.5488 -3.4268 49 1 6.7706 -0.8721 -2.9261 50 1 5.3183 0.1618 -2.7546 51 1 6.2918 2.0706 0.1423 52 1 5.2400 2.0001 -1.3072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121601893.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:06 Heat of formation + Delta-G solvation = 41.135606 kcal Electronic energy + Delta-G solvation = -31567.767921 eV Core-core repulsion = 27568.423576 eV Total energy + Delta-G solvation = -3999.344344 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.07593 -41.47517 -38.72211 -37.36432 -36.80891 -34.50043 -34.05844 -33.48648 -31.24896 -30.19461 -29.71317 -28.79125 -27.82160 -26.36763 -25.85737 -24.13938 -23.66072 -23.25339 -22.02319 -20.96615 -20.61295 -20.43867 -18.69860 -18.28565 -17.51750 -17.27538 -17.10612 -16.60600 -16.40672 -16.18703 -15.89148 -15.75075 -15.45823 -15.07973 -14.99686 -14.62450 -14.41791 -14.15731 -14.06875 -13.73706 -13.46272 -13.32720 -13.12571 -12.93872 -12.82366 -12.72249 -12.67947 -12.55148 -12.45744 -12.41398 -12.26308 -12.03331 -11.97585 -11.66191 -11.60902 -11.47740 -11.39741 -11.17938 -11.09328 -10.68134 -10.54048 -10.51881 -10.29853 -9.63528 -8.15449 -6.26988 0.63911 0.95103 1.43682 1.45549 1.55713 1.57500 1.76131 2.43958 2.67481 3.03053 3.18770 3.22575 3.41637 3.47030 3.66738 3.69381 3.81416 3.90784 4.00185 4.06866 4.10398 4.15587 4.21069 4.31418 4.39109 4.41007 4.49008 4.50309 4.59507 4.62352 4.71553 4.74675 4.82422 4.87217 4.90649 4.93350 4.94396 4.99950 5.02997 5.08052 5.09083 5.14031 5.15745 5.34870 5.42233 5.46441 5.50842 5.56351 5.66358 5.69331 5.83986 5.87833 6.16184 6.21473 6.88542 7.42095 7.70951 8.97114 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.002509 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.104691 B =11158.581179 C =11517.987345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.195 4.195 3 C 0.140 3.860 4 N -0.462 5.462 5 C 0.208 3.792 6 C 0.010 3.990 7 H 0.093 0.907 8 C -0.119 4.119 9 C 0.054 3.946 10 C -0.524 4.524 11 H 0.077 0.923 12 C -0.002 4.002 13 N -0.937 5.937 14 Si 0.965 3.035 15 H -0.271 1.271 16 H -0.290 1.290 17 H -0.256 1.256 18 N -0.329 5.329 19 N -0.351 5.351 20 C 0.335 3.665 21 N -0.434 5.434 22 C 0.040 3.960 23 C -0.103 4.103 24 C -0.087 4.087 25 C -0.140 4.140 26 C 0.043 3.957 27 O -0.401 6.401 28 C 0.066 3.934 29 C 0.062 3.938 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.124 0.876 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.040 0.960 38 H -0.023 1.023 39 H -0.013 1.013 40 H 0.261 0.739 41 H 0.089 0.911 42 H 0.050 0.950 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.074 0.926 46 H 0.100 0.900 47 H 0.099 0.901 48 H 0.075 0.925 49 H 0.079 0.921 50 H 0.093 0.907 51 H 0.045 0.955 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.199 0.694 -23.068 27.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.214 4.214 3 C 0.019 3.981 4 N -0.154 5.154 5 C -0.061 4.061 6 C -0.011 4.011 7 H 0.112 0.888 8 C -0.177 4.177 9 C 0.016 3.984 10 C -0.562 4.562 11 H 0.095 0.905 12 C -0.199 4.199 13 N -0.578 5.578 14 Si 0.789 3.211 15 H -0.197 1.197 16 H -0.216 1.216 17 H -0.180 1.180 18 N -0.167 5.167 19 N -0.194 5.194 20 C -0.022 4.022 21 N -0.160 5.160 22 C -0.087 4.087 23 C -0.141 4.141 24 C -0.088 4.088 25 C -0.178 4.178 26 C -0.033 4.033 27 O -0.321 6.321 28 C -0.011 4.011 29 C -0.064 4.064 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.142 0.858 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.059 0.941 38 H -0.005 1.005 39 H 0.006 0.994 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.069 0.931 43 H 0.106 0.894 44 H 0.122 0.878 45 H 0.093 0.907 46 H 0.118 0.882 47 H 0.117 0.883 48 H 0.093 0.907 49 H 0.097 0.903 50 H 0.111 0.889 51 H 0.064 0.936 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.652 0.492 -22.340 26.721 hybrid contribution -1.085 -0.137 0.780 1.343 sum 13.568 0.355 -21.559 25.476 Atomic orbital electron populations 1.24162 0.95367 1.03644 0.95291 1.22913 0.96483 0.97562 1.04404 1.21193 0.91611 0.97983 0.87269 1.46509 1.10383 1.47167 1.11298 1.25395 0.99063 1.00380 0.81268 1.19748 0.86371 0.96332 0.98659 0.88847 1.21603 1.02430 0.93206 1.00470 1.18799 0.95268 0.92668 0.91639 1.21539 1.02178 1.15462 1.17058 0.90503 1.26000 1.02301 0.95057 0.96554 1.70156 1.40124 1.23172 1.24311 0.85446 0.79138 0.79450 0.77018 1.19694 1.21639 1.17977 1.73935 0.98682 1.17896 1.26209 1.74364 1.24543 1.19030 1.01474 1.22772 0.84901 1.01352 0.93223 1.61777 1.25593 1.10082 1.18593 1.23079 0.92283 0.94159 0.99210 1.22392 0.96425 0.98795 0.96509 1.21835 0.94954 0.95771 0.96282 1.22896 0.96834 1.00873 0.97189 1.23630 0.84665 1.02527 0.92509 1.89176 1.29165 1.63208 1.50518 1.23357 0.99679 0.92844 0.85174 1.23259 0.93513 0.92863 0.96798 0.86751 0.87123 0.87745 0.87058 0.85779 0.91882 0.90589 0.94111 1.00452 0.99418 0.93037 0.89267 0.93117 0.89351 0.87803 0.90695 0.88182 0.88305 0.90692 0.90266 0.88873 0.93641 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 14.32 67.78 0.97 -2.47 16 2 C -0.19 -4.91 9.85 25.65 0.25 -4.65 16 3 C 0.14 3.39 6.31 85.63 0.54 3.93 16 4 N -0.46 -15.34 2.79 -518.90 -1.45 -16.79 16 5 C 0.21 8.52 6.58 137.64 0.91 9.42 16 6 C 0.01 0.41 2.70 -11.54 -0.03 0.38 16 7 H 0.09 3.41 6.96 -2.39 -0.02 3.39 16 8 C -0.12 -4.46 8.98 71.98 0.65 -3.82 16 9 C 0.05 2.92 4.43 29.85 0.13 3.06 16 10 C -0.52 -28.53 8.41 25.60 0.22 -28.31 16 11 H 0.08 3.82 7.06 -2.91 -0.02 3.79 16 12 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 13 N -0.94 -58.02 13.29 21.45 0.28 -57.74 16 14 Si 0.96 43.32 29.54 68.60 2.03 45.34 16 15 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 16 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 17 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 18 N -0.33 -15.21 12.18 -49.53 -0.60 -15.81 16 19 N -0.35 -14.48 11.05 -58.01 -0.64 -15.12 16 20 C 0.33 11.20 6.70 260.11 1.74 12.94 16 21 N -0.43 -10.64 5.31 -694.59 -3.69 -14.33 16 22 C 0.04 0.87 6.66 86.53 0.58 1.45 16 23 C -0.10 -1.40 6.10 31.11 0.19 -1.21 16 24 C -0.09 -1.24 0.86 -51.84 -0.04 -1.28 16 25 C -0.14 -1.57 6.38 31.26 0.20 -1.37 16 26 C 0.04 0.48 7.67 72.60 0.56 1.03 16 27 O -0.40 -6.84 11.66 -148.98 -1.74 -8.58 16 28 C 0.07 0.92 6.76 72.02 0.49 1.41 16 29 C 0.06 1.26 5.17 86.12 0.45 1.70 16 30 H 0.11 2.39 7.84 -2.91 -0.02 2.37 16 31 H 0.11 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.10 2.79 8.06 -2.91 -0.02 2.77 16 33 H 0.11 2.36 6.92 -2.39 -0.02 2.35 16 34 H 0.12 2.37 8.14 -2.38 -0.02 2.35 16 35 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.08 2.81 6.95 -2.39 -0.02 2.79 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 16 39 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 40 H 0.26 15.26 8.31 -92.71 -0.77 14.48 16 41 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.05 1.41 6.90 -2.38 -0.02 1.39 16 43 H 0.09 1.08 7.53 -2.39 -0.02 1.06 16 44 H 0.10 0.97 7.46 -2.38 -0.02 0.95 16 45 H 0.07 0.94 7.68 -2.39 -0.02 0.92 16 46 H 0.10 0.82 7.44 -2.39 -0.02 0.80 16 47 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.08 0.87 7.51 -2.39 -0.02 0.85 16 50 H 0.09 1.42 7.85 -2.39 -0.02 1.40 16 51 H 0.05 1.09 7.79 -2.39 -0.02 1.07 16 52 H 0.09 1.79 8.00 -2.39 -0.02 1.77 16 Total: -1.00 -75.56 413.91 3.33 -72.23 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.89 Total: 18.22 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 8.24 Total: -7.44 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -6.10 Total: -119.79 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -1.74 Total: -8.58 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -75.56 3.33 -72.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121601893.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.369 kcal (2) G-P(sol) polarization free energy of solvation -75.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds