Wall clock time and date at job start Wed Apr 1 2020 04:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50698 * 119.99666 * 2 1 4 4 N 1.46497 * 109.47345 * 125.17577 * 3 2 1 5 5 C 1.36742 * 127.13530 * 270.83382 * 4 3 2 6 6 C 1.50704 * 126.34460 * 359.96179 * 5 4 3 7 7 H 1.08998 * 109.46976 * 0.28838 * 6 5 4 8 8 C 1.53001 * 109.47200 * 120.28948 * 6 5 4 9 9 C 1.53005 * 109.46974 * 240.28883 * 6 5 4 10 10 C 1.50700 * 109.46765 * 175.00070 * 9 6 5 11 11 H 1.07998 * 119.99990 * 359.97438 * 10 9 6 12 12 C 1.37878 * 119.99787 * 179.97438 * 10 9 6 13 13 N 1.31512 * 120.00158 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99964 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.46884 * 89.99793 * 14 12 10 16 16 H 1.48495 * 109.47193 * 209.99880 * 14 12 10 17 17 H 1.48507 * 109.47055 * 330.00207 * 14 12 10 18 18 N 1.30285 * 107.30662 * 180.22632 * 5 4 3 19 19 N 1.28531 * 110.05771 * 359.76921 * 18 5 4 20 20 C 1.31223 * 109.85699 * 0.02562 * 19 18 5 21 21 N 1.38582 * 126.47423 * 179.97438 * 20 19 18 22 22 C 1.48017 * 110.99815 * 35.92374 * 21 20 19 23 23 C 1.54317 * 107.19804 * 214.52878 * 22 21 20 24 24 C 1.53197 * 104.76140 * 1.97001 * 23 22 21 25 25 C 1.53147 * 111.86443 * 141.56854 * 24 23 22 26 26 C 1.54824 * 103.55094 * 121.46627 * 25 24 23 27 27 O 1.44552 * 104.86581 * 23.72541 * 26 25 24 28 28 C 1.44756 * 105.52170 * 320.39062 * 27 26 25 29 29 C 1.49087 * 111.18540 * 278.33556 * 21 20 19 30 30 H 1.08002 * 119.99493 * 0.02562 * 1 2 3 31 31 H 1.07994 * 119.99695 * 180.02562 * 1 2 3 32 32 H 1.07991 * 119.99948 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47750 * 5.16868 * 3 2 1 34 34 H 1.09008 * 109.46474 * 245.16640 * 3 2 1 35 35 H 1.09001 * 109.47254 * 59.99521 * 8 6 5 36 36 H 1.08995 * 109.47072 * 180.02562 * 8 6 5 37 37 H 1.09001 * 109.46619 * 299.99840 * 8 6 5 38 38 H 1.09001 * 109.46408 * 294.99794 * 9 6 5 39 39 H 1.09002 * 109.46959 * 55.00054 * 9 6 5 40 40 H 0.97000 * 120.00100 * 179.97438 * 13 12 10 41 41 H 1.09000 * 109.92033 * 95.08837 * 22 21 20 42 42 H 1.08996 * 109.92668 * 333.97627 * 22 21 20 43 43 H 1.09002 * 110.37790 * 120.78534 * 23 22 21 44 44 H 1.09001 * 110.38032 * 243.03717 * 23 22 21 45 45 H 1.08999 * 110.60423 * 239.98148 * 25 24 23 46 46 H 1.08997 * 110.60600 * 2.79545 * 25 24 23 47 47 H 1.08996 * 110.36173 * 142.56973 * 26 25 24 48 48 H 1.09001 * 110.35790 * 264.88227 * 26 25 24 49 49 H 1.08999 * 110.43368 * 280.42834 * 28 27 26 50 50 H 1.08998 * 110.43091 * 157.93684 * 28 27 26 51 51 H 1.08990 * 110.53639 * 39.67527 * 29 21 20 52 52 H 1.09000 * 110.86826 * 276.63594 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9967 1.3303 1.1290 5 6 2.7462 1.7754 2.3974 6 6 1.4443 2.3400 2.9049 7 1 0.7096 2.3393 2.0998 8 6 0.9328 1.4808 4.0630 9 6 1.6656 3.7734 3.3922 10 6 0.3432 4.3801 3.7850 11 1 -0.5643 3.8014 3.6956 12 6 0.2919 5.6740 4.2586 13 7 -0.8622 6.2036 4.6009 14 14 1.8616 6.6747 4.4139 15 1 2.1062 7.4114 3.1479 16 1 1.7228 7.6429 5.5312 17 1 3.0036 5.7651 4.6859 18 7 3.8432 1.6263 3.0842 19 7 4.7614 1.1166 2.3432 20 6 4.2956 0.9121 1.1336 21 7 4.9927 0.3771 0.0620 22 6 5.9322 -0.6744 0.5121 23 6 7.1769 -0.5934 -0.3964 24 6 6.8992 0.5851 -1.3350 25 6 8.1620 1.4076 -1.6069 26 6 8.3139 1.3409 -3.1462 27 8 6.9824 1.0691 -3.6388 28 6 6.4123 0.1171 -2.7092 29 6 5.8301 1.4131 -0.6073 30 1 -0.5399 0.9354 -0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8500 -0.9352 0.0004 33 1 1.3589 2.1315 0.0926 34 1 2.6189 1.4039 -0.9327 35 1 1.6676 1.4815 4.8681 36 1 -0.0090 1.8889 4.4297 37 1 0.7752 0.4597 3.7157 38 1 2.3320 3.7650 4.2547 39 1 2.1131 4.3639 2.5928 40 1 -0.8982 7.1138 4.9344 41 1 5.4657 -1.6549 0.4165 42 1 6.2173 -0.4985 1.5493 43 1 8.0696 -0.4021 0.1991 44 1 7.2918 -1.5156 -0.9660 45 1 8.0265 2.4382 -1.2790 46 1 9.0250 0.9598 -1.1141 47 1 8.6742 2.2940 -3.5334 48 1 8.9934 0.5357 -3.4257 49 1 6.7785 -0.8875 -2.9208 50 1 5.3237 0.1440 -2.7568 51 1 6.2888 2.0699 0.1317 52 1 5.2392 1.9897 -1.3190 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121601896.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:26 Heat of formation + Delta-G solvation = 62.238278 kcal Electronic energy + Delta-G solvation = -31632.520033 eV Core-core repulsion = 27634.090769 eV Total energy + Delta-G solvation = -3998.429264 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.78177 -40.75904 -37.90655 -36.19655 -35.32489 -33.39000 -32.63550 -32.12432 -30.51042 -29.46216 -28.55199 -27.46075 -26.79453 -25.56577 -24.02463 -23.13738 -22.86183 -21.59973 -20.95662 -20.06182 -19.74880 -19.08617 -17.42315 -16.94653 -16.57164 -16.43752 -16.11809 -15.69901 -15.49734 -15.07020 -14.73393 -14.39823 -14.30095 -13.97474 -13.70532 -13.55248 -13.46912 -13.27972 -12.73266 -12.67790 -12.44761 -12.30434 -12.06876 -11.99920 -11.89518 -11.64806 -11.49513 -11.28729 -11.20371 -11.06535 -11.02196 -10.88491 -10.79596 -10.42474 -10.17299 -10.08152 -10.06413 -9.87603 -9.75487 -9.66822 -9.19818 -9.13647 -8.55978 -8.37120 -6.07405 -4.05980 1.80592 1.97759 2.59557 3.13304 3.31287 3.39805 3.48419 3.56588 3.66181 3.97287 4.09391 4.34659 4.45191 4.57654 4.60395 4.68035 4.70616 4.76279 4.81361 4.94169 5.03389 5.04481 5.15478 5.24881 5.26831 5.33750 5.35300 5.35979 5.41071 5.43468 5.50483 5.54003 5.60002 5.64803 5.69328 5.70558 5.86279 5.93466 5.99923 6.13528 6.16489 6.29601 6.38717 6.43618 6.49187 6.62667 6.69411 6.73601 6.98743 7.14885 7.31615 7.38984 7.73102 8.46776 8.95033 9.05452 9.55160 11.05176 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012566 B = 0.002968 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.691743 B = 9430.737761 C =10280.689606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.177 4.177 3 C 0.140 3.860 4 N -0.464 5.464 5 C 0.218 3.782 6 C 0.009 3.991 7 H 0.078 0.922 8 C -0.126 4.126 9 C 0.001 3.999 10 C -0.518 4.518 11 H 0.077 0.923 12 C 0.072 3.928 13 N -0.901 5.901 14 Si 0.872 3.128 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.262 1.262 18 N -0.288 5.288 19 N -0.316 5.316 20 C 0.317 3.683 21 N -0.442 5.442 22 C 0.046 3.954 23 C -0.115 4.115 24 C -0.095 4.095 25 C -0.143 4.143 26 C 0.045 3.955 27 O -0.377 6.377 28 C 0.064 3.936 29 C 0.060 3.940 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.031 0.969 39 H 0.008 0.992 40 H 0.264 0.736 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.091 0.909 48 H 0.059 0.941 49 H 0.063 0.937 50 H 0.099 0.901 51 H 0.063 0.937 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.467 -15.648 -16.457 26.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.195 4.195 3 C 0.018 3.982 4 N -0.156 5.156 5 C -0.049 4.049 6 C -0.013 4.013 7 H 0.096 0.904 8 C -0.184 4.184 9 C -0.038 4.038 10 C -0.556 4.556 11 H 0.095 0.905 12 C -0.130 4.130 13 N -0.539 5.539 14 Si 0.699 3.301 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.186 1.186 18 N -0.127 5.127 19 N -0.160 5.160 20 C -0.039 4.039 21 N -0.167 5.167 22 C -0.081 4.081 23 C -0.153 4.153 24 C -0.096 4.096 25 C -0.181 4.181 26 C -0.032 4.032 27 O -0.296 6.296 28 C -0.012 4.012 29 C -0.067 4.067 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.026 0.974 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.109 0.891 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.118 0.882 51 H 0.081 0.919 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 14.859 -15.568 -15.770 26.681 hybrid contribution 0.511 0.803 -0.338 1.010 sum 15.370 -14.765 -16.108 26.715 Atomic orbital electron populations 1.24014 0.95547 1.02783 0.97336 1.22988 0.96131 0.97817 1.02602 1.20919 0.91823 0.97594 0.87895 1.46338 1.10081 1.47735 1.11471 1.25665 0.99927 0.99150 0.80202 1.19762 0.85975 0.97486 0.98028 0.90424 1.21670 1.02725 0.96704 0.97308 1.19604 0.98561 0.89070 0.96522 1.21010 0.92621 0.98530 1.43443 0.90521 1.24932 0.95795 0.97600 0.94658 1.69893 1.24469 1.15244 1.44339 0.86889 0.84905 0.80401 0.77915 1.20451 1.21241 1.18592 1.74028 0.97111 1.16573 1.24980 1.74459 1.23915 1.17310 1.00316 1.22364 0.84712 1.03552 0.93322 1.61589 1.25043 1.09824 1.20243 1.22958 0.90963 0.94497 0.99732 1.22395 0.97990 0.97858 0.97017 1.21879 0.95222 0.95999 0.96486 1.22899 0.97026 1.01332 0.96892 1.23480 0.85492 1.01396 0.92800 1.89204 1.27946 1.62926 1.49513 1.23330 0.99948 0.92313 0.85618 1.23277 0.93054 0.93058 0.97287 0.87653 0.87764 0.86870 0.87992 0.88010 0.92163 0.90140 0.94677 0.95028 0.97359 0.92665 0.89827 0.90506 0.90257 0.90175 0.90126 0.89810 0.89095 0.92233 0.91894 0.88244 0.91887 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 14.32 29.01 0.42 -1.16 16 2 C -0.18 -1.93 9.85 -36.03 -0.35 -2.28 16 3 C 0.14 1.71 6.30 -5.20 -0.03 1.68 16 4 N -0.46 -7.36 2.79 -115.37 -0.32 -7.68 16 5 C 0.22 4.15 6.58 -154.02 -1.01 3.14 16 6 C 0.01 0.17 2.70 -91.77 -0.25 -0.08 16 7 H 0.08 1.43 6.97 -51.93 -0.36 1.07 16 8 C -0.13 -2.36 8.98 37.16 0.33 -2.03 16 9 C 0.00 0.02 3.50 -27.88 -0.10 -0.08 16 10 C -0.52 -14.12 8.96 -34.44 -0.31 -14.43 16 11 H 0.08 2.18 7.30 -52.49 -0.38 1.80 16 12 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 13 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 14 Si 0.87 21.94 27.47 -169.99 -4.67 17.27 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 18 N -0.29 -6.04 12.18 32.99 0.40 -5.64 16 19 N -0.32 -5.96 11.06 30.32 0.34 -5.63 16 20 C 0.32 4.98 6.71 -318.86 -2.14 2.84 16 21 N -0.44 -5.24 5.32 -170.65 -0.91 -6.15 16 22 C 0.05 0.47 6.66 -2.52 -0.02 0.45 16 23 C -0.11 -0.84 6.10 -25.94 -0.16 -0.99 16 24 C -0.09 -0.76 0.87 -153.98 -0.13 -0.89 16 25 C -0.14 -1.00 6.38 -25.69 -0.16 -1.16 16 26 C 0.05 0.32 7.67 38.12 0.29 0.61 16 27 O -0.38 -3.69 11.66 -35.23 -0.41 -4.10 16 28 C 0.06 0.52 6.76 37.22 0.25 0.77 16 29 C 0.06 0.64 5.19 -2.32 -0.01 0.63 16 30 H 0.11 1.03 7.84 -52.49 -0.41 0.62 16 31 H 0.10 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.10 1.24 6.92 -51.93 -0.36 0.88 16 34 H 0.10 1.07 8.14 -51.92 -0.42 0.65 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.58 6.95 -51.93 -0.36 1.22 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.03 0.80 7.20 -51.93 -0.37 0.43 16 39 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 0.95 6.90 -51.93 -0.36 0.59 16 43 H 0.08 0.54 7.53 -51.93 -0.39 0.15 16 44 H 0.08 0.46 7.46 -51.93 -0.39 0.07 16 45 H 0.08 0.61 7.68 -51.93 -0.40 0.21 16 46 H 0.08 0.47 7.44 -51.93 -0.39 0.09 16 47 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.06 0.43 7.51 -51.93 -0.39 0.04 16 50 H 0.10 0.84 7.85 -51.93 -0.41 0.43 16 51 H 0.06 0.79 7.79 -51.93 -0.40 0.38 16 52 H 0.09 0.97 8.00 -51.93 -0.42 0.55 16 LS Contribution 410.36 15.07 6.18 6.18 Total: -1.00 -33.02 410.36 -10.83 -43.85 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -8.73 Total: -0.70 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -3.48 Total: -11.02 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.28 Total: -51.47 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.41 Total: -4.10 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.02 -10.83 -43.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121601896.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.087 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds