Wall clock time and date at job start Wed Apr 1 2020 04:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99964 * 2 1 4 4 C 1.50700 * 119.99999 * 179.97438 * 2 1 3 5 5 C 1.53005 * 109.46852 * 95.00352 * 4 2 1 6 6 H 1.08997 * 109.47029 * 305.00240 * 5 4 2 7 7 C 1.52996 * 109.46731 * 65.00118 * 5 4 2 8 8 C 1.50692 * 109.47272 * 185.00296 * 5 4 2 9 9 O 1.21289 * 119.99890 * 359.97438 * 8 5 4 10 10 N 1.34774 * 120.00261 * 180.02562 * 8 5 4 11 11 C 1.46500 * 120.00082 * 179.97438 * 10 8 5 12 12 C 1.50705 * 109.47169 * 179.97438 * 11 10 8 13 13 C 1.35313 * 126.04209 * 260.14446 * 12 11 10 14 14 N 1.34953 * 107.74485 * 180.27076 * 13 12 11 15 15 H 0.97000 * 126.03486 * 179.74758 * 14 13 12 16 16 N 1.40085 * 107.92392 * 359.75378 * 14 13 12 17 17 C 1.30834 * 108.20595 * 359.97438 * 16 14 13 18 18 C 1.50705 * 125.89692 * 179.97438 * 17 16 14 19 19 H 1.09008 * 110.77748 * 178.23622 * 18 17 16 20 20 C 1.55153 * 110.72354 * 54.99718 * 18 17 16 21 21 C 1.55131 * 101.48647 * 205.96741 * 20 18 17 22 22 N 1.47426 * 104.71847 * 37.29562 * 21 20 18 23 23 C 1.36945 * 125.64675 * 155.81671 * 22 21 20 24 24 H 1.07997 * 119.99756 * 179.68946 * 23 22 21 25 25 C 1.38805 * 119.99878 * 359.68852 * 23 22 21 26 26 N 1.31624 * 120.00257 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99929 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47187 * 179.97438 * 27 25 23 29 29 H 1.48494 * 109.47141 * 300.00154 * 27 25 23 30 30 H 1.48498 * 109.47018 * 60.00200 * 27 25 23 31 31 C 1.47026 * 108.70569 * 335.55014 * 22 21 20 32 32 H 1.07996 * 119.99925 * 180.02562 * 1 2 3 33 33 H 1.08000 * 119.99873 * 0.02562 * 1 2 3 34 34 H 1.09002 * 109.47322 * 269.99401 * 3 2 1 35 35 H 1.09000 * 109.47619 * 29.99277 * 3 2 1 36 36 H 1.08997 * 109.47311 * 149.99672 * 3 2 1 37 37 H 1.09002 * 109.46871 * 335.00863 * 4 2 1 38 38 H 1.08996 * 109.47143 * 215.00390 * 4 2 1 39 39 H 1.08997 * 109.47265 * 60.00266 * 7 5 4 40 40 H 1.09008 * 109.47061 * 180.02562 * 7 5 4 41 41 H 1.08998 * 109.47373 * 299.99777 * 7 5 4 42 42 H 0.97004 * 120.00036 * 0.02562 * 10 8 5 43 43 H 1.09005 * 109.46828 * 60.00564 * 11 10 8 44 44 H 1.08997 * 109.47512 * 300.00008 * 11 10 8 45 45 H 1.08001 * 126.12703 * 0.03190 * 13 12 11 46 46 H 1.08999 * 111.00098 * 324.21115 * 20 18 17 47 47 H 1.08999 * 111.00620 * 88.02293 * 20 18 17 48 48 H 1.08994 * 110.50226 * 278.45550 * 21 20 18 49 49 H 1.09001 * 110.34274 * 156.05220 * 21 20 18 50 50 H 0.97001 * 119.99885 * 179.97438 * 26 25 23 51 51 H 1.09003 * 109.87851 * 120.70448 * 31 22 21 52 52 H 1.08997 * 109.87950 * 241.87026 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4275 -1.6845 -1.4363 6 1 1.5246 -1.7041 -2.0467 7 6 3.4046 -0.6531 -2.0041 8 6 3.0716 -3.0467 -1.4484 9 8 3.2250 -3.6542 -0.4099 10 7 3.4782 -3.5896 -2.6131 11 6 4.1050 -4.9137 -2.6247 12 6 4.4633 -5.2874 -4.0400 13 6 3.7536 -6.1052 -4.8515 14 7 4.4096 -6.1875 -6.0281 15 1 4.1348 -6.7074 -6.7994 16 7 5.5575 -5.3896 -5.9384 17 6 5.5866 -4.8476 -4.7479 18 6 6.6508 -3.9163 -4.2268 19 1 6.4150 -3.5876 -3.2146 20 6 6.8260 -2.6990 -5.1726 21 6 8.2955 -2.2934 -4.8851 22 7 9.0066 -3.5710 -4.6966 23 6 10.3487 -3.7720 -4.8805 24 1 10.7765 -4.7490 -4.7109 25 6 11.1591 -2.7201 -5.2848 26 7 10.6377 -1.5292 -5.4909 27 14 12.9899 -2.9941 -5.5349 28 1 13.6265 -1.7232 -5.9644 29 1 13.6011 -3.4484 -4.2601 30 1 13.1973 -4.0288 -6.5797 31 6 8.0375 -4.5919 -4.2723 32 1 -0.5400 -0.9353 0.0004 33 1 -0.5400 0.9353 -0.0004 34 1 2.2453 1.6197 -1.0277 35 1 1.4744 2.0648 0.5137 36 1 3.0159 1.1748 0.5139 37 1 1.4385 -2.0853 0.4351 38 1 2.9742 -1.1986 0.5900 39 1 4.3074 -0.6335 -1.3937 40 1 3.6636 -0.9231 -3.0279 41 1 2.9387 0.3322 -1.9954 42 1 3.3566 -3.1033 -3.4435 43 1 3.4089 -5.6487 -2.2204 44 1 5.0077 -4.8939 -2.0142 45 1 2.8300 -6.6057 -4.6011 46 1 6.6945 -2.9915 -6.2144 47 1 6.1406 -1.8947 -4.9054 48 1 8.3546 -1.6892 -3.9798 49 1 8.7113 -1.7494 -5.7332 50 1 11.2041 -0.7940 -5.7731 51 1 8.0265 -5.4131 -4.9891 52 1 8.3011 -4.9646 -3.2825 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130411951.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:15 Heat of formation + Delta-G solvation = 67.685051 kcal Electronic energy + Delta-G solvation = -30682.137098 eV Core-core repulsion = 26683.944024 eV Total energy + Delta-G solvation = -3998.193074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.35591 -39.94186 -37.27016 -37.03957 -35.01215 -33.16911 -32.95312 -31.24969 -30.54635 -29.10006 -28.11371 -27.44856 -26.66398 -25.99641 -24.62877 -23.20558 -22.02229 -20.36980 -20.12214 -19.92938 -18.69060 -18.56473 -18.04575 -16.96594 -16.78954 -16.04074 -15.70451 -15.06726 -14.87809 -14.62319 -14.52017 -14.39756 -14.14645 -14.07081 -13.78787 -13.51154 -13.22713 -12.86860 -12.72893 -12.50461 -12.25565 -12.19192 -11.98447 -11.80047 -11.79225 -11.51809 -11.40261 -11.23330 -11.09013 -11.03751 -10.79096 -10.74174 -10.50881 -10.10749 -10.03513 -9.91590 -9.73604 -9.45063 -9.23953 -9.12982 -9.06527 -8.60703 -8.57823 -6.75280 -5.58558 -2.99577 1.82542 1.96558 2.60729 2.63393 2.87435 3.43492 3.45190 3.48916 3.50385 4.46800 4.53953 4.61652 4.66381 4.69136 4.70560 4.89880 4.94027 5.11147 5.18538 5.27156 5.29520 5.36032 5.42760 5.54308 5.55172 5.57778 5.61077 5.67372 5.70783 5.73887 5.78134 5.80044 5.95103 5.96801 5.98808 6.07515 6.08867 6.38453 6.42153 6.43266 6.54167 6.62281 6.64106 6.74347 6.78641 7.00141 7.25969 7.49524 7.58128 7.69252 7.78698 7.91889 8.20380 8.43344 9.29113 9.89897 10.55133 11.45297 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009987 B = 0.002730 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.901235 B =10254.862472 C =12290.516131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.124 4.124 4 C -0.068 4.068 5 C -0.103 4.103 6 H 0.094 0.906 7 C -0.152 4.152 8 C 0.516 3.484 9 O -0.544 6.544 10 N -0.722 5.722 11 C 0.202 3.798 12 C -0.262 4.262 13 C 0.074 3.926 14 N -0.481 5.481 15 H 0.438 0.562 16 N -0.277 5.277 17 C 0.121 3.879 18 C -0.028 4.028 19 H 0.087 0.913 20 C -0.130 4.130 21 C 0.153 3.847 22 N -0.602 5.602 23 C -0.218 4.218 24 H 0.076 0.924 25 C -0.013 4.013 26 N -0.924 5.924 27 Si 0.914 3.086 28 H -0.290 1.290 29 H -0.286 1.286 30 H -0.286 1.286 31 C 0.148 3.852 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.401 0.599 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.174 0.826 46 H 0.066 0.934 47 H 0.056 0.944 48 H 0.012 0.988 49 H 0.108 0.892 50 H 0.252 0.748 51 H 0.029 0.971 52 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.648 -0.792 5.065 24.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.119 4.119 3 C -0.180 4.180 4 C -0.105 4.105 5 C -0.124 4.124 6 H 0.113 0.887 7 C -0.209 4.209 8 C 0.302 3.698 9 O -0.421 6.421 10 N -0.374 5.374 11 C 0.078 3.922 12 C -0.275 4.275 13 C -0.075 4.075 14 N -0.187 5.187 15 H 0.282 0.718 16 N -0.099 5.099 17 C -0.048 4.048 18 C -0.049 4.049 19 H 0.106 0.894 20 C -0.170 4.170 21 C 0.028 3.972 22 N -0.328 5.328 23 C -0.347 4.347 24 H 0.094 0.906 25 C -0.208 4.208 26 N -0.573 5.573 27 Si 0.745 3.255 28 H -0.216 1.216 29 H -0.213 1.213 30 H -0.212 1.212 31 C 0.022 3.978 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.236 0.764 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.191 0.809 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.030 0.970 49 H 0.125 0.875 50 H 0.062 0.938 51 H 0.047 0.953 52 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -22.737 -1.252 4.623 23.236 hybrid contribution 0.167 -0.326 -0.194 0.415 sum -22.569 -1.578 4.429 23.054 Atomic orbital electron populations 1.23683 0.95246 1.01734 1.03111 1.21771 0.95329 0.95772 0.98981 1.21026 1.00364 0.94377 1.02278 1.20519 1.00882 0.94191 0.94949 1.21272 0.99874 0.92508 0.98735 0.88740 1.21970 0.99025 0.98701 1.01236 1.20649 0.78186 0.87522 0.83436 1.90700 1.56033 1.63385 1.32026 1.46199 1.61766 1.19872 1.09516 1.19377 0.97772 0.83497 0.91563 1.19958 0.99676 1.09290 0.98554 1.22355 0.98411 0.99857 0.86883 1.46379 1.19426 1.39554 1.13311 0.71815 1.77541 1.02344 1.09902 1.20074 1.22272 0.95328 0.96392 0.90777 1.20747 0.91447 0.93702 0.99001 0.89435 1.23105 1.00486 0.94956 0.98405 1.21987 0.85605 0.88357 1.01265 1.44465 1.03659 1.05459 1.79261 1.19031 0.81818 0.95680 1.38126 0.90629 1.24761 0.98249 0.95578 1.02174 1.69778 1.33470 1.00534 1.53477 0.86153 0.84760 0.76679 0.77927 1.21608 1.21261 1.21249 1.21268 0.86959 0.92573 0.97025 0.88583 0.88599 0.90966 0.92071 0.91540 0.90557 0.90397 0.91640 0.91934 0.90866 0.76449 0.91202 0.90533 0.80894 0.91554 0.92555 0.96999 0.87471 0.93772 0.95331 0.96104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.49 13.89 29.01 0.40 -1.09 16 2 C -0.12 -0.95 4.93 -101.07 -0.50 -1.45 16 3 C -0.12 -0.87 9.01 36.00 0.32 -0.55 16 4 C -0.07 -0.63 4.22 -27.88 -0.12 -0.75 16 5 C -0.10 -0.92 2.71 -91.77 -0.25 -1.16 16 6 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 7 C -0.15 -1.29 8.64 37.16 0.32 -0.97 16 8 C 0.52 6.02 7.15 -10.99 -0.08 5.94 16 9 O -0.54 -8.36 15.92 5.55 0.09 -8.27 16 10 N -0.72 -7.57 5.44 -61.47 -0.33 -7.90 16 11 C 0.20 2.32 5.65 -5.19 -0.03 2.29 16 12 C -0.26 -3.16 5.47 -105.05 -0.57 -3.74 16 13 C 0.07 0.71 11.90 -17.22 -0.20 0.50 16 14 N -0.48 -5.24 7.36 30.45 0.22 -5.01 16 15 H 0.44 3.27 8.96 -182.61 -1.64 1.63 16 16 N -0.28 -4.42 12.33 33.67 0.42 -4.01 16 17 C 0.12 1.87 5.76 -82.40 -0.47 1.40 16 18 C -0.03 -0.50 3.36 -89.94 -0.30 -0.81 16 19 H 0.09 1.49 7.32 -51.92 -0.38 1.11 16 20 C -0.13 -2.51 6.53 -24.46 -0.16 -2.67 16 21 C 0.15 3.75 5.91 -2.41 -0.01 3.74 16 22 N -0.60 -15.90 3.39 -169.93 -0.58 -16.48 16 23 C -0.22 -6.25 10.27 -15.06 -0.15 -6.40 16 24 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 25 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 26 N -0.92 -27.23 10.08 55.49 0.56 -26.67 16 27 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 31 C 0.15 3.28 6.83 -3.06 -0.02 3.26 16 32 H 0.10 0.68 7.99 -52.49 -0.42 0.26 16 33 H 0.10 0.62 8.04 -52.49 -0.42 0.19 16 34 H 0.07 0.47 6.39 -51.93 -0.33 0.13 16 35 H 0.06 0.38 8.06 -51.93 -0.42 -0.03 16 36 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 37 H 0.08 0.77 7.80 -51.93 -0.41 0.37 16 38 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.51 7.56 -51.92 -0.39 0.12 16 41 H 0.07 0.53 5.08 -51.93 -0.26 0.27 16 42 H 0.40 3.67 7.88 -40.82 -0.32 3.35 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 1.03 7.77 -51.93 -0.40 0.62 16 45 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 46 H 0.07 1.35 7.88 -51.93 -0.41 0.94 16 47 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.11 2.97 5.86 -51.93 -0.30 2.66 16 50 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 51 H 0.03 0.66 7.68 -51.93 -0.40 0.26 16 52 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 416.61 15.07 6.28 6.28 Total: -1.00 -34.54 416.61 -10.15 -44.69 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -9.85 Total: 2.81 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -1.93 Total: -2.92 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.29 Total: -60.07 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.09 Total: -8.27 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.54 -10.15 -44.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130411951.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.374 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds