Wall clock time and date at job start Wed Apr 1 2020 04:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50712 * 119.99796 * 2 1 4 4 C 1.50697 * 120.00144 * 179.97438 * 2 1 3 5 5 C 1.53003 * 109.47285 * 95.00249 * 4 2 1 6 6 H 1.09006 * 109.46733 * 304.99657 * 5 4 2 7 7 C 1.52994 * 109.47198 * 64.99626 * 5 4 2 8 8 C 1.50701 * 109.46951 * 185.00033 * 5 4 2 9 9 O 1.21275 * 120.00155 * 359.97438 * 8 5 4 10 10 N 1.34773 * 119.99468 * 179.97438 * 8 5 4 11 11 C 1.46502 * 119.99687 * 179.97438 * 10 8 5 12 12 C 1.50702 * 109.47122 * 180.02562 * 11 10 8 13 13 C 1.35315 * 126.04034 * 259.97845 * 12 11 10 14 14 N 1.34947 * 107.74580 * 180.02562 * 13 12 11 15 15 H 0.96998 * 126.03962 * 180.02562 * 14 13 12 16 16 N 1.40084 * 107.92515 * 359.74900 * 14 13 12 17 17 C 1.30834 * 108.20620 * 0.41869 * 16 14 13 18 18 C 1.50696 * 125.90213 * 179.85185 * 17 16 14 19 19 H 1.09000 * 110.78568 * 181.48186 * 18 17 16 20 20 C 1.55405 * 110.85075 * 304.77871 * 18 17 16 21 21 C 1.54914 * 101.66697 * 153.69831 * 20 18 17 22 22 N 1.47426 * 104.82992 * 323.07703 * 21 20 18 23 23 C 1.36936 * 125.64583 * 204.09666 * 22 21 20 24 24 H 1.07997 * 119.99931 * 180.02562 * 23 22 21 25 25 C 1.38819 * 120.00094 * 0.03301 * 23 22 21 26 26 N 1.31618 * 119.99956 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99883 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47090 * 90.00295 * 27 25 23 29 29 H 1.48500 * 109.46944 * 210.00181 * 27 25 23 30 30 H 1.48498 * 109.47226 * 330.00384 * 27 25 23 31 31 C 1.47018 * 108.70517 * 24.12623 * 22 21 20 32 32 H 1.08004 * 120.00209 * 0.02562 * 1 2 3 33 33 H 1.08002 * 119.99975 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46760 * 269.99521 * 3 2 1 35 35 H 1.08998 * 109.47185 * 29.99888 * 3 2 1 36 36 H 1.08991 * 109.46710 * 150.00110 * 3 2 1 37 37 H 1.08998 * 109.46963 * 334.99997 * 4 2 1 38 38 H 1.09001 * 109.46808 * 215.00037 * 4 2 1 39 39 H 1.08997 * 109.47463 * 300.00585 * 7 5 4 40 40 H 1.09006 * 109.47253 * 60.00350 * 7 5 4 41 41 H 1.08997 * 109.47151 * 180.02562 * 7 5 4 42 42 H 0.97006 * 120.00333 * 0.02562 * 10 8 5 43 43 H 1.08999 * 109.47190 * 60.00260 * 11 10 8 44 44 H 1.08997 * 109.47001 * 299.99673 * 11 10 8 45 45 H 1.07994 * 126.12904 * 359.97438 * 13 12 11 46 46 H 1.09000 * 110.89538 * 35.62635 * 20 18 17 47 47 H 1.09001 * 111.03900 * 271.83121 * 20 18 17 48 48 H 1.08999 * 110.37121 * 204.23438 * 21 20 18 49 49 H 1.09001 * 110.45739 * 81.96050 * 21 20 18 50 50 H 0.96998 * 120.00119 * 179.97438 * 26 25 23 51 51 H 1.09002 * 109.88241 * 118.36067 * 31 22 21 52 52 H 1.09000 * 109.88049 * 239.37196 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4363 6 1 1.5245 -1.7043 -2.0466 7 6 3.4045 -0.6532 -2.0042 8 6 3.0717 -3.0468 -1.4482 9 8 3.2251 -3.6541 -0.4097 10 7 3.4774 -3.5901 -2.6129 11 6 4.1042 -4.9142 -2.6245 12 6 4.4626 -5.2880 -4.0397 13 6 3.7546 -6.1084 -4.8501 14 7 4.4070 -6.1854 -6.0289 15 1 4.1304 -6.7027 -6.8014 16 7 5.5508 -5.3815 -5.9419 17 6 5.5861 -4.8486 -4.7476 18 6 6.6501 -3.9172 -4.2266 19 1 6.4502 -3.6423 -3.1909 20 6 8.0599 -4.5565 -4.3627 21 6 8.9651 -3.3026 -4.4540 22 7 8.1844 -2.3301 -5.2402 23 6 8.7028 -1.2916 -5.9668 24 1 8.0438 -0.6313 -6.5109 25 6 10.0754 -1.0877 -6.0042 26 7 10.8786 -1.8929 -5.3416 27 14 10.7825 0.3293 -6.9948 28 1 10.8770 1.5361 -6.1346 29 1 12.1357 -0.0362 -7.4852 30 1 9.8969 0.6147 -8.1522 31 6 6.7571 -2.6594 -5.1144 32 1 -0.5401 0.9353 -0.0004 33 1 -0.5400 -0.9353 0.0004 34 1 2.2452 1.6198 -1.0277 35 1 1.4744 2.0649 0.5138 36 1 3.0158 1.1749 0.5138 37 1 1.4385 -2.0852 0.4352 38 1 2.9741 -1.1985 0.5900 39 1 2.9385 0.3321 -1.9955 40 1 4.3074 -0.6335 -1.3938 41 1 3.6634 -0.9233 -3.0279 42 1 3.3550 -3.1041 -3.4435 43 1 3.4086 -5.6491 -2.2193 44 1 5.0074 -4.8939 -2.0147 45 1 2.8330 -6.6119 -4.5983 46 1 8.1292 -5.1553 -5.2709 47 1 8.3058 -5.1527 -3.4840 48 1 9.8967 -3.5436 -4.9658 49 1 9.1708 -2.9081 -3.4589 50 1 11.8377 -1.7506 -5.3680 51 1 6.2250 -1.8302 -4.6481 52 1 6.3356 -2.8634 -6.0986 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130411949.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:01 Heat of formation + Delta-G solvation = 45.186533 kcal Electronic energy + Delta-G solvation = -30797.040833 eV Core-core repulsion = 26797.872150 eV Total energy + Delta-G solvation = -3999.168683 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.35430 -40.85013 -39.01419 -37.74855 -35.97831 -34.89079 -33.78256 -32.72675 -31.49999 -30.90599 -29.15070 -28.73414 -27.34502 -26.85883 -26.60514 -24.00414 -23.40323 -22.06017 -21.36121 -20.86369 -20.03533 -19.21153 -18.93523 -18.83229 -17.78580 -16.97444 -16.86871 -16.52476 -16.31282 -15.75915 -15.64505 -15.51181 -15.19511 -14.91536 -14.76952 -14.51608 -14.33790 -14.05690 -13.91123 -13.73688 -13.57298 -13.39306 -13.28233 -13.00735 -12.93306 -12.85468 -12.70822 -12.41649 -12.31586 -12.13088 -12.01001 -11.92390 -11.89395 -11.78591 -11.72701 -11.63510 -11.18590 -10.83880 -10.73045 -10.29364 -9.98670 -9.86179 -9.52454 -8.86488 -7.75338 -5.19674 0.96605 1.34516 1.46781 1.49380 1.55071 1.58002 1.71743 2.02866 2.51208 2.57543 3.34000 3.55299 3.71718 3.77114 3.83768 3.91839 3.98771 4.03306 4.14872 4.17754 4.25121 4.27970 4.35868 4.46515 4.56585 4.66664 4.69295 4.71649 4.74093 4.81508 4.87942 4.90801 4.92308 5.02672 5.03766 5.05832 5.12205 5.15032 5.18347 5.22896 5.34324 5.40941 5.47817 5.52674 5.57884 5.65272 5.80203 5.81570 6.03692 6.31914 6.51079 6.63613 6.77674 7.12121 7.31568 7.79551 8.44319 9.26944 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008164 B = 0.003125 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3429.008002 B = 8957.131975 C =11511.983330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 C -0.124 4.124 4 C -0.064 4.064 5 C -0.094 4.094 6 H 0.117 0.883 7 C -0.149 4.149 8 C 0.514 3.486 9 O -0.584 6.584 10 N -0.714 5.714 11 C 0.207 3.793 12 C -0.272 4.272 13 C 0.107 3.893 14 N -0.466 5.466 15 H 0.454 0.546 16 N -0.324 5.324 17 C 0.105 3.895 18 C -0.011 4.011 19 H 0.094 0.906 20 C -0.118 4.118 21 C 0.156 3.844 22 N -0.624 5.624 23 C -0.237 4.237 24 H 0.080 0.920 25 C -0.068 4.068 26 N -0.950 5.950 27 Si 0.981 3.019 28 H -0.285 1.285 29 H -0.294 1.294 30 H -0.270 1.270 31 C 0.153 3.847 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.409 0.591 43 H 0.086 0.914 44 H 0.054 0.946 45 H 0.225 0.775 46 H 0.055 0.945 47 H 0.080 0.920 48 H 0.072 0.928 49 H -0.009 1.009 50 H 0.247 0.753 51 H 0.027 0.973 52 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.542 -4.359 5.829 25.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.130 4.130 3 C -0.181 4.181 4 C -0.102 4.102 5 C -0.115 4.115 6 H 0.135 0.865 7 C -0.206 4.206 8 C 0.302 3.698 9 O -0.464 6.464 10 N -0.365 5.365 11 C 0.083 3.917 12 C -0.284 4.284 13 C -0.043 4.043 14 N -0.173 5.173 15 H 0.301 0.699 16 N -0.147 5.147 17 C -0.062 4.062 18 C -0.032 4.032 19 H 0.113 0.887 20 C -0.157 4.157 21 C 0.031 3.969 22 N -0.350 5.350 23 C -0.366 4.366 24 H 0.098 0.902 25 C -0.260 4.260 26 N -0.600 5.600 27 Si 0.809 3.191 28 H -0.212 1.212 29 H -0.220 1.220 30 H -0.194 1.194 31 C 0.027 3.973 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.244 0.756 43 H 0.104 0.896 44 H 0.073 0.927 45 H 0.241 0.759 46 H 0.074 0.926 47 H 0.099 0.901 48 H 0.090 0.910 49 H 0.009 0.991 50 H 0.056 0.944 51 H 0.045 0.955 52 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -23.664 -4.824 5.341 24.735 hybrid contribution 0.449 0.626 -0.417 0.876 sum -23.215 -4.198 4.924 24.100 Atomic orbital electron populations 1.23834 0.94967 1.02533 1.01715 1.21737 0.95619 0.95350 1.00246 1.21035 1.00102 0.94231 1.02689 1.20436 1.00076 0.94816 0.94834 1.21262 1.00421 0.90897 0.98959 0.86520 1.21949 0.98338 0.99475 1.00871 1.21073 0.77657 0.88087 0.82989 1.90672 1.57827 1.64582 1.33366 1.46171 1.60933 1.19779 1.09582 1.19287 0.97286 0.84097 0.91048 1.19933 0.99033 1.10374 0.99062 1.23023 0.98678 0.97558 0.85053 1.46348 1.18404 1.38270 1.14316 0.69893 1.77437 1.05388 1.11577 1.20343 1.21853 0.95788 0.97079 0.91514 1.20497 0.91596 0.92354 0.98713 0.88732 1.22912 0.94060 0.97586 1.01164 1.21690 0.95576 0.86770 0.92833 1.44758 1.01521 1.32305 1.56374 1.19441 0.91081 1.04197 1.21847 0.90198 1.25644 0.96300 1.02127 1.01974 1.70058 1.02504 1.40139 1.47284 0.85039 0.77304 0.78447 0.78312 1.21164 1.22024 1.19443 1.21308 0.85642 0.94126 0.96230 0.87347 0.88235 0.90430 0.91123 0.92265 0.91437 0.92202 0.89463 0.93460 0.91763 0.75567 0.89599 0.92747 0.75850 0.92577 0.90105 0.91032 0.99099 0.94357 0.95519 0.96275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.63 13.89 67.79 0.94 -1.68 16 2 C -0.13 -2.03 4.93 -16.48 -0.08 -2.11 16 3 C -0.12 -1.73 9.01 71.24 0.64 -1.09 16 4 C -0.06 -1.22 4.22 29.85 0.13 -1.09 16 5 C -0.09 -1.67 2.71 -11.54 -0.03 -1.71 16 6 H 0.12 1.58 8.14 -2.38 -0.02 1.56 16 7 C -0.15 -2.67 8.64 71.98 0.62 -2.05 16 8 C 0.51 11.90 7.15 87.66 0.63 12.53 16 9 O -0.58 -18.02 15.92 -3.02 -0.05 -18.07 16 10 N -0.71 -14.33 5.44 -466.79 -2.54 -16.87 16 11 C 0.21 4.34 5.67 85.63 0.49 4.83 16 12 C -0.27 -5.83 5.47 -20.14 -0.11 -5.94 16 13 C 0.11 1.56 11.90 83.54 0.99 2.56 16 14 N -0.47 -8.63 7.36 -57.59 -0.42 -9.06 16 15 H 0.45 5.19 8.96 -213.33 -1.91 3.28 16 16 N -0.32 -9.89 12.34 -47.39 -0.58 -10.47 16 17 C 0.10 3.11 5.77 43.10 0.25 3.36 16 18 C -0.01 -0.39 3.37 -10.26 -0.03 -0.42 16 19 H 0.09 3.22 7.27 -2.39 -0.02 3.21 16 20 C -0.12 -4.80 6.53 32.08 0.21 -4.59 16 21 C 0.16 8.11 5.89 86.86 0.51 8.62 16 22 N -0.62 -33.44 3.39 -691.98 -2.35 -35.79 16 23 C -0.24 -13.66 10.27 84.04 0.86 -12.80 16 24 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 25 C -0.07 -3.96 5.49 84.86 0.47 -3.50 16 26 N -0.95 -58.07 10.09 21.65 0.22 -57.85 16 27 Si 0.98 46.52 29.55 68.60 2.03 48.55 16 28 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 29 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 30 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 31 C 0.15 6.59 6.82 86.73 0.59 7.18 16 32 H 0.11 1.20 8.04 -2.91 -0.02 1.18 16 33 H 0.10 1.27 7.99 -2.91 -0.02 1.25 16 34 H 0.08 0.98 6.39 -2.39 -0.02 0.97 16 35 H 0.07 0.84 8.06 -2.39 -0.02 0.82 16 36 H 0.06 0.90 8.08 -2.39 -0.02 0.88 16 37 H 0.07 1.39 7.80 -2.39 -0.02 1.37 16 38 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 39 H 0.09 1.31 5.08 -2.39 -0.01 1.30 16 40 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.06 1.13 7.57 -2.39 -0.02 1.11 16 42 H 0.41 7.17 7.88 -92.70 -0.73 6.44 16 43 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.05 1.39 7.70 -2.39 -0.02 1.37 16 45 H 0.23 0.98 8.06 -2.91 -0.02 0.95 16 46 H 0.06 2.39 7.89 -2.39 -0.02 2.37 16 47 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 48 H 0.07 4.22 5.87 -2.39 -0.01 4.21 16 49 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 50 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 51 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 52 H 0.02 0.86 7.67 -2.39 -0.02 0.84 16 Total: -1.00 -77.68 416.56 1.66 -76.02 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: -1.71 Total: 21.45 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 7.07 Total: 2.10 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -5.68 Total: -130.05 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.05 Total: -18.07 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -77.68 1.66 -76.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130411949.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.207 kcal (2) G-P(sol) polarization free energy of solvation -77.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds