Wall clock time and date at job start Wed Apr 1 2020 04:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50698 * 119.99666 * 2 1 4 4 N 1.46497 * 109.47345 * 125.17577 * 3 2 1 5 5 C 1.36742 * 127.13530 * 270.83382 * 4 3 2 6 6 C 1.50704 * 126.34460 * 359.96179 * 5 4 3 7 7 H 1.08998 * 109.46976 * 0.28838 * 6 5 4 8 8 C 1.53001 * 109.47200 * 120.28948 * 6 5 4 9 9 C 1.53005 * 109.46974 * 240.28883 * 6 5 4 10 10 C 1.50700 * 109.46765 * 175.00070 * 9 6 5 11 11 H 1.07998 * 119.99990 * 359.97438 * 10 9 6 12 12 C 1.37878 * 119.99787 * 179.97438 * 10 9 6 13 13 N 1.31512 * 120.00158 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99964 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.46884 * 89.99793 * 14 12 10 16 16 H 1.48495 * 109.47193 * 209.99880 * 14 12 10 17 17 H 1.48507 * 109.47055 * 330.00207 * 14 12 10 18 18 N 1.30285 * 107.30662 * 180.22632 * 5 4 3 19 19 N 1.28531 * 110.05771 * 359.76921 * 18 5 4 20 20 C 1.31223 * 109.85699 * 0.02562 * 19 18 5 21 21 N 1.38582 * 126.47423 * 179.97438 * 20 19 18 22 22 C 1.48017 * 110.99815 * 35.92374 * 21 20 19 23 23 C 1.54317 * 107.19804 * 214.52878 * 22 21 20 24 24 C 1.53197 * 104.76140 * 1.97001 * 23 22 21 25 25 C 1.53147 * 111.86443 * 141.56854 * 24 23 22 26 26 C 1.54824 * 103.55094 * 121.46627 * 25 24 23 27 27 O 1.44552 * 104.86581 * 23.72541 * 26 25 24 28 28 C 1.44756 * 105.52170 * 320.39062 * 27 26 25 29 29 C 1.49087 * 111.18540 * 278.33556 * 21 20 19 30 30 H 1.08002 * 119.99493 * 0.02562 * 1 2 3 31 31 H 1.07994 * 119.99695 * 180.02562 * 1 2 3 32 32 H 1.07991 * 119.99948 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47750 * 5.16868 * 3 2 1 34 34 H 1.09008 * 109.46474 * 245.16640 * 3 2 1 35 35 H 1.09001 * 109.47254 * 59.99521 * 8 6 5 36 36 H 1.08995 * 109.47072 * 180.02562 * 8 6 5 37 37 H 1.09001 * 109.46619 * 299.99840 * 8 6 5 38 38 H 1.09001 * 109.46408 * 294.99794 * 9 6 5 39 39 H 1.09002 * 109.46959 * 55.00054 * 9 6 5 40 40 H 0.97000 * 120.00100 * 179.97438 * 13 12 10 41 41 H 1.09000 * 109.92033 * 95.08837 * 22 21 20 42 42 H 1.08996 * 109.92668 * 333.97627 * 22 21 20 43 43 H 1.09002 * 110.37790 * 120.78534 * 23 22 21 44 44 H 1.09001 * 110.38032 * 243.03717 * 23 22 21 45 45 H 1.08999 * 110.60423 * 239.98148 * 25 24 23 46 46 H 1.08997 * 110.60600 * 2.79545 * 25 24 23 47 47 H 1.08996 * 110.36173 * 142.56973 * 26 25 24 48 48 H 1.09001 * 110.35790 * 264.88227 * 26 25 24 49 49 H 1.08999 * 110.43368 * 280.42834 * 28 27 26 50 50 H 1.08998 * 110.43091 * 157.93684 * 28 27 26 51 51 H 1.08990 * 110.53639 * 39.67527 * 29 21 20 52 52 H 1.09000 * 110.86826 * 276.63594 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9967 1.3303 1.1290 5 6 2.7462 1.7754 2.3974 6 6 1.4443 2.3400 2.9049 7 1 0.7096 2.3393 2.0998 8 6 0.9328 1.4808 4.0630 9 6 1.6656 3.7734 3.3922 10 6 0.3432 4.3801 3.7850 11 1 -0.5643 3.8014 3.6956 12 6 0.2919 5.6740 4.2586 13 7 -0.8622 6.2036 4.6009 14 14 1.8616 6.6747 4.4139 15 1 2.1062 7.4114 3.1479 16 1 1.7228 7.6429 5.5312 17 1 3.0036 5.7651 4.6859 18 7 3.8432 1.6263 3.0842 19 7 4.7614 1.1166 2.3432 20 6 4.2956 0.9121 1.1336 21 7 4.9927 0.3771 0.0620 22 6 5.9322 -0.6744 0.5121 23 6 7.1769 -0.5934 -0.3964 24 6 6.8992 0.5851 -1.3350 25 6 8.1620 1.4076 -1.6069 26 6 8.3139 1.3409 -3.1462 27 8 6.9824 1.0691 -3.6388 28 6 6.4123 0.1171 -2.7092 29 6 5.8301 1.4131 -0.6073 30 1 -0.5399 0.9354 -0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8500 -0.9352 0.0004 33 1 1.3589 2.1315 0.0926 34 1 2.6189 1.4039 -0.9327 35 1 1.6676 1.4815 4.8681 36 1 -0.0090 1.8889 4.4297 37 1 0.7752 0.4597 3.7157 38 1 2.3320 3.7650 4.2547 39 1 2.1131 4.3639 2.5928 40 1 -0.8982 7.1138 4.9344 41 1 5.4657 -1.6549 0.4165 42 1 6.2173 -0.4985 1.5493 43 1 8.0696 -0.4021 0.1991 44 1 7.2918 -1.5156 -0.9660 45 1 8.0265 2.4382 -1.2790 46 1 9.0250 0.9598 -1.1141 47 1 8.6742 2.2940 -3.5334 48 1 8.9934 0.5357 -3.4257 49 1 6.7785 -0.8875 -2.9208 50 1 5.3237 0.1440 -2.7568 51 1 6.2888 2.0699 0.1317 52 1 5.2392 1.9897 -1.3190 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121601896.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:24 Heat of formation + Delta-G solvation = 43.906068 kcal Electronic energy + Delta-G solvation = -31633.314977 eV Core-core repulsion = 27634.090769 eV Total energy + Delta-G solvation = -3999.224208 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.11155 -41.47640 -38.72774 -37.40719 -36.87272 -34.52757 -34.09203 -33.53314 -31.28907 -30.22489 -29.98437 -29.10284 -27.83444 -26.38022 -25.72757 -24.06689 -23.61780 -23.12888 -22.03148 -20.94948 -20.62430 -20.44532 -19.11981 -18.36901 -17.56147 -17.30398 -17.10910 -16.58094 -16.34261 -16.19207 -15.92130 -15.67148 -15.52243 -15.24203 -15.03578 -14.71804 -14.55965 -14.30311 -14.07113 -13.88925 -13.50928 -13.36235 -13.16674 -13.05785 -12.96048 -12.73632 -12.68995 -12.58016 -12.46795 -12.41694 -12.03077 -12.02526 -11.86342 -11.80853 -11.66302 -11.60316 -11.40926 -11.28665 -11.09230 -10.77203 -10.69584 -10.53478 -10.34112 -9.66330 -8.29387 -6.30843 0.63100 0.89324 1.29518 1.34498 1.46460 1.55511 1.71254 2.33825 2.64752 3.01895 3.06039 3.21135 3.36029 3.44476 3.64163 3.67981 3.79396 3.86519 3.98198 4.06089 4.09762 4.14854 4.20595 4.29927 4.31411 4.38303 4.44680 4.48547 4.56943 4.60873 4.68498 4.73157 4.81277 4.85489 4.89780 4.92648 4.93904 4.97102 5.00564 5.02407 5.07047 5.08072 5.13599 5.19101 5.30507 5.37713 5.45541 5.51442 5.57731 5.65031 5.67196 5.86818 6.14008 6.26507 6.74783 7.33074 7.66672 8.85971 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012566 B = 0.002968 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.691743 B = 9430.737761 C =10280.689606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.187 4.187 3 C 0.134 3.866 4 N -0.460 5.460 5 C 0.205 3.795 6 C 0.017 3.983 7 H 0.092 0.908 8 C -0.118 4.118 9 C 0.009 3.991 10 C -0.513 4.513 11 H 0.057 0.943 12 C 0.019 3.981 13 N -0.941 5.941 14 Si 0.927 3.073 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.263 1.263 18 N -0.324 5.324 19 N -0.347 5.347 20 C 0.337 3.663 21 N -0.434 5.434 22 C 0.041 3.959 23 C -0.104 4.104 24 C -0.087 4.087 25 C -0.141 4.141 26 C 0.043 3.957 27 O -0.403 6.403 28 C 0.066 3.934 29 C 0.060 3.940 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.014 0.986 39 H 0.004 0.996 40 H 0.266 0.734 41 H 0.096 0.904 42 H 0.053 0.947 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.070 0.930 46 H 0.101 0.899 47 H 0.096 0.904 48 H 0.077 0.923 49 H 0.083 0.917 50 H 0.093 0.907 51 H 0.042 0.958 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.067 -17.285 -18.585 30.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.205 4.205 3 C 0.013 3.987 4 N -0.151 5.151 5 C -0.063 4.063 6 C -0.004 4.004 7 H 0.110 0.890 8 C -0.176 4.176 9 C -0.030 4.030 10 C -0.551 4.551 11 H 0.075 0.925 12 C -0.179 4.179 13 N -0.582 5.582 14 Si 0.753 3.247 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.188 1.188 18 N -0.163 5.163 19 N -0.191 5.191 20 C -0.021 4.021 21 N -0.160 5.160 22 C -0.085 4.085 23 C -0.142 4.142 24 C -0.088 4.088 25 C -0.179 4.179 26 C -0.033 4.033 27 O -0.323 6.323 28 C -0.010 4.010 29 C -0.067 4.067 30 H 0.123 0.877 31 H 0.140 0.860 32 H 0.133 0.867 33 H 0.119 0.881 34 H 0.137 0.863 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.033 0.967 39 H 0.022 0.978 40 H 0.075 0.925 41 H 0.114 0.886 42 H 0.071 0.929 43 H 0.106 0.894 44 H 0.124 0.876 45 H 0.089 0.911 46 H 0.120 0.880 47 H 0.114 0.886 48 H 0.096 0.904 49 H 0.101 0.899 50 H 0.111 0.889 51 H 0.060 0.940 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 16.462 -17.214 -17.919 29.806 hybrid contribution -0.016 1.243 0.242 1.266 sum 16.446 -15.971 -17.677 28.948 Atomic orbital electron populations 1.24207 0.95250 1.03694 0.95433 1.22884 0.96375 0.97026 1.04259 1.21213 0.91668 0.98557 0.87246 1.46492 1.10586 1.46840 1.11216 1.25256 0.99182 1.00368 0.81533 1.19522 0.87010 0.95124 0.98717 0.89031 1.21566 1.01466 0.97905 0.96674 1.19431 0.96169 0.91685 0.95685 1.21248 0.93365 0.98252 1.42227 0.92477 1.25667 0.98410 0.98955 0.94821 1.70000 1.26371 1.15860 1.45930 0.85997 0.81308 0.79054 0.78370 1.19408 1.20598 1.18789 1.73929 0.98083 1.17635 1.26619 1.74393 1.24079 1.18922 1.01696 1.22764 0.84731 1.01248 0.93318 1.61830 1.25601 1.10146 1.18422 1.23080 0.92021 0.94264 0.99169 1.22400 0.96646 0.98667 0.96457 1.21831 0.94678 0.95874 0.96423 1.22905 0.97064 1.00746 0.97220 1.23627 0.84742 1.02445 0.92508 1.89180 1.29308 1.63504 1.50261 1.23375 0.99692 0.92939 0.85041 1.23303 0.93618 0.93012 0.96739 0.87653 0.85969 0.86671 0.88053 0.86321 0.93400 0.91422 0.92164 0.96723 0.97758 0.92465 0.88584 0.92876 0.89435 0.87552 0.91132 0.88006 0.88599 0.90450 0.89944 0.88895 0.93984 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 14.32 67.77 0.97 -1.63 16 2 C -0.19 -3.71 9.85 25.64 0.25 -3.46 16 3 C 0.13 3.09 6.30 85.63 0.54 3.63 16 4 N -0.46 -14.25 2.79 -518.91 -1.45 -15.70 16 5 C 0.21 7.81 6.58 137.64 0.91 8.72 16 6 C 0.02 0.68 2.70 -11.54 -0.03 0.65 16 7 H 0.09 3.32 6.97 -2.39 -0.02 3.30 16 8 C -0.12 -4.43 8.98 71.98 0.65 -3.79 16 9 C 0.01 0.42 3.50 29.85 0.10 0.53 16 10 C -0.51 -28.39 8.96 25.60 0.23 -28.16 16 11 H 0.06 3.33 7.30 -2.91 -0.02 3.30 16 12 C 0.02 1.12 5.47 84.66 0.46 1.58 16 13 N -0.94 -57.59 13.96 21.45 0.30 -57.29 16 14 Si 0.93 45.63 27.47 68.60 1.88 47.51 16 15 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 17 H -0.26 -12.94 6.54 99.48 0.65 -12.29 16 18 N -0.32 -13.75 12.18 -49.54 -0.60 -14.35 16 19 N -0.35 -13.21 11.06 -58.00 -0.64 -13.85 16 20 C 0.34 10.41 6.71 260.11 1.75 12.15 16 21 N -0.43 -9.74 5.32 -693.81 -3.69 -13.43 16 22 C 0.04 0.77 6.66 86.53 0.58 1.35 16 23 C -0.10 -1.21 6.10 31.11 0.19 -1.02 16 24 C -0.09 -1.19 0.87 -51.84 -0.04 -1.24 16 25 C -0.14 -1.64 6.38 31.27 0.20 -1.44 16 26 C 0.04 0.50 7.67 72.60 0.56 1.05 16 27 O -0.40 -7.02 11.66 -148.98 -1.74 -8.76 16 28 C 0.07 0.88 6.76 72.02 0.49 1.37 16 29 C 0.06 1.22 5.19 86.07 0.45 1.67 16 30 H 0.11 1.86 7.84 -2.91 -0.02 1.84 16 31 H 0.12 1.72 8.06 -2.91 -0.02 1.69 16 32 H 0.12 2.27 8.06 -2.92 -0.02 2.25 16 33 H 0.10 2.35 6.92 -2.39 -0.02 2.33 16 34 H 0.12 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 2.68 6.95 -2.39 -0.02 2.67 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.01 0.75 7.20 -2.39 -0.02 0.73 16 39 H 0.00 0.20 7.57 -2.39 -0.02 0.18 16 40 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 41 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.05 1.28 6.90 -2.39 -0.02 1.26 16 43 H 0.09 0.93 7.53 -2.39 -0.02 0.91 16 44 H 0.11 0.75 7.46 -2.39 -0.02 0.73 16 45 H 0.07 0.97 7.68 -2.39 -0.02 0.96 16 46 H 0.10 0.83 7.44 -2.39 -0.02 0.81 16 47 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.08 0.80 7.51 -2.39 -0.02 0.79 16 50 H 0.09 1.36 7.85 -2.39 -0.02 1.34 16 51 H 0.04 1.04 7.79 -2.39 -0.02 1.03 16 52 H 0.09 1.81 8.00 -2.39 -0.02 1.80 16 Total: -1.00 -72.45 410.36 3.14 -69.31 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.84 Total: 14.60 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 8.24 Total: -8.03 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -6.08 Total: -114.63 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -1.74 Total: -8.76 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.88 Total: 47.51 kcal Total: -72.45 3.14 -69.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121601896.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.218 kcal (2) G-P(sol) polarization free energy of solvation -72.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds