Wall clock time and date at job start Wed Apr 1 2020 04:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99964 * 2 1 4 4 C 1.50700 * 119.99999 * 179.97438 * 2 1 3 5 5 C 1.53005 * 109.46852 * 95.00352 * 4 2 1 6 6 H 1.08997 * 109.47029 * 305.00240 * 5 4 2 7 7 C 1.52996 * 109.46731 * 65.00118 * 5 4 2 8 8 C 1.50692 * 109.47272 * 185.00296 * 5 4 2 9 9 O 1.21289 * 119.99890 * 359.97438 * 8 5 4 10 10 N 1.34774 * 120.00261 * 180.02562 * 8 5 4 11 11 C 1.46500 * 120.00082 * 179.97438 * 10 8 5 12 12 C 1.50705 * 109.47169 * 179.97438 * 11 10 8 13 13 C 1.35313 * 126.04209 * 260.14446 * 12 11 10 14 14 N 1.34953 * 107.74485 * 180.27076 * 13 12 11 15 15 H 0.97000 * 126.03486 * 179.74758 * 14 13 12 16 16 N 1.40085 * 107.92392 * 359.75378 * 14 13 12 17 17 C 1.30834 * 108.20595 * 359.97438 * 16 14 13 18 18 C 1.50705 * 125.89692 * 179.97438 * 17 16 14 19 19 H 1.09008 * 110.77748 * 178.23622 * 18 17 16 20 20 C 1.55153 * 110.72354 * 54.99718 * 18 17 16 21 21 C 1.55131 * 101.48647 * 205.96741 * 20 18 17 22 22 N 1.47426 * 104.71847 * 37.29562 * 21 20 18 23 23 C 1.36945 * 125.64675 * 155.81671 * 22 21 20 24 24 H 1.07997 * 119.99756 * 179.68946 * 23 22 21 25 25 C 1.38805 * 119.99878 * 359.68852 * 23 22 21 26 26 N 1.31624 * 120.00257 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99929 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47187 * 179.97438 * 27 25 23 29 29 H 1.48494 * 109.47141 * 300.00154 * 27 25 23 30 30 H 1.48498 * 109.47018 * 60.00200 * 27 25 23 31 31 C 1.47026 * 108.70569 * 335.55014 * 22 21 20 32 32 H 1.07996 * 119.99925 * 180.02562 * 1 2 3 33 33 H 1.08000 * 119.99873 * 0.02562 * 1 2 3 34 34 H 1.09002 * 109.47322 * 269.99401 * 3 2 1 35 35 H 1.09000 * 109.47619 * 29.99277 * 3 2 1 36 36 H 1.08997 * 109.47311 * 149.99672 * 3 2 1 37 37 H 1.09002 * 109.46871 * 335.00863 * 4 2 1 38 38 H 1.08996 * 109.47143 * 215.00390 * 4 2 1 39 39 H 1.08997 * 109.47265 * 60.00266 * 7 5 4 40 40 H 1.09008 * 109.47061 * 180.02562 * 7 5 4 41 41 H 1.08998 * 109.47373 * 299.99777 * 7 5 4 42 42 H 0.97004 * 120.00036 * 0.02562 * 10 8 5 43 43 H 1.09005 * 109.46828 * 60.00564 * 11 10 8 44 44 H 1.08997 * 109.47512 * 300.00008 * 11 10 8 45 45 H 1.08001 * 126.12703 * 0.03190 * 13 12 11 46 46 H 1.08999 * 111.00098 * 324.21115 * 20 18 17 47 47 H 1.08999 * 111.00620 * 88.02293 * 20 18 17 48 48 H 1.08994 * 110.50226 * 278.45550 * 21 20 18 49 49 H 1.09001 * 110.34274 * 156.05220 * 21 20 18 50 50 H 0.97001 * 119.99885 * 179.97438 * 26 25 23 51 51 H 1.09003 * 109.87851 * 120.70448 * 31 22 21 52 52 H 1.08997 * 109.87950 * 241.87026 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4275 -1.6845 -1.4363 6 1 1.5246 -1.7041 -2.0467 7 6 3.4046 -0.6531 -2.0041 8 6 3.0716 -3.0467 -1.4484 9 8 3.2250 -3.6542 -0.4099 10 7 3.4782 -3.5896 -2.6131 11 6 4.1050 -4.9137 -2.6247 12 6 4.4633 -5.2874 -4.0400 13 6 3.7536 -6.1052 -4.8515 14 7 4.4096 -6.1875 -6.0281 15 1 4.1348 -6.7074 -6.7994 16 7 5.5575 -5.3896 -5.9384 17 6 5.5866 -4.8476 -4.7479 18 6 6.6508 -3.9163 -4.2268 19 1 6.4150 -3.5876 -3.2146 20 6 6.8260 -2.6990 -5.1726 21 6 8.2955 -2.2934 -4.8851 22 7 9.0066 -3.5710 -4.6966 23 6 10.3487 -3.7720 -4.8805 24 1 10.7765 -4.7490 -4.7109 25 6 11.1591 -2.7201 -5.2848 26 7 10.6377 -1.5292 -5.4909 27 14 12.9899 -2.9941 -5.5349 28 1 13.6265 -1.7232 -5.9644 29 1 13.6011 -3.4484 -4.2601 30 1 13.1973 -4.0288 -6.5797 31 6 8.0375 -4.5919 -4.2723 32 1 -0.5400 -0.9353 0.0004 33 1 -0.5400 0.9353 -0.0004 34 1 2.2453 1.6197 -1.0277 35 1 1.4744 2.0648 0.5137 36 1 3.0159 1.1748 0.5139 37 1 1.4385 -2.0853 0.4351 38 1 2.9742 -1.1986 0.5900 39 1 4.3074 -0.6335 -1.3937 40 1 3.6636 -0.9231 -3.0279 41 1 2.9387 0.3322 -1.9954 42 1 3.3566 -3.1033 -3.4435 43 1 3.4089 -5.6487 -2.2204 44 1 5.0077 -4.8939 -2.0142 45 1 2.8300 -6.6057 -4.6011 46 1 6.6945 -2.9915 -6.2144 47 1 6.1406 -1.8947 -4.9054 48 1 8.3546 -1.6892 -3.9798 49 1 8.7113 -1.7494 -5.7332 50 1 11.2041 -0.7940 -5.7731 51 1 8.0265 -5.4131 -4.9891 52 1 8.3011 -4.9646 -3.2825 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130411951.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:13 Heat of formation + Delta-G solvation = 45.103992 kcal Electronic energy + Delta-G solvation = -30683.116287 eV Core-core repulsion = 26683.944024 eV Total energy + Delta-G solvation = -3999.172262 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.35507 -40.84092 -39.02187 -37.73708 -35.97964 -34.90065 -33.76918 -32.72720 -31.50061 -30.89832 -29.13386 -28.71723 -27.33779 -26.85603 -26.61515 -23.99379 -23.40366 -22.05243 -21.37056 -20.85336 -20.03886 -19.20113 -18.92782 -18.84440 -17.77861 -16.95043 -16.88354 -16.51760 -16.31158 -15.77153 -15.64704 -15.49809 -15.19397 -14.92380 -14.74668 -14.49555 -14.36442 -14.06067 -13.89245 -13.73277 -13.54793 -13.39675 -13.28457 -13.01262 -12.93870 -12.82824 -12.68594 -12.40281 -12.32104 -12.10641 -12.04992 -11.90922 -11.89237 -11.77490 -11.72498 -11.63748 -11.17623 -10.83055 -10.73542 -10.29444 -9.98417 -9.85116 -9.52312 -8.87489 -7.76253 -5.20844 0.96643 1.35408 1.45479 1.49373 1.54867 1.56091 1.72942 2.02942 2.49836 2.57821 3.32038 3.55289 3.73088 3.76994 3.84595 3.93497 4.00075 4.03733 4.15061 4.17320 4.26471 4.29289 4.35904 4.48170 4.56779 4.68146 4.69895 4.72522 4.76073 4.81459 4.88496 4.92006 4.94079 5.04142 5.05320 5.06529 5.13463 5.14809 5.20203 5.24475 5.33162 5.43528 5.46049 5.53121 5.58036 5.67367 5.81283 5.81810 6.04739 6.32347 6.51088 6.65611 6.77761 7.11936 7.33449 7.78465 8.42824 9.25191 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009987 B = 0.002730 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.901235 B =10254.862472 C =12290.516131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 C -0.124 4.124 4 C -0.065 4.065 5 C -0.094 4.094 6 H 0.117 0.883 7 C -0.150 4.150 8 C 0.513 3.487 9 O -0.586 6.586 10 N -0.712 5.712 11 C 0.207 3.793 12 C -0.272 4.272 13 C 0.107 3.893 14 N -0.466 5.466 15 H 0.454 0.546 16 N -0.324 5.324 17 C 0.105 3.895 18 C -0.009 4.009 19 H 0.095 0.905 20 C -0.111 4.111 21 C 0.155 3.845 22 N -0.624 5.624 23 C -0.242 4.242 24 H 0.075 0.925 25 C -0.066 4.066 26 N -0.947 5.947 27 Si 0.981 3.019 28 H -0.290 1.290 29 H -0.279 1.279 30 H -0.279 1.279 31 C 0.146 3.854 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.410 0.590 43 H 0.084 0.916 44 H 0.051 0.949 45 H 0.225 0.775 46 H 0.056 0.944 47 H 0.089 0.911 48 H -0.008 1.008 49 H 0.074 0.926 50 H 0.248 0.752 51 H 0.018 0.982 52 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.231 -1.425 4.515 26.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.129 4.129 3 C -0.180 4.180 4 C -0.103 4.103 5 C -0.115 4.115 6 H 0.135 0.865 7 C -0.207 4.207 8 C 0.301 3.699 9 O -0.467 6.467 10 N -0.363 5.363 11 C 0.083 3.917 12 C -0.284 4.284 13 C -0.043 4.043 14 N -0.173 5.173 15 H 0.301 0.699 16 N -0.147 5.147 17 C -0.063 4.063 18 C -0.030 4.030 19 H 0.113 0.887 20 C -0.150 4.150 21 C 0.030 3.970 22 N -0.350 5.350 23 C -0.371 4.371 24 H 0.093 0.907 25 C -0.258 4.258 26 N -0.596 5.596 27 Si 0.809 3.191 28 H -0.215 1.215 29 H -0.205 1.205 30 H -0.205 1.205 31 C 0.020 3.980 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.246 0.754 43 H 0.103 0.897 44 H 0.070 0.930 45 H 0.241 0.759 46 H 0.075 0.925 47 H 0.107 0.893 48 H 0.010 0.990 49 H 0.092 0.908 50 H 0.058 0.942 51 H 0.036 0.964 52 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -25.337 -1.897 4.039 25.727 hybrid contribution 0.915 -0.211 -0.032 0.940 sum -24.422 -2.108 4.008 24.838 Atomic orbital electron populations 1.23831 0.95000 1.02494 1.01794 1.21738 0.95590 0.95366 1.00186 1.21033 1.00070 0.94134 1.02789 1.20441 1.00035 0.94798 0.94975 1.21261 1.00529 0.90842 0.98876 0.86463 1.21968 0.98284 0.99368 1.01095 1.21130 0.77645 0.88165 0.82970 1.90683 1.57841 1.64637 1.33492 1.46135 1.60886 1.19644 1.09644 1.19260 0.97160 0.84258 0.91022 1.19929 0.99180 1.10383 0.98886 1.23020 0.98721 0.97523 0.85061 1.46350 1.18014 1.38456 1.14520 0.69892 1.77437 1.05007 1.11608 1.20659 1.21864 0.95818 0.96960 0.91609 1.20448 0.90099 0.93286 0.99174 0.88700 1.22869 0.97298 0.96566 0.98259 1.21785 0.88768 0.87589 0.98857 1.44775 1.03824 1.06967 1.79470 1.19385 0.83404 0.95907 1.38391 0.90690 1.25622 1.02628 0.95403 1.02146 1.70034 1.34627 1.01044 1.53923 0.85117 0.79416 0.76558 0.78020 1.21538 1.20481 1.20464 1.21362 0.88708 0.91839 0.96086 0.88343 0.87334 0.90225 0.91198 0.92261 0.91645 0.92249 0.93404 0.91279 0.89405 0.75371 0.89743 0.93049 0.75864 0.92515 0.89268 0.98973 0.90830 0.94224 0.96427 0.96433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.49 13.89 67.78 0.94 -1.55 16 2 C -0.13 -1.90 4.93 -16.49 -0.08 -1.98 16 3 C -0.12 -1.58 9.01 71.23 0.64 -0.94 16 4 C -0.06 -1.19 4.22 29.85 0.13 -1.06 16 5 C -0.09 -1.55 2.71 -11.54 -0.03 -1.58 16 6 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 7 C -0.15 -2.34 8.64 71.98 0.62 -1.72 16 8 C 0.51 11.48 7.15 87.65 0.63 12.11 16 9 O -0.59 -18.03 15.92 -3.06 -0.05 -18.07 16 10 N -0.71 -13.60 5.44 -466.78 -2.54 -16.14 16 11 C 0.21 4.38 5.65 85.63 0.48 4.86 16 12 C -0.27 -5.84 5.47 -20.14 -0.11 -5.95 16 13 C 0.11 1.57 11.90 83.54 0.99 2.56 16 14 N -0.47 -8.65 7.36 -57.59 -0.42 -9.07 16 15 H 0.45 5.20 8.96 -213.33 -1.91 3.29 16 16 N -0.32 -9.88 12.33 -47.38 -0.58 -10.47 16 17 C 0.10 3.11 5.76 43.10 0.25 3.36 16 18 C -0.01 -0.33 3.36 -10.35 -0.03 -0.37 16 19 H 0.09 3.23 7.32 -2.38 -0.02 3.21 16 20 C -0.11 -4.28 6.53 32.06 0.21 -4.07 16 21 C 0.15 7.90 5.91 86.93 0.51 8.42 16 22 N -0.62 -34.14 3.39 -691.55 -2.35 -36.49 16 23 C -0.24 -14.29 10.27 84.03 0.86 -13.43 16 24 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 25 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 26 N -0.95 -57.59 10.08 21.65 0.22 -57.37 16 27 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 28 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 29 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 30 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 31 C 0.15 6.63 6.83 86.73 0.59 7.23 16 32 H 0.10 1.20 7.99 -2.91 -0.02 1.18 16 33 H 0.11 1.12 8.04 -2.91 -0.02 1.10 16 34 H 0.08 0.88 6.39 -2.39 -0.02 0.86 16 35 H 0.07 0.76 8.06 -2.39 -0.02 0.74 16 36 H 0.06 0.83 8.08 -2.39 -0.02 0.81 16 37 H 0.06 1.32 7.80 -2.39 -0.02 1.30 16 38 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 39 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 0.99 7.56 -2.38 -0.02 0.97 16 41 H 0.09 1.12 5.08 -2.39 -0.01 1.10 16 42 H 0.41 6.42 7.88 -92.71 -0.73 5.69 16 43 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.05 1.36 7.77 -2.39 -0.02 1.34 16 45 H 0.22 0.99 8.06 -2.91 -0.02 0.97 16 46 H 0.06 2.31 7.88 -2.39 -0.02 2.29 16 47 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 48 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 49 H 0.07 4.26 5.86 -2.39 -0.01 4.25 16 50 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 51 H 0.02 0.84 7.68 -2.39 -0.02 0.82 16 52 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -78.88 416.61 1.66 -77.22 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -1.71 Total: 18.78 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 7.07 Total: 2.52 kcal Atomic # 7 Polarization: -123.86 SS G_CDS: -5.68 Total: -129.54 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.05 Total: -18.07 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -78.88 1.66 -77.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130411951.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.325 kcal (2) G-P(sol) polarization free energy of solvation -78.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds