Wall clock time and date at job start Wed Apr 1 2020 04:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50712 * 119.99796 * 2 1 4 4 C 1.50697 * 120.00144 * 179.97438 * 2 1 3 5 5 C 1.53003 * 109.47285 * 95.00249 * 4 2 1 6 6 H 1.09006 * 109.46733 * 304.99657 * 5 4 2 7 7 C 1.52994 * 109.47198 * 64.99626 * 5 4 2 8 8 C 1.50701 * 109.46951 * 185.00033 * 5 4 2 9 9 O 1.21275 * 120.00155 * 359.97438 * 8 5 4 10 10 N 1.34773 * 119.99468 * 179.97438 * 8 5 4 11 11 C 1.46502 * 119.99687 * 179.97438 * 10 8 5 12 12 C 1.50702 * 109.47122 * 180.02562 * 11 10 8 13 13 C 1.35315 * 126.04034 * 259.97845 * 12 11 10 14 14 N 1.34947 * 107.74580 * 180.02562 * 13 12 11 15 15 H 0.96998 * 126.03962 * 180.02562 * 14 13 12 16 16 N 1.40084 * 107.92515 * 359.74900 * 14 13 12 17 17 C 1.30834 * 108.20620 * 0.41869 * 16 14 13 18 18 C 1.50696 * 125.90213 * 179.85185 * 17 16 14 19 19 H 1.09000 * 110.78568 * 181.48186 * 18 17 16 20 20 C 1.55405 * 110.85075 * 304.77871 * 18 17 16 21 21 C 1.54914 * 101.66697 * 153.69831 * 20 18 17 22 22 N 1.47426 * 104.82992 * 323.07703 * 21 20 18 23 23 C 1.36936 * 125.64583 * 204.09666 * 22 21 20 24 24 H 1.07997 * 119.99931 * 180.02562 * 23 22 21 25 25 C 1.38819 * 120.00094 * 0.03301 * 23 22 21 26 26 N 1.31618 * 119.99956 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99883 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47090 * 90.00295 * 27 25 23 29 29 H 1.48500 * 109.46944 * 210.00181 * 27 25 23 30 30 H 1.48498 * 109.47226 * 330.00384 * 27 25 23 31 31 C 1.47018 * 108.70517 * 24.12623 * 22 21 20 32 32 H 1.08004 * 120.00209 * 0.02562 * 1 2 3 33 33 H 1.08002 * 119.99975 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46760 * 269.99521 * 3 2 1 35 35 H 1.08998 * 109.47185 * 29.99888 * 3 2 1 36 36 H 1.08991 * 109.46710 * 150.00110 * 3 2 1 37 37 H 1.08998 * 109.46963 * 334.99997 * 4 2 1 38 38 H 1.09001 * 109.46808 * 215.00037 * 4 2 1 39 39 H 1.08997 * 109.47463 * 300.00585 * 7 5 4 40 40 H 1.09006 * 109.47253 * 60.00350 * 7 5 4 41 41 H 1.08997 * 109.47151 * 180.02562 * 7 5 4 42 42 H 0.97006 * 120.00333 * 0.02562 * 10 8 5 43 43 H 1.08999 * 109.47190 * 60.00260 * 11 10 8 44 44 H 1.08997 * 109.47001 * 299.99673 * 11 10 8 45 45 H 1.07994 * 126.12904 * 359.97438 * 13 12 11 46 46 H 1.09000 * 110.89538 * 35.62635 * 20 18 17 47 47 H 1.09001 * 111.03900 * 271.83121 * 20 18 17 48 48 H 1.08999 * 110.37121 * 204.23438 * 21 20 18 49 49 H 1.09001 * 110.45739 * 81.96050 * 21 20 18 50 50 H 0.96998 * 120.00119 * 179.97438 * 26 25 23 51 51 H 1.09002 * 109.88241 * 118.36067 * 31 22 21 52 52 H 1.09000 * 109.88049 * 239.37196 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4363 6 1 1.5245 -1.7043 -2.0466 7 6 3.4045 -0.6532 -2.0042 8 6 3.0717 -3.0468 -1.4482 9 8 3.2251 -3.6541 -0.4097 10 7 3.4774 -3.5901 -2.6129 11 6 4.1042 -4.9142 -2.6245 12 6 4.4626 -5.2880 -4.0397 13 6 3.7546 -6.1084 -4.8501 14 7 4.4070 -6.1854 -6.0289 15 1 4.1304 -6.7027 -6.8014 16 7 5.5508 -5.3815 -5.9419 17 6 5.5861 -4.8486 -4.7476 18 6 6.6501 -3.9172 -4.2266 19 1 6.4502 -3.6423 -3.1909 20 6 8.0599 -4.5565 -4.3627 21 6 8.9651 -3.3026 -4.4540 22 7 8.1844 -2.3301 -5.2402 23 6 8.7028 -1.2916 -5.9668 24 1 8.0438 -0.6313 -6.5109 25 6 10.0754 -1.0877 -6.0042 26 7 10.8786 -1.8929 -5.3416 27 14 10.7825 0.3293 -6.9948 28 1 10.8770 1.5361 -6.1346 29 1 12.1357 -0.0362 -7.4852 30 1 9.8969 0.6147 -8.1522 31 6 6.7571 -2.6594 -5.1144 32 1 -0.5401 0.9353 -0.0004 33 1 -0.5400 -0.9353 0.0004 34 1 2.2452 1.6198 -1.0277 35 1 1.4744 2.0649 0.5138 36 1 3.0158 1.1749 0.5138 37 1 1.4385 -2.0852 0.4352 38 1 2.9741 -1.1985 0.5900 39 1 2.9385 0.3321 -1.9955 40 1 4.3074 -0.6335 -1.3938 41 1 3.6634 -0.9233 -3.0279 42 1 3.3550 -3.1041 -3.4435 43 1 3.4086 -5.6491 -2.2193 44 1 5.0074 -4.8939 -2.0147 45 1 2.8330 -6.6119 -4.5983 46 1 8.1292 -5.1553 -5.2709 47 1 8.3058 -5.1527 -3.4840 48 1 9.8967 -3.5436 -4.9658 49 1 9.1708 -2.9081 -3.4589 50 1 11.8377 -1.7506 -5.3680 51 1 6.2250 -1.8302 -4.6481 52 1 6.3356 -2.8634 -6.0986 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130411949.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:03 Heat of formation + Delta-G solvation = 67.378301 kcal Electronic energy + Delta-G solvation = -30796.078526 eV Core-core repulsion = 26797.872150 eV Total energy + Delta-G solvation = -3998.206376 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.35528 -39.92130 -37.26549 -37.01369 -34.99679 -33.16108 -32.93382 -31.25389 -30.54115 -29.10045 -28.08029 -27.47489 -26.63234 -25.98098 -24.63274 -23.17811 -22.02426 -20.38776 -20.05850 -19.94787 -18.69197 -18.53626 -18.04346 -16.94295 -16.79635 -16.03361 -15.67867 -15.06698 -14.86047 -14.60393 -14.56153 -14.32498 -14.16134 -14.05286 -13.76976 -13.50432 -13.19775 -12.84760 -12.72716 -12.49515 -12.26695 -12.14411 -11.97631 -11.79705 -11.76761 -11.52084 -11.36193 -11.20656 -11.05945 -11.03933 -10.81028 -10.75077 -10.51130 -10.09564 -10.02451 -9.89714 -9.74714 -9.45791 -9.21341 -9.12521 -9.05150 -8.60842 -8.58405 -6.76462 -5.59631 -3.00760 1.82654 1.99103 2.61130 2.65322 2.87385 3.43172 3.45598 3.47954 3.50063 4.49508 4.52444 4.64698 4.66538 4.70409 4.72628 4.93327 4.96877 5.12046 5.20981 5.27675 5.31931 5.39904 5.43064 5.53969 5.56936 5.58071 5.65894 5.70100 5.73335 5.76067 5.78762 5.82705 5.95042 5.96962 6.00552 6.07895 6.14106 6.40670 6.44079 6.44594 6.54127 6.63934 6.66810 6.73999 6.76762 6.98499 7.25876 7.51570 7.58959 7.68366 7.78580 7.92076 8.22200 8.42448 9.27766 9.88773 10.54165 11.44340 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008164 B = 0.003125 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3429.008002 B = 8957.131975 C =11511.983330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.124 4.124 4 C -0.067 4.067 5 C -0.103 4.103 6 H 0.095 0.905 7 C -0.152 4.152 8 C 0.517 3.483 9 O -0.545 6.545 10 N -0.722 5.722 11 C 0.202 3.798 12 C -0.263 4.263 13 C 0.074 3.926 14 N -0.481 5.481 15 H 0.438 0.562 16 N -0.277 5.277 17 C 0.121 3.879 18 C -0.029 4.029 19 H 0.087 0.913 20 C -0.132 4.132 21 C 0.152 3.848 22 N -0.602 5.602 23 C -0.219 4.219 24 H 0.076 0.924 25 C -0.012 4.012 26 N -0.922 5.922 27 Si 0.913 3.087 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.282 1.282 31 C 0.152 3.848 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.402 0.598 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.174 0.826 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.107 0.893 49 H 0.013 0.987 50 H 0.251 0.749 51 H 0.019 0.981 52 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.486 -4.087 6.487 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.118 4.118 3 C -0.181 4.181 4 C -0.105 4.105 5 C -0.124 4.124 6 H 0.113 0.887 7 C -0.209 4.209 8 C 0.303 3.697 9 O -0.423 6.423 10 N -0.374 5.374 11 C 0.078 3.922 12 C -0.275 4.275 13 C -0.075 4.075 14 N -0.187 5.187 15 H 0.282 0.718 16 N -0.099 5.099 17 C -0.047 4.047 18 C -0.050 4.050 19 H 0.106 0.894 20 C -0.172 4.172 21 C 0.028 3.972 22 N -0.328 5.328 23 C -0.347 4.347 24 H 0.094 0.906 25 C -0.207 4.207 26 N -0.571 5.571 27 Si 0.744 3.256 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.208 1.208 31 C 0.025 3.975 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.236 0.764 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.191 0.809 46 H 0.084 0.916 47 H 0.077 0.923 48 H 0.125 0.875 49 H 0.031 0.969 50 H 0.062 0.938 51 H 0.037 0.963 52 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -20.579 -4.550 6.036 21.923 hybrid contribution -0.424 0.604 -0.601 0.952 sum -21.002 -3.946 5.435 22.050 Atomic orbital electron populations 1.23678 0.95243 1.01721 1.03180 1.21772 0.95329 0.95781 0.98920 1.21030 1.00349 0.94366 1.02323 1.20517 1.00858 0.94179 0.94963 1.21278 0.99893 0.92518 0.98710 0.88737 1.21968 0.98967 0.98672 1.01326 1.20643 0.78136 0.87504 0.83407 1.90689 1.56126 1.63419 1.32033 1.46201 1.61743 1.19843 1.09563 1.19362 0.97721 0.83552 0.91523 1.19959 0.99572 1.09282 0.98692 1.22353 0.98405 0.99856 0.86879 1.46377 1.19803 1.39384 1.13100 0.71812 1.77541 1.02696 1.09839 1.19793 1.22255 0.95225 0.96593 0.90666 1.20784 0.91773 0.93495 0.98937 0.89433 1.23133 0.93592 0.99754 1.00674 1.21936 0.95717 0.84864 0.94711 1.44458 0.99324 1.32471 1.56546 1.19056 0.90540 1.03493 1.21628 0.90598 1.24771 0.95916 0.99425 1.00615 1.69795 1.02711 1.38609 1.45994 0.86088 0.78392 0.81606 0.79511 1.21675 1.21707 1.20766 1.21222 0.88167 0.92242 0.95862 0.88605 0.88590 0.90933 0.92079 0.91543 0.90572 0.90413 0.90877 0.91662 0.91863 0.76370 0.91213 0.90623 0.80888 0.91563 0.92346 0.87533 0.96943 0.93785 0.96311 0.95472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.57 13.89 29.02 0.40 -1.17 16 2 C -0.12 -1.00 4.93 -101.06 -0.50 -1.50 16 3 C -0.12 -0.94 9.01 36.01 0.32 -0.62 16 4 C -0.07 -0.66 4.22 -27.88 -0.12 -0.78 16 5 C -0.10 -0.97 2.71 -91.77 -0.25 -1.22 16 6 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 7 C -0.15 -1.43 8.64 37.15 0.32 -1.11 16 8 C 0.52 6.21 7.15 -10.99 -0.08 6.13 16 9 O -0.55 -8.45 15.92 5.56 0.09 -8.36 16 10 N -0.72 -7.85 5.44 -61.47 -0.33 -8.18 16 11 C 0.20 2.32 5.67 -5.19 -0.03 2.29 16 12 C -0.26 -3.17 5.47 -105.05 -0.57 -3.74 16 13 C 0.07 0.71 11.90 -17.22 -0.20 0.50 16 14 N -0.48 -5.24 7.36 30.44 0.22 -5.01 16 15 H 0.44 3.26 8.96 -182.61 -1.64 1.63 16 16 N -0.28 -4.43 12.34 33.67 0.42 -4.01 16 17 C 0.12 1.88 5.77 -82.41 -0.48 1.40 16 18 C -0.03 -0.52 3.37 -89.80 -0.30 -0.82 16 19 H 0.09 1.50 7.27 -51.93 -0.38 1.12 16 20 C -0.13 -2.64 6.53 -24.44 -0.16 -2.80 16 21 C 0.15 3.79 5.89 -2.53 -0.01 3.77 16 22 N -0.60 -15.69 3.39 -170.07 -0.58 -16.26 16 23 C -0.22 -6.18 10.27 -15.06 -0.15 -6.33 16 24 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 25 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 26 N -0.92 -27.20 10.09 55.49 0.56 -26.64 16 27 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 30 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 31 C 0.15 3.24 6.82 -3.07 -0.02 3.22 16 32 H 0.10 0.65 8.04 -52.48 -0.42 0.23 16 33 H 0.10 0.71 7.99 -52.49 -0.42 0.29 16 34 H 0.07 0.52 6.39 -51.93 -0.33 0.19 16 35 H 0.06 0.41 8.06 -51.93 -0.42 -0.01 16 36 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 37 H 0.08 0.79 7.80 -51.93 -0.41 0.39 16 38 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 39 H 0.07 0.60 5.08 -51.93 -0.26 0.34 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.59 7.57 -51.93 -0.39 0.20 16 42 H 0.40 3.95 7.88 -40.82 -0.32 3.63 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 1.00 7.70 -51.93 -0.40 0.60 16 45 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 46 H 0.07 1.38 7.89 -51.93 -0.41 0.97 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.11 2.98 5.87 -51.93 -0.30 2.67 16 49 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 50 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 51 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.03 0.61 7.67 -51.93 -0.40 0.21 16 LS Contribution 416.56 15.07 6.28 6.28 Total: -1.00 -34.26 416.56 -10.15 -44.41 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -9.85 Total: 3.73 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -1.93 Total: -3.21 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.29 Total: -60.11 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.09 Total: -8.36 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.26 -10.15 -44.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130411949.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.787 kcal (2) G-P(sol) polarization free energy of solvation -34.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds