Wall clock time and date at job start Wed Apr 1 2020 04:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.08998 * 109.47237 * 326.12829 * 3 2 1 5 5 C 1.52998 * 109.47098 * 86.12629 * 3 2 1 6 6 N 1.46899 * 109.46783 * 206.12826 * 3 2 1 7 7 C 1.46901 * 111.00375 * 56.04658 * 6 3 2 8 8 C 1.38582 * 111.00106 * 180.02562 * 6 3 2 9 9 N 1.31217 * 126.47068 * 317.90080 * 8 6 3 10 10 N 1.28526 * 109.85730 * 180.02562 * 9 8 6 11 11 C 1.30284 * 110.05863 * 359.97438 * 10 9 8 12 12 C 1.50696 * 126.35214 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.47468 * 90.02077 * 12 11 10 14 14 C 1.52997 * 109.47258 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.46920 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00081 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00005 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00098 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00281 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46767 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47308 * 119.99428 * 19 17 15 22 22 H 1.48496 * 109.46945 * 239.99999 * 19 17 15 23 23 N 1.36452 * 126.47334 * 138.20772 * 8 6 3 24 24 C 1.46494 * 127.13941 * 0.02562 * 23 8 6 25 25 C 1.53002 * 109.47152 * 270.26114 * 24 23 8 26 26 H 1.09002 * 110.33093 * 307.24752 * 25 24 23 27 27 C 1.54483 * 110.37333 * 185.00129 * 25 24 23 28 28 C 1.54506 * 104.06118 * 217.19236 * 27 25 24 29 29 C 1.54480 * 104.06528 * 359.97438 * 28 27 25 30 30 O 1.44422 * 104.80008 * 23.98477 * 29 28 27 31 31 H 4.18745 * 15.04069 * 359.97438 * 4 2 1 32 32 H 1.09006 * 109.47012 * 59.99690 * 5 3 2 33 33 H 1.09001 * 109.47050 * 179.97438 * 5 3 2 34 34 H 1.08995 * 109.47196 * 300.00264 * 5 3 2 35 35 H 1.08997 * 109.47194 * 176.84879 * 7 6 3 36 36 H 1.09004 * 109.47214 * 296.84726 * 7 6 3 37 37 H 1.08995 * 109.47078 * 56.84258 * 7 6 3 38 38 H 1.09004 * 109.47468 * 210.02365 * 12 11 10 39 39 H 1.09005 * 109.46971 * 330.02279 * 12 11 10 40 40 H 1.08994 * 109.46896 * 300.00497 * 13 12 11 41 41 H 1.08995 * 109.46777 * 60.00149 * 13 12 11 42 42 H 1.09004 * 109.47221 * 300.00008 * 14 13 12 43 43 H 1.08995 * 109.47456 * 60.00134 * 14 13 12 44 44 H 0.96996 * 120.00198 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.47188 * 30.26239 * 24 23 8 46 46 H 1.08994 * 109.47367 * 150.26422 * 24 23 8 47 47 H 1.09002 * 110.50889 * 335.83665 * 27 25 24 48 48 H 1.09002 * 110.51255 * 98.54233 * 27 25 24 49 49 H 1.09000 * 110.51318 * 118.64538 * 28 27 25 50 50 H 1.09005 * 110.51098 * 241.21686 * 28 27 25 51 51 H 1.08999 * 110.36933 * 142.80852 * 29 28 27 52 52 H 1.08995 * 110.37953 * 265.03814 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0098 -0.8524 0.5727 5 6 3.1561 -0.0966 -1.4392 6 7 3.1351 1.2443 0.6099 7 6 2.5884 1.4180 1.9623 8 6 4.5204 1.2785 0.6257 9 7 5.3218 0.2835 0.9249 10 7 6.5454 0.6672 0.8384 11 6 6.5969 1.9191 0.4814 12 6 7.8448 2.7372 0.2705 13 6 8.2926 2.6180 -1.1877 14 6 9.5599 3.4481 -1.4016 15 6 10.0004 3.3311 -2.8379 16 1 9.4335 2.7250 -3.5290 17 6 11.1279 3.9971 -3.2696 18 7 11.8186 4.7348 -2.4279 19 14 11.6738 3.8527 -5.0503 20 1 10.7328 2.9706 -5.7864 21 1 11.6827 5.1994 -5.6761 22 1 13.0398 3.2729 -5.1038 23 7 5.3086 2.3548 0.3388 24 6 4.8664 3.6977 -0.0448 25 6 4.7311 3.7747 -1.5669 26 1 5.6519 3.4424 -2.0463 27 6 4.3871 5.2159 -2.0041 28 6 3.4064 5.0266 -3.1829 29 6 3.2744 3.4935 -3.3190 30 8 3.6136 2.9767 -2.0138 31 1 -1.0500 -0.0005 0.0009 32 1 2.7923 0.7565 -2.0120 33 1 4.2461 -0.0956 -1.4392 34 1 2.7932 -1.0193 -1.8917 35 1 3.0098 2.3170 2.4119 36 1 1.5040 1.5139 1.9063 37 1 2.8454 0.5520 2.5721 38 1 7.6380 3.7819 0.5028 39 1 8.6353 2.3692 0.9245 40 1 8.4994 1.5734 -1.4200 41 1 7.5021 2.9860 -1.8417 42 1 9.3534 4.4929 -1.1692 43 1 10.3502 3.0797 -0.7476 44 1 12.6115 5.2036 -2.7317 45 1 3.9017 3.9083 0.4168 46 1 5.5984 4.4314 0.2923 47 1 3.9055 5.7573 -1.1897 48 1 5.2845 5.7394 -2.3339 49 1 2.4400 5.4745 -2.9515 50 1 3.8179 5.4588 -4.0952 51 1 2.2515 3.2225 -3.5803 52 1 3.9693 3.1179 -4.0701 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122877491.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:35 Heat of formation + Delta-G solvation = 87.675372 kcal Electronic energy + Delta-G solvation = -32029.406821 eV Core-core repulsion = 28032.080592 eV Total energy + Delta-G solvation = -3997.326228 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.86585 -39.48272 -38.38991 -35.36749 -34.62633 -33.36868 -32.35850 -32.20846 -30.66693 -30.33814 -29.73386 -27.24123 -26.08973 -25.38220 -24.03393 -23.74021 -22.45894 -21.27135 -20.90252 -20.64913 -19.92767 -18.13188 -17.45964 -16.70766 -16.34465 -16.27802 -16.13173 -15.65893 -15.41046 -15.07210 -14.86275 -14.49940 -14.11551 -13.86725 -13.79404 -13.56646 -12.99597 -12.79653 -12.59442 -12.42320 -12.36898 -12.03743 -11.97937 -11.88509 -11.78241 -11.56954 -11.55046 -11.30878 -11.23582 -10.93614 -10.86555 -10.85040 -10.73849 -10.58156 -10.48397 -10.30108 -10.04413 -9.88612 -9.65903 -9.49870 -9.18966 -8.99834 -8.43941 -8.38892 -6.04071 -4.06159 1.84429 2.14243 2.65913 2.70364 3.04468 3.28241 3.36470 3.40483 3.65079 3.77639 4.11722 4.36220 4.42288 4.48728 4.60891 4.68228 4.76544 4.81871 4.89317 5.04941 5.12069 5.13643 5.19949 5.23108 5.28608 5.32352 5.33955 5.49765 5.55887 5.56796 5.60128 5.63772 5.68888 5.75138 5.78874 5.83312 5.87246 5.94552 5.99957 6.07101 6.14448 6.26211 6.55791 6.61591 6.67595 6.73689 6.75371 7.01909 7.29028 7.41305 7.61836 7.74716 7.95356 8.37798 8.95365 9.00655 9.58275 11.07183 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.003144 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.137496 B = 8903.458929 C = 9897.188755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.209 3.791 4 H 0.080 0.920 5 C -0.137 4.137 6 N -0.448 5.448 7 C 0.032 3.968 8 C 0.350 3.650 9 N -0.318 5.318 10 N -0.290 5.290 11 C 0.202 3.798 12 C -0.036 4.036 13 C -0.102 4.102 14 C 0.023 3.977 15 C -0.519 4.519 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 N -0.462 5.462 24 C 0.121 3.879 25 C 0.057 3.943 26 H 0.085 0.915 27 C -0.146 4.146 28 C -0.152 4.152 29 C 0.043 3.957 30 O -0.349 6.349 31 H 0.218 0.782 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.045 0.955 42 H 0.016 0.984 43 H 0.020 0.980 44 H 0.260 0.740 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.076 0.924 48 H 0.086 0.914 49 H 0.073 0.927 50 H 0.077 0.923 51 H 0.088 0.912 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.675 -0.409 4.752 24.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.168 4.168 3 C 0.102 3.898 4 H 0.098 0.902 5 C -0.195 4.195 6 N -0.174 5.174 7 C -0.115 4.115 8 C -0.006 4.006 9 N -0.162 5.162 10 N -0.129 5.129 11 C -0.065 4.065 12 C -0.076 4.076 13 C -0.141 4.141 14 C -0.014 4.014 15 C -0.557 4.557 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.209 1.209 23 N -0.154 5.154 24 C -0.002 4.002 25 C -0.002 4.002 26 H 0.102 0.898 27 C -0.185 4.185 28 C -0.189 4.189 29 C -0.034 4.034 30 O -0.268 6.268 31 H 0.235 0.765 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.038 0.962 44 H 0.070 0.930 45 H 0.121 0.879 46 H 0.126 0.874 47 H 0.095 0.905 48 H 0.105 0.895 49 H 0.092 0.908 50 H 0.096 0.904 51 H 0.107 0.893 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.329 -1.461 5.020 23.908 hybrid contribution 0.017 0.961 -1.098 1.459 sum -23.313 -0.500 3.922 23.645 Atomic orbital electron populations 1.24826 0.95678 0.99946 1.00994 1.22602 0.93600 1.00510 1.00118 1.18451 0.84210 0.89659 0.97454 0.90214 1.21782 1.01730 1.02615 0.93341 1.58566 1.00015 1.37453 1.21318 1.22457 1.00884 1.01543 0.86647 1.21941 0.90144 0.85384 1.03160 1.74546 0.96964 1.24131 1.20605 1.74037 1.11799 1.08442 1.18620 1.25299 0.85930 0.93563 1.01710 1.20364 0.89184 0.96662 1.01398 1.21688 0.99938 1.01815 0.90628 1.19097 0.90840 0.94471 0.96976 1.21242 1.10082 1.28992 0.95394 0.92723 1.25000 0.96544 0.95332 0.97456 1.69962 1.17697 1.31252 1.34494 0.86578 0.78686 0.77763 0.85251 1.19753 1.21051 1.20945 1.46219 1.06465 1.11370 1.51381 1.21943 1.02508 0.80952 0.94798 1.23440 0.92065 0.91056 0.93599 0.89766 1.22905 1.00514 0.96415 0.98638 1.22891 0.99973 0.97105 0.98970 1.23375 1.01052 0.92519 0.86475 1.89270 1.48916 1.56575 1.31996 0.76512 0.90371 0.91747 0.91913 0.91334 0.89944 0.93965 0.90526 0.88422 0.92410 0.93603 0.96535 0.96154 0.93033 0.87892 0.87402 0.90529 0.89514 0.90828 0.90421 0.89348 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.75 19.25 29.55 0.57 -1.18 16 2 C -0.17 -1.84 11.20 -37.12 -0.42 -2.26 16 3 C 0.21 2.59 2.33 -70.50 -0.16 2.42 16 4 H 0.08 1.05 7.90 -51.93 -0.41 0.64 16 5 C -0.14 -1.77 9.01 37.16 0.33 -1.43 16 6 N -0.45 -5.66 4.65 -177.98 -0.83 -6.48 16 7 C 0.03 0.34 9.13 60.07 0.55 0.89 16 8 C 0.35 5.25 5.31 -318.87 -1.69 3.55 16 9 N -0.32 -5.64 11.49 30.31 0.35 -5.29 16 10 N -0.29 -5.48 12.18 32.99 0.40 -5.07 16 11 C 0.20 3.36 7.32 -154.02 -1.13 2.24 16 12 C -0.04 -0.59 5.59 -27.88 -0.16 -0.75 16 13 C -0.10 -2.01 5.14 -26.73 -0.14 -2.14 16 14 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 15 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 19 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 N -0.46 -6.63 2.81 -114.09 -0.32 -6.95 16 24 C 0.12 1.36 5.63 -4.04 -0.02 1.33 16 25 C 0.06 0.67 3.52 -25.95 -0.09 0.57 16 26 H 0.08 1.20 6.32 -51.93 -0.33 0.87 16 27 C -0.15 -1.35 6.63 -25.16 -0.17 -1.52 16 28 C -0.15 -1.30 7.09 -25.16 -0.18 -1.48 16 29 C 0.04 0.43 7.63 37.93 0.29 0.72 16 30 O -0.35 -4.29 9.87 -35.23 -0.35 -4.64 16 31 H 0.22 1.12 7.80 -54.09 -0.42 0.70 16 32 H 0.08 1.03 6.64 -51.93 -0.34 0.69 16 33 H 0.06 0.99 7.06 -51.93 -0.37 0.63 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.68 8.09 -51.93 -0.42 0.25 16 36 H 0.08 0.75 7.12 -51.93 -0.37 0.38 16 37 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 1.08 7.26 -51.93 -0.38 0.71 16 39 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.05 0.87 6.32 -51.93 -0.33 0.54 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 45 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.11 1.03 7.24 -51.93 -0.38 0.65 16 47 H 0.08 0.60 7.87 -51.93 -0.41 0.19 16 48 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 51 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 52 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 422.83 15.07 6.37 6.37 Total: -1.00 -32.70 422.83 -10.39 -43.09 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -8.77 Total: -0.25 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -2.96 Total: -11.63 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.34 Total: -49.21 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.35 Total: -4.64 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -32.70 -10.39 -43.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122877491.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.764 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds