Wall clock time and date at job start Wed Apr 1 2020 04:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.09005 * 109.46708 * 204.48665 * 3 2 1 5 5 C 1.52995 * 109.47125 * 84.48686 * 3 2 1 6 6 N 1.46900 * 109.47129 * 324.48265 * 3 2 1 7 7 C 1.46902 * 111.00215 * 303.95313 * 6 3 2 8 8 C 1.38582 * 111.00059 * 180.02562 * 6 3 2 9 9 N 1.31215 * 126.47153 * 22.01506 * 8 6 3 10 10 N 1.28536 * 109.85798 * 180.25882 * 9 8 6 11 11 C 1.30297 * 110.05231 * 359.75302 * 10 9 8 12 12 C 1.50694 * 126.34598 * 179.97438 * 11 10 9 13 13 C 1.52991 * 109.47305 * 278.72848 * 12 11 10 14 14 C 1.53002 * 109.47386 * 175.43473 * 13 12 11 15 15 C 1.50700 * 109.47526 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99651 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00578 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99366 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00368 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46725 * 90.00157 * 19 17 15 21 21 H 1.48496 * 109.47481 * 209.99881 * 19 17 15 22 22 H 1.48506 * 109.47221 * 330.00308 * 19 17 15 23 23 N 1.36453 * 126.47290 * 201.85312 * 8 6 3 24 24 C 1.46498 * 127.13575 * 0.02562 * 23 8 6 25 25 C 1.52999 * 109.46924 * 83.28393 * 24 23 8 26 26 H 1.08997 * 110.55154 * 308.84373 * 25 24 23 27 27 C 1.55003 * 110.61576 * 185.97078 * 25 24 23 28 28 C 1.54808 * 102.09118 * 204.47291 * 27 25 24 29 29 C 1.54097 * 104.19054 * 20.88133 * 28 27 25 30 30 O 1.43750 * 107.41960 * 1.95299 * 29 28 27 31 31 H 4.18736 * 15.04013 * 0.02562 * 4 2 1 32 32 H 1.08993 * 109.47213 * 59.99754 * 5 3 2 33 33 H 1.09003 * 109.47090 * 179.97438 * 5 3 2 34 34 H 1.09011 * 109.46649 * 299.99656 * 5 3 2 35 35 H 1.08997 * 109.47054 * 301.67405 * 7 6 3 36 36 H 1.08999 * 109.47133 * 61.67250 * 7 6 3 37 37 H 1.08997 * 109.46791 * 181.66926 * 7 6 3 38 38 H 1.09011 * 109.47052 * 38.72713 * 12 11 10 39 39 H 1.09005 * 109.47156 * 158.72350 * 12 11 10 40 40 H 1.09002 * 109.47601 * 295.43310 * 13 12 11 41 41 H 1.09001 * 109.47424 * 55.43674 * 13 12 11 42 42 H 1.09001 * 109.47238 * 300.00007 * 14 13 12 43 43 H 1.08998 * 109.47170 * 59.99636 * 14 13 12 44 44 H 0.97002 * 119.99755 * 179.97438 * 18 17 15 45 45 H 1.08998 * 109.47346 * 323.27940 * 24 23 8 46 46 H 1.09004 * 109.47087 * 203.27995 * 24 23 8 47 47 H 1.09001 * 110.90484 * 86.27592 * 27 25 24 48 48 H 1.08997 * 110.93667 * 322.68572 * 27 25 24 49 49 H 1.08999 * 110.49259 * 262.20253 * 28 27 25 50 50 H 1.09004 * 110.60174 * 139.61269 * 28 27 25 51 51 H 1.09001 * 109.88518 * 121.45336 * 29 28 27 52 52 H 1.09004 * 109.88305 * 242.45494 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.9361 0.4260 5 6 3.1560 -0.1377 -1.4358 6 7 3.1362 -1.1264 0.8046 7 6 2.5895 -1.0776 2.1672 8 6 4.5215 -1.1556 0.8266 9 7 5.3267 -0.1462 0.5929 10 7 6.5491 -0.5306 0.6928 11 6 6.5959 -1.7963 0.9987 12 6 7.8409 -2.6201 1.2043 13 6 8.3929 -3.0577 -0.1538 14 6 9.7174 -3.7965 0.0480 15 6 10.2608 -4.2281 -1.2897 16 1 9.7158 -3.9987 -2.1935 17 6 11.4538 -4.9158 -1.3599 18 7 12.1177 -5.1947 -0.2594 19 14 12.1270 -5.4513 -3.0180 20 1 12.9976 -4.3812 -3.5677 21 1 12.9185 -6.6968 -2.8521 22 1 11.0002 -5.7016 -3.9524 23 7 5.3058 -2.2386 1.0982 24 6 4.8586 -3.5954 1.4227 25 6 4.5577 -4.3560 0.1297 26 1 3.8926 -3.7757 -0.5097 27 6 3.9406 -5.7429 0.4434 28 6 4.3024 -6.5532 -0.8251 29 6 5.4858 -5.7821 -1.4411 30 8 5.7819 -4.6791 -0.5682 31 1 -1.0500 -0.0010 0.0001 32 1 2.7923 0.6986 -2.0327 33 1 4.2461 -0.1368 -1.4358 34 1 2.7931 -1.0732 -1.8617 35 1 2.8681 -0.1343 2.6369 36 1 1.5031 -1.1560 2.1259 37 1 2.9916 -1.9064 2.7499 38 1 8.5895 -2.0233 1.7256 39 1 7.5996 -3.5009 1.7994 40 1 7.6775 -3.7207 -0.6404 41 1 8.5581 -2.1800 -0.7788 42 1 10.4328 -3.1336 0.5345 43 1 9.5522 -4.6742 0.6730 44 1 12.9568 -5.6788 -0.3087 45 1 3.9567 -3.5446 2.0327 46 1 5.6422 -4.1138 1.9753 47 1 2.8596 -5.6695 0.5630 48 1 4.3992 -6.1819 1.3294 49 1 3.4602 -6.5756 -1.5167 50 1 4.6040 -7.5665 -0.5598 51 1 6.3542 -6.4364 -1.5193 52 1 5.2122 -5.4102 -2.4286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122877493.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:39 Heat of formation + Delta-G solvation = 72.678802 kcal Electronic energy + Delta-G solvation = -31875.653384 eV Core-core repulsion = 27877.676855 eV Total energy + Delta-G solvation = -3997.976529 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -44.11026 -40.35502 -39.47982 -36.67279 -36.14061 -34.59154 -33.96010 -33.05029 -31.67521 -31.36618 -31.13217 -28.84200 -27.18416 -26.36616 -25.52082 -25.08726 -23.14784 -22.54319 -22.19455 -21.66439 -21.40866 -18.92796 -18.57081 -18.18843 -17.84060 -17.51712 -17.13456 -16.63781 -16.54377 -16.26455 -15.99812 -15.92169 -15.57709 -15.13745 -14.71721 -14.45491 -14.31458 -14.00973 -13.86241 -13.75516 -13.52087 -13.34900 -13.20241 -12.96728 -12.79059 -12.73167 -12.66651 -12.65906 -12.50006 -12.44650 -12.33080 -12.13358 -11.85179 -11.58146 -11.55179 -11.37501 -11.32212 -11.22212 -11.20057 -11.09104 -10.65769 -10.50760 -10.46525 -9.46775 -8.16747 -6.25825 0.68239 1.03924 1.39023 1.40846 1.51433 1.75098 1.81929 1.87797 2.42713 2.69128 2.82889 3.16260 3.30596 3.35326 3.53746 3.67734 3.72439 3.81401 3.87407 3.97165 4.05640 4.11411 4.16772 4.18665 4.31727 4.38296 4.45156 4.45970 4.49753 4.57888 4.66880 4.71339 4.76324 4.79526 4.85002 4.87494 4.94223 4.97638 5.06827 5.07211 5.09908 5.10738 5.16680 5.22446 5.32236 5.48123 5.53295 5.59461 5.83475 5.93157 5.96910 6.12972 6.31862 6.64545 6.88922 7.41832 7.69952 8.95014 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012676 B = 0.003059 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.290751 B = 9151.095389 C =10060.209587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.222 4.222 3 C 0.211 3.789 4 H 0.072 0.928 5 C -0.137 4.137 6 N -0.448 5.448 7 C 0.025 3.975 8 C 0.353 3.647 9 N -0.348 5.348 10 N -0.329 5.329 11 C 0.209 3.791 12 C -0.019 4.019 13 C -0.086 4.086 14 C 0.035 3.965 15 C -0.536 4.536 16 H 0.049 0.951 17 C 0.004 3.996 18 N -0.930 5.930 19 Si 0.958 3.042 20 H -0.276 1.276 21 H -0.278 1.278 22 H -0.266 1.266 23 N -0.462 5.462 24 C 0.112 3.888 25 C 0.058 3.942 26 H 0.067 0.933 27 C -0.132 4.132 28 C -0.145 4.145 29 C 0.037 3.963 30 O -0.389 6.389 31 H 0.256 0.744 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.036 0.964 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.028 0.972 42 H -0.009 1.009 43 H 0.001 0.999 44 H 0.263 0.737 45 H 0.140 0.860 46 H 0.112 0.888 47 H 0.109 0.891 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.089 0.911 51 H 0.073 0.927 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.440 0.569 5.228 29.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.222 4.222 3 C 0.105 3.895 4 H 0.089 0.911 5 C -0.195 4.195 6 N -0.173 5.173 7 C -0.121 4.121 8 C -0.004 4.004 9 N -0.192 5.192 10 N -0.167 5.167 11 C -0.060 4.060 12 C -0.058 4.058 13 C -0.125 4.125 14 C -0.003 4.003 15 C -0.574 4.574 16 H 0.067 0.933 17 C -0.194 4.194 18 N -0.571 5.571 19 Si 0.783 3.217 20 H -0.201 1.201 21 H -0.203 1.203 22 H -0.191 1.191 23 N -0.155 5.155 24 C -0.010 4.010 25 C 0.000 4.000 26 H 0.085 0.915 27 C -0.170 4.170 28 C -0.182 4.182 29 C -0.039 4.039 30 O -0.309 6.309 31 H 0.272 0.728 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.009 0.991 43 H 0.020 0.980 44 H 0.072 0.928 45 H 0.157 0.843 46 H 0.130 0.870 47 H 0.127 0.873 48 H 0.109 0.891 49 H 0.107 0.893 50 H 0.107 0.893 51 H 0.092 0.908 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -28.795 1.554 4.788 29.232 hybrid contribution 0.671 -0.792 -0.436 1.126 sum -28.124 0.762 4.352 28.469 Atomic orbital electron populations 1.25716 0.96297 0.97127 0.97474 1.22373 0.93388 1.03279 1.03192 1.18228 0.85629 0.91194 0.94444 0.91063 1.21765 1.00769 1.02979 0.93981 1.58934 0.98005 1.44762 1.15630 1.22656 1.02425 1.02001 0.85064 1.22406 0.91050 0.84342 1.02607 1.74451 0.96556 1.24279 1.23881 1.73948 1.12941 1.10216 1.19630 1.24969 0.86664 0.92577 1.01744 1.20051 0.88979 0.97288 0.99528 1.21393 0.97754 0.98773 0.94540 1.18910 0.91751 0.94068 0.95527 1.21588 1.06237 1.35541 0.94020 0.93256 1.25864 0.97174 0.96107 1.00240 1.70079 1.16243 1.41663 1.29082 0.85558 0.78480 0.77881 0.79808 1.20125 1.20277 1.19056 1.46244 1.05473 1.10725 1.53009 1.22349 1.04023 0.77173 0.97441 1.23601 0.86723 0.97122 0.92559 0.91463 1.23073 1.02930 0.92035 0.98979 1.22887 0.97630 1.00275 0.97448 1.23233 0.99156 0.88163 0.93381 1.89071 1.31998 1.51566 1.58275 0.72776 0.90007 0.93569 0.91960 0.94517 0.87475 0.89627 0.89505 0.88717 0.90967 0.95335 0.99086 0.98024 0.92788 0.84269 0.87012 0.87274 0.89063 0.89293 0.89262 0.90821 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 19.25 74.32 1.43 -0.28 16 2 C -0.22 -3.82 11.18 31.13 0.35 -3.47 16 3 C 0.21 4.63 2.20 43.11 0.09 4.73 16 4 H 0.07 1.74 7.90 -2.38 -0.02 1.72 16 5 C -0.14 -3.30 8.98 71.98 0.65 -2.65 16 6 N -0.45 -9.69 4.65 -717.02 -3.33 -13.02 16 7 C 0.02 0.38 9.14 127.69 1.17 1.55 16 8 C 0.35 10.16 5.99 260.11 1.56 11.72 16 9 N -0.35 -12.57 10.10 -58.00 -0.59 -13.15 16 10 N -0.33 -13.27 12.18 -49.54 -0.60 -13.87 16 11 C 0.21 7.46 7.32 137.64 1.01 8.47 16 12 C -0.02 -0.69 5.66 29.84 0.17 -0.52 16 13 C -0.09 -3.89 5.13 30.59 0.16 -3.74 16 14 C 0.03 1.88 4.97 29.85 0.15 2.03 16 15 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 16 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 17 C 0.00 0.23 5.46 84.65 0.46 0.69 16 18 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 19 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 N -0.46 -13.02 2.81 -514.86 -1.45 -14.47 16 24 C 0.11 2.20 5.82 86.38 0.50 2.70 16 25 C 0.06 1.23 3.58 31.28 0.11 1.34 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 27 C -0.13 -1.79 6.59 31.90 0.21 -1.58 16 28 C -0.14 -2.30 7.01 31.58 0.22 -2.08 16 29 C 0.04 0.94 7.69 72.35 0.56 1.50 16 30 O -0.39 -11.79 8.83 -148.98 -1.32 -13.11 16 31 H 0.26 0.70 7.80 -4.42 -0.03 0.67 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.05 1.42 6.29 -2.39 -0.02 1.40 16 34 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.11 1.23 7.06 -2.39 -0.02 1.21 16 37 H 0.09 1.06 6.72 -2.39 -0.02 1.05 16 38 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 39 H 0.09 3.03 6.94 -2.38 -0.02 3.02 16 40 H 0.07 3.28 5.56 -2.39 -0.01 3.27 16 41 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 42 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 43 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 45 H 0.14 1.70 6.75 -2.39 -0.02 1.68 16 46 H 0.11 2.14 6.94 -2.39 -0.02 2.13 16 47 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.09 1.09 8.06 -2.39 -0.02 1.07 16 49 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 52 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -78.24 419.72 4.95 -73.30 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.89 Total: 14.77 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 9.03 Total: -11.11 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -5.68 Total: -111.44 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -1.32 Total: -13.11 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -78.24 4.95 -73.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122877493.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.976 kcal (2) G-P(sol) polarization free energy of solvation -78.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds