Wall clock time and date at job start Wed Apr 1 2020 04:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99762 * 2 1 4 4 N 1.46497 * 109.47450 * 125.00346 * 3 2 1 5 5 C 1.36741 * 127.13974 * 84.92394 * 4 3 2 6 6 C 1.50698 * 126.34442 * 359.97438 * 5 4 3 7 7 H 1.09003 * 109.47536 * 359.97438 * 6 5 4 8 8 C 1.52999 * 109.47181 * 119.97745 * 6 5 4 9 9 C 1.52997 * 109.47150 * 239.97693 * 6 5 4 10 10 C 1.50709 * 109.47400 * 174.99957 * 9 6 5 11 11 H 1.08004 * 119.99587 * 0.02562 * 10 9 6 12 12 C 1.37872 * 120.00154 * 180.02562 * 10 9 6 13 13 N 1.31513 * 119.99686 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00237 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.46941 * 90.00076 * 14 12 10 16 16 H 1.48496 * 109.47301 * 210.00502 * 14 12 10 17 17 H 1.48512 * 109.46911 * 330.00379 * 14 12 10 18 18 N 1.30291 * 107.30791 * 179.97438 * 5 4 3 19 19 N 1.28535 * 110.05205 * 359.97438 * 18 5 4 20 20 C 1.31213 * 109.85746 * 0.02562 * 19 18 5 21 21 N 1.38588 * 126.46944 * 180.02562 * 20 19 18 22 22 C 1.48017 * 111.00009 * 36.33846 * 21 20 19 23 23 C 1.54315 * 107.02802 * 214.42374 * 22 21 20 24 24 C 1.53203 * 104.75984 * 2.07784 * 23 22 21 25 25 C 1.53154 * 111.83498 * 259.68391 * 24 23 22 26 26 C 1.54824 * 103.54795 * 237.76593 * 25 24 23 27 27 O 1.44550 * 104.86254 * 23.75154 * 26 25 24 28 28 C 1.44755 * 105.52463 * 320.38440 * 27 26 25 29 29 C 1.48805 * 110.99427 * 278.69208 * 21 20 19 30 30 H 1.07999 * 119.99638 * 180.02562 * 1 2 3 31 31 H 1.07993 * 120.00005 * 359.97438 * 1 2 3 32 32 H 1.08001 * 120.00276 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.47549 * 4.99903 * 3 2 1 34 34 H 1.09004 * 109.47198 * 245.00224 * 3 2 1 35 35 H 1.08997 * 109.47000 * 300.00256 * 8 6 5 36 36 H 1.09003 * 109.46748 * 59.99686 * 8 6 5 37 37 H 1.08998 * 109.47639 * 179.97438 * 8 6 5 38 38 H 1.09001 * 109.47453 * 295.00353 * 9 6 5 39 39 H 1.09004 * 109.47425 * 55.00079 * 9 6 5 40 40 H 0.97003 * 119.99712 * 179.97438 * 13 12 10 41 41 H 1.09003 * 109.92390 * 333.76771 * 22 21 20 42 42 H 1.09003 * 109.92266 * 95.08563 * 22 21 20 43 43 H 1.08994 * 110.38018 * 120.89551 * 23 22 21 44 44 H 1.08999 * 110.38250 * 243.25660 * 23 22 21 45 45 H 1.08997 * 110.60788 * 356.27980 * 25 24 23 46 46 H 1.09008 * 110.60735 * 119.09728 * 25 24 23 47 47 H 1.08998 * 110.35831 * 142.60023 * 26 25 24 48 48 H 1.09001 * 110.36031 * 264.79514 * 26 25 24 49 49 H 1.09005 * 110.42865 * 280.41237 * 28 27 26 50 50 H 1.09001 * 110.43388 * 157.91797 * 28 27 26 51 51 H 1.08999 * 110.68096 * 276.70308 * 29 21 20 52 52 H 1.08988 * 110.69062 * 39.89352 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3320 1.1313 5 6 4.2588 0.8145 1.1724 6 6 4.9684 0.1002 0.0511 7 1 4.3150 0.0520 -0.8200 8 6 6.2456 0.8610 -0.3107 9 6 5.3288 -1.3182 0.4973 10 6 5.9274 -2.0727 -0.6618 11 1 6.0399 -1.5887 -1.6208 12 6 6.3313 -3.3807 -0.4981 13 7 6.8541 -4.0389 -1.5096 14 14 6.1373 -4.2176 1.1606 15 1 4.8099 -4.8799 1.2286 16 1 7.2069 -5.2336 1.3305 17 1 6.2410 -3.2043 2.2414 18 7 4.7370 1.0535 2.3606 19 7 3.8670 1.6824 3.0675 20 6 2.7780 1.8795 2.3624 21 7 1.6266 2.5230 2.7876 22 6 1.9520 3.6572 3.6812 23 6 0.8250 3.7424 4.7319 24 6 -0.1041 2.5693 4.4037 25 6 -1.3382 3.0225 3.6181 26 6 -2.5214 2.5624 4.5042 27 8 -1.9706 2.4652 5.8371 28 6 -0.6480 1.9012 5.6696 29 6 0.7666 1.6062 3.5840 30 1 -0.5399 -0.9353 0.0004 31 1 -0.5400 0.9352 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3585 2.1317 0.0895 34 1 2.6212 1.4027 -0.9314 35 1 5.9888 1.8715 -0.6286 36 1 6.8989 0.9091 0.5605 37 1 6.7591 0.3442 -1.1214 38 1 6.0516 -1.2703 1.3118 39 1 4.4297 -1.8310 0.8392 40 1 7.1387 -4.9590 -1.3943 41 1 2.9073 3.4789 4.1749 42 1 1.9946 4.5824 3.1065 43 1 1.2336 3.6334 5.7365 44 1 0.2902 4.6876 4.6392 45 1 -1.3434 4.1065 3.5038 46 1 -1.3731 2.5349 2.6438 47 1 -3.3238 3.2997 4.4782 48 1 -2.8888 1.5914 4.1721 49 1 -0.7092 0.8214 5.5336 50 1 -0.0199 2.1427 6.5271 51 1 0.1491 0.9916 2.9289 52 1 1.3732 0.9822 4.2402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121601895.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:18 Heat of formation + Delta-G solvation = 44.257974 kcal Electronic energy + Delta-G solvation = -31799.398007 eV Core-core repulsion = 27800.189059 eV Total energy + Delta-G solvation = -3999.208948 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -44.10160 -41.47796 -38.76432 -37.39522 -36.88006 -34.50337 -34.05825 -33.48360 -31.27478 -30.25401 -30.12254 -29.15062 -27.80391 -26.20985 -25.69835 -24.13382 -23.59145 -23.19595 -21.84438 -21.13542 -20.63265 -20.33490 -19.11518 -18.41202 -17.48564 -17.31787 -17.13236 -16.46034 -16.38803 -16.19213 -16.06674 -15.72024 -15.50062 -15.18116 -15.00305 -14.71390 -14.64590 -14.48854 -13.91569 -13.65408 -13.55142 -13.41892 -13.17656 -12.97737 -12.92453 -12.88481 -12.77586 -12.50439 -12.44301 -12.23872 -12.06873 -12.04051 -11.84746 -11.82703 -11.59242 -11.56871 -11.52265 -11.26137 -11.10291 -10.77809 -10.67021 -10.56502 -10.33452 -9.67357 -8.30024 -6.31375 0.62793 0.92275 1.28250 1.33652 1.45528 1.52911 1.72627 2.32966 2.66291 2.93457 3.05441 3.31207 3.40057 3.48303 3.58397 3.61572 3.81668 3.91485 4.05425 4.09041 4.11960 4.17335 4.20438 4.29976 4.31359 4.40569 4.45244 4.51345 4.55251 4.57049 4.61793 4.71992 4.80659 4.87416 4.89082 4.90193 4.92818 4.97691 5.01881 5.08224 5.08930 5.16282 5.16340 5.19249 5.30834 5.39636 5.45230 5.51701 5.57851 5.63678 5.68369 5.83374 6.15479 6.25977 6.74262 7.32479 7.68119 8.85434 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014885 B = 0.002859 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.698789 B = 9791.707836 C = 9984.550215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.207 4.207 3 C 0.137 3.863 4 N -0.459 5.459 5 C 0.203 3.797 6 C 0.016 3.984 7 H 0.092 0.908 8 C -0.121 4.121 9 C 0.012 3.988 10 C -0.512 4.512 11 H 0.056 0.944 12 C 0.019 3.981 13 N -0.941 5.941 14 Si 0.927 3.073 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.264 1.264 18 N -0.324 5.324 19 N -0.350 5.350 20 C 0.338 3.662 21 N -0.428 5.428 22 C 0.043 3.957 23 C -0.105 4.105 24 C -0.087 4.087 25 C -0.127 4.127 26 C 0.038 3.962 27 O -0.396 6.396 28 C 0.058 3.942 29 C 0.062 3.938 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.090 0.910 33 H 0.130 0.870 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.013 0.987 39 H 0.003 0.997 40 H 0.266 0.734 41 H 0.052 0.948 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.100 0.900 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.104 0.896 48 H 0.065 0.935 49 H 0.063 0.937 50 H 0.098 0.902 51 H 0.098 0.902 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.549 17.762 8.330 29.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.226 4.226 3 C 0.017 3.983 4 N -0.150 5.150 5 C -0.065 4.065 6 C -0.005 4.005 7 H 0.110 0.890 8 C -0.179 4.179 9 C -0.027 4.027 10 C -0.550 4.550 11 H 0.074 0.926 12 C -0.178 4.178 13 N -0.582 5.582 14 Si 0.753 3.247 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.188 1.188 18 N -0.163 5.163 19 N -0.193 5.193 20 C -0.020 4.020 21 N -0.154 5.154 22 C -0.084 4.084 23 C -0.143 4.143 24 C -0.088 4.088 25 C -0.165 4.165 26 C -0.038 4.038 27 O -0.315 6.315 28 C -0.019 4.019 29 C -0.065 4.065 30 H 0.130 0.870 31 H 0.146 0.854 32 H 0.108 0.892 33 H 0.148 0.852 34 H 0.127 0.873 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.032 0.968 39 H 0.021 0.979 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.115 0.885 43 H 0.097 0.903 44 H 0.118 0.882 45 H 0.108 0.892 46 H 0.110 0.890 47 H 0.123 0.877 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.116 0.884 51 H 0.116 0.884 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -21.892 17.892 9.162 29.721 hybrid contribution 0.323 -1.517 -0.097 1.554 sum -21.569 16.376 9.065 28.558 Atomic orbital electron populations 1.24155 0.94377 1.03925 0.94634 1.23023 0.97346 0.97180 1.05053 1.21234 0.91756 0.98472 0.86886 1.46497 1.13203 1.42766 1.12555 1.25237 0.83761 0.99829 0.97716 1.19528 0.96217 0.93669 0.91107 0.88963 1.21601 0.95728 0.98769 1.01788 1.19392 0.95488 0.91663 0.96122 1.21253 1.39671 0.96933 0.97188 0.92564 1.25663 0.94639 0.98209 0.99333 1.70005 1.43803 1.11655 1.32724 0.86000 0.78356 0.78763 0.81622 1.19381 1.20613 1.18830 1.73935 1.24486 1.15630 1.02266 1.74399 1.00742 1.18063 1.26133 1.22765 0.94929 0.99830 0.84434 1.61752 1.08342 1.07296 1.37964 1.23078 0.99117 0.92654 0.93537 1.22406 0.94615 0.98990 0.98246 1.21821 0.96178 0.95360 0.95424 1.22837 0.91394 1.03114 0.99143 1.23712 0.96895 1.01805 0.81402 1.89172 1.29794 1.84211 1.28307 1.23344 0.84090 0.97425 0.97072 1.23221 0.94161 0.94268 0.94867 0.87023 0.85446 0.89210 0.85211 0.87286 0.91886 0.93379 0.91487 0.96847 0.97855 0.92475 0.92970 0.88525 0.90303 0.88168 0.89161 0.88987 0.87739 0.91665 0.91861 0.88414 0.88350 0.94279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 14.32 67.78 0.97 -0.99 16 2 C -0.21 -4.46 9.85 25.65 0.25 -4.21 16 3 C 0.14 2.91 6.23 85.63 0.53 3.44 16 4 N -0.46 -13.68 2.79 -518.91 -1.45 -15.13 16 5 C 0.20 7.61 6.58 137.64 0.91 8.51 16 6 C 0.02 0.62 2.71 -11.54 -0.03 0.59 16 7 H 0.09 3.31 7.07 -2.39 -0.02 3.30 16 8 C -0.12 -4.48 8.99 71.98 0.65 -3.84 16 9 C 0.01 0.57 3.50 29.85 0.10 0.67 16 10 C -0.51 -28.35 8.96 25.60 0.23 -28.12 16 11 H 0.06 3.28 7.30 -2.91 -0.02 3.26 16 12 C 0.02 1.12 5.47 84.65 0.46 1.58 16 13 N -0.94 -57.62 13.96 21.45 0.30 -57.32 16 14 Si 0.93 45.61 27.47 68.60 1.88 47.49 16 15 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 16 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 17 H -0.26 -12.98 6.54 99.48 0.65 -12.33 16 18 N -0.32 -13.65 12.18 -49.54 -0.60 -14.25 16 19 N -0.35 -13.17 11.07 -58.00 -0.64 -13.81 16 20 C 0.34 10.11 6.69 260.11 1.74 11.85 16 21 N -0.43 -9.04 5.28 -694.57 -3.67 -12.71 16 22 C 0.04 0.81 6.66 86.53 0.58 1.38 16 23 C -0.10 -1.39 6.15 31.11 0.19 -1.20 16 24 C -0.09 -1.16 0.86 -51.84 -0.04 -1.20 16 25 C -0.13 -1.23 6.41 31.27 0.20 -1.02 16 26 C 0.04 0.40 7.67 72.60 0.56 0.96 16 27 O -0.40 -6.61 11.66 -148.98 -1.74 -8.34 16 28 C 0.06 0.85 6.80 72.02 0.49 1.34 16 29 C 0.06 1.14 5.26 86.12 0.45 1.60 16 30 H 0.11 1.50 8.06 -2.91 -0.02 1.48 16 31 H 0.13 1.18 7.84 -2.91 -0.02 1.16 16 32 H 0.09 2.54 8.06 -2.91 -0.02 2.51 16 33 H 0.13 2.03 7.76 -2.39 -0.02 2.01 16 34 H 0.11 2.17 7.46 -2.39 -0.02 2.15 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 2.64 6.95 -2.39 -0.02 2.63 16 38 H 0.01 0.68 7.20 -2.39 -0.02 0.67 16 39 H 0.00 0.15 7.57 -2.38 -0.02 0.13 16 40 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 41 H 0.05 1.27 6.91 -2.39 -0.02 1.25 16 42 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.08 1.06 7.45 -2.39 -0.02 1.04 16 44 H 0.10 0.99 7.39 -2.39 -0.02 0.97 16 45 H 0.09 0.73 7.34 -2.39 -0.02 0.72 16 46 H 0.09 0.77 7.54 -2.38 -0.02 0.75 16 47 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.06 0.92 7.92 -2.38 -0.02 0.90 16 50 H 0.10 1.36 7.44 -2.39 -0.02 1.35 16 51 H 0.10 1.64 7.75 -2.39 -0.02 1.63 16 52 H 0.04 0.92 7.91 -2.39 -0.02 0.90 16 Total: -1.00 -72.84 410.21 3.16 -69.69 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.84 Total: 13.06 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 8.24 Total: -8.67 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -6.07 Total: -113.22 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -1.74 Total: -8.34 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.88 Total: 47.49 kcal Total: -72.84 3.16 -69.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121601895.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.943 kcal (2) G-P(sol) polarization free energy of solvation -72.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds