Wall clock time and date at job start Wed Apr 1 2020 05:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47036 * 2 1 4 4 C 1.53003 * 109.46906 * 239.99935 * 2 1 3 5 5 C 1.50701 * 109.46951 * 64.99950 * 4 2 1 6 6 O 1.21275 * 120.00155 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99468 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99687 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.47122 * 180.02562 * 8 7 5 10 10 C 1.35315 * 126.04034 * 259.97845 * 9 8 7 11 11 N 1.34947 * 107.74580 * 180.02562 * 10 9 8 12 12 H 0.96998 * 126.03962 * 180.02562 * 11 10 9 13 13 N 1.40084 * 107.92515 * 359.74900 * 11 10 9 14 14 C 1.30834 * 108.20620 * 0.41869 * 13 11 10 15 15 C 1.50696 * 125.90213 * 179.85185 * 14 13 11 16 16 H 1.09000 * 110.78568 * 181.48186 * 15 14 13 17 17 C 1.55405 * 110.85075 * 304.77871 * 15 14 13 18 18 C 1.54914 * 101.66697 * 153.69831 * 17 15 14 19 19 N 1.47426 * 104.82992 * 323.07703 * 18 17 15 20 20 C 1.36936 * 125.64583 * 204.09666 * 19 18 17 21 21 H 1.07997 * 119.99931 * 180.02562 * 20 19 18 22 22 C 1.38819 * 120.00094 * 0.03301 * 20 19 18 23 23 N 1.31618 * 119.99956 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99883 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47048 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46969 * 120.00174 * 24 22 20 27 27 H 1.48497 * 109.47276 * 240.00208 * 24 22 20 28 28 C 1.47018 * 108.70517 * 24.12623 * 19 18 17 29 29 C 1.52997 * 109.47027 * 120.00129 * 2 1 3 30 30 C 1.53004 * 117.49492 * 248.74507 * 29 2 1 31 31 C 1.53004 * 117.49786 * 180.09017 * 29 2 1 32 32 H 1.09000 * 109.47252 * 299.99432 * 1 2 3 33 33 H 1.08998 * 109.47394 * 60.00334 * 1 2 3 34 34 H 1.09009 * 109.46991 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.47162 * 304.99788 * 4 2 1 36 36 H 1.09006 * 109.46733 * 184.99575 * 4 2 1 37 37 H 0.97006 * 120.00333 * 0.02562 * 7 5 4 38 38 H 1.08999 * 109.47190 * 60.00260 * 8 7 5 39 39 H 1.08997 * 109.47001 * 299.99673 * 8 7 5 40 40 H 1.07994 * 126.12904 * 359.97438 * 10 9 8 41 41 H 1.09000 * 110.89538 * 35.62635 * 17 15 14 42 42 H 1.09001 * 111.03900 * 271.83121 * 17 15 14 43 43 H 1.08999 * 110.37121 * 204.23438 * 18 17 15 44 44 H 1.09001 * 110.45739 * 81.96050 * 18 17 15 45 45 H 0.96998 * 120.00119 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.88241 * 118.36067 * 28 19 18 47 47 H 1.09000 * 109.88049 * 239.37196 * 28 19 18 48 48 H 1.09000 * 115.55753 * 34.41658 * 29 2 1 49 49 H 1.09001 * 117.49978 * 0.02562 * 30 29 2 50 50 H 1.09005 * 117.49635 * 145.02285 * 30 29 2 51 51 H 1.09002 * 117.49973 * 214.97816 * 31 29 2 52 52 H 1.09000 * 117.49411 * 359.97438 * 31 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 8 1.0109 1.0869 -2.3633 7 7 1.9853 -0.3915 -3.7001 8 6 1.5972 0.3648 -4.8932 9 6 2.0996 -0.3455 -6.1237 10 6 3.2095 -0.0274 -6.8293 11 7 3.3094 -0.8995 -7.8543 12 1 4.0087 -0.9126 -8.5263 13 7 2.2281 -1.7864 -7.7726 14 6 1.5007 -1.4500 -6.7385 15 6 0.2391 -2.1377 -6.2843 16 1 -0.1808 -1.6383 -5.4112 17 6 -0.8028 -2.1990 -7.4358 18 6 -1.6322 -3.4466 -7.0418 19 7 -0.6498 -4.3900 -6.4775 20 6 -0.7915 -5.7508 -6.4210 21 1 -0.0112 -6.3573 -5.9855 22 6 -1.9380 -6.3508 -6.9236 23 7 -2.8887 -5.6117 -7.4549 24 14 -2.1316 -8.2071 -6.8458 25 1 -0.9317 -8.8035 -6.2056 26 1 -3.3376 -8.5460 -6.0482 27 1 -2.2796 -8.7474 -8.2210 28 6 0.5068 -3.6278 -5.9849 29 6 2.0400 -0.7213 1.2492 30 6 2.7394 0.1232 2.3164 31 6 3.5551 -0.8263 1.4353 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0278 0.0005 35 1 1.6054 -1.7198 -1.2951 36 1 3.1264 -0.7994 -1.2056 37 1 2.4892 -1.2154 -3.7907 38 1 2.0311 1.3637 -4.8474 39 1 0.5108 0.4422 -4.9370 40 1 3.8926 0.7803 -6.6117 41 1 -0.3110 -2.3445 -8.3976 42 1 -1.4251 -1.3042 -7.4484 43 1 -2.1103 -3.8777 -7.9213 44 1 -2.3807 -3.1857 -6.2936 45 1 -3.6896 -6.0309 -7.8064 46 1 0.6182 -3.7759 -4.9108 47 1 1.4112 -3.9526 -6.4995 48 1 1.4319 -1.5595 1.5894 49 1 2.8357 1.1926 2.1287 50 1 2.5916 -0.1598 3.3587 51 1 3.9436 -1.7334 1.8982 52 1 4.1884 -0.3818 0.6675 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130453571.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:04 Heat of formation + Delta-G solvation = 75.231869 kcal Electronic energy + Delta-G solvation = -30530.041472 eV Core-core repulsion = 26532.175653 eV Total energy + Delta-G solvation = -3997.865819 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.34927 -39.89645 -37.98278 -37.26099 -35.05267 -33.25295 -33.08458 -31.35218 -30.77360 -29.10057 -28.18653 -27.45780 -25.48788 -24.63244 -23.49300 -22.58729 -22.02777 -20.64584 -20.32488 -20.05373 -19.71227 -18.68479 -18.05090 -16.95002 -16.79559 -16.11661 -15.69984 -15.43744 -14.98269 -14.81645 -14.55722 -14.42193 -14.19893 -13.86705 -13.56920 -13.39809 -13.09194 -12.81951 -12.68455 -12.43048 -12.12480 -11.96131 -11.82781 -11.79319 -11.52425 -11.45159 -11.34573 -11.03715 -10.96737 -10.80874 -10.75704 -10.50758 -10.42844 -10.18539 -10.07606 -10.01583 -9.80153 -9.73798 -9.45766 -9.12373 -9.03130 -8.60886 -8.58525 -6.76201 -5.59599 -3.00685 1.83546 2.60863 2.67230 2.87560 3.38650 3.43133 3.48253 3.50935 3.61518 4.40274 4.52548 4.60731 4.66124 4.67927 4.70520 4.79257 4.95384 5.05976 5.12874 5.26375 5.32320 5.33398 5.40724 5.44444 5.54156 5.56947 5.57826 5.62924 5.69752 5.73329 5.78747 5.85730 5.92769 5.95295 5.97545 6.01250 6.08296 6.22841 6.33078 6.44581 6.50082 6.54453 6.64170 6.74366 6.77015 6.98762 7.26065 7.53209 7.59296 7.68990 7.78809 7.92234 8.25095 8.42586 9.27945 9.88902 10.54238 11.44466 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008412 B = 0.002847 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3327.828330 B = 9832.993125 C =12051.533528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.042 4.042 3 H 0.076 0.924 4 C -0.138 4.138 5 C 0.513 3.487 6 O -0.543 6.543 7 N -0.725 5.725 8 C 0.203 3.797 9 C -0.263 4.263 10 C 0.074 3.926 11 N -0.481 5.481 12 H 0.438 0.562 13 N -0.277 5.277 14 C 0.121 3.879 15 C -0.029 4.029 16 H 0.088 0.912 17 C -0.132 4.132 18 C 0.152 3.848 19 N -0.602 5.602 20 C -0.218 4.218 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.922 5.922 24 Si 0.913 3.087 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.151 3.849 29 C -0.148 4.148 30 C -0.180 4.180 31 C -0.183 4.183 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.402 0.598 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.174 0.826 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.107 0.893 44 H 0.013 0.987 45 H 0.251 0.749 46 H 0.019 0.981 47 H 0.028 0.972 48 H 0.105 0.895 49 H 0.093 0.907 50 H 0.091 0.909 51 H 0.093 0.907 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.177 14.906 10.931 23.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.061 4.061 3 H 0.095 0.905 4 C -0.177 4.177 5 C 0.300 3.700 6 O -0.421 6.421 7 N -0.376 5.376 8 C 0.079 3.921 9 C -0.275 4.275 10 C -0.075 4.075 11 N -0.187 5.187 12 H 0.282 0.718 13 N -0.099 5.099 14 C -0.048 4.048 15 C -0.050 4.050 16 H 0.106 0.894 17 C -0.171 4.171 18 C 0.027 3.973 19 N -0.328 5.328 20 C -0.346 4.346 21 H 0.095 0.905 22 C -0.208 4.208 23 N -0.571 5.571 24 Si 0.744 3.256 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.025 3.975 29 C -0.166 4.166 30 C -0.217 4.217 31 C -0.220 4.220 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.236 0.764 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.191 0.809 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.125 0.875 44 H 0.031 0.969 45 H 0.062 0.938 46 H 0.037 0.963 47 H 0.046 0.954 48 H 0.123 0.877 49 H 0.112 0.888 50 H 0.110 0.890 51 H 0.111 0.889 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.717 14.680 9.965 23.052 hybrid contribution 0.615 -0.775 0.299 1.034 sum 15.332 13.905 10.264 23.104 Atomic orbital electron populations 1.21933 0.94118 1.01799 1.03033 1.20436 0.96678 0.98553 0.90414 0.90533 1.21757 1.02780 1.00708 0.92504 1.20691 0.79049 0.85670 0.84630 1.90659 1.39839 1.24848 1.86707 1.46239 1.57854 1.27960 1.05589 1.19349 0.99931 0.93110 0.79733 1.19964 1.00203 1.03910 1.03409 1.22351 0.98660 0.96172 0.90340 1.46377 1.23381 1.24478 1.24438 0.71819 1.77541 0.97916 1.13282 1.21143 1.22257 0.96279 0.94005 0.92212 1.20782 0.89271 0.95848 0.99070 0.89424 1.23132 0.96944 1.00147 0.96919 1.21940 0.89973 0.85675 0.99676 1.44471 1.16334 1.02346 1.69686 1.19106 1.01979 0.80715 1.32823 0.90535 1.24776 0.96630 0.98064 1.01326 1.69806 1.08754 1.32696 1.45856 0.86011 0.77450 0.84914 0.77216 1.20580 1.21796 1.21812 1.21228 0.92045 0.88053 0.96215 1.22431 0.94608 1.01912 0.97622 1.23009 1.04787 0.97618 0.96256 1.22965 0.94054 1.01767 1.03237 0.92967 0.90405 0.93050 0.88530 0.89098 0.76411 0.91259 0.90655 0.80902 0.91567 0.92339 0.87522 0.96923 0.93834 0.96296 0.95448 0.87674 0.88845 0.89008 0.88886 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.92 37.16 0.33 -1.28 16 2 C -0.04 -0.40 2.19 -90.62 -0.20 -0.59 16 3 H 0.08 0.80 7.71 -51.93 -0.40 0.40 16 4 C -0.14 -1.24 5.09 -27.88 -0.14 -1.38 16 5 C 0.51 5.92 7.55 -10.99 -0.08 5.84 16 6 O -0.54 -8.00 13.96 5.56 0.08 -7.92 16 7 N -0.72 -7.69 5.55 -61.47 -0.34 -8.03 16 8 C 0.20 2.30 5.67 -5.19 -0.03 2.27 16 9 C -0.26 -3.15 5.47 -105.05 -0.57 -3.72 16 10 C 0.07 0.70 11.90 -17.22 -0.20 0.50 16 11 N -0.48 -5.24 7.36 30.44 0.22 -5.01 16 12 H 0.44 3.26 8.96 -182.61 -1.64 1.62 16 13 N -0.28 -4.43 12.34 33.67 0.42 -4.02 16 14 C 0.12 1.88 5.77 -82.41 -0.48 1.40 16 15 C -0.03 -0.52 3.37 -89.80 -0.30 -0.82 16 16 H 0.09 1.50 7.27 -51.93 -0.38 1.12 16 17 C -0.13 -2.64 6.53 -24.44 -0.16 -2.80 16 18 C 0.15 3.79 5.89 -2.53 -0.01 3.77 16 19 N -0.60 -15.77 3.39 -170.07 -0.58 -16.34 16 20 C -0.22 -6.18 10.27 -15.06 -0.15 -6.33 16 21 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 22 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 23 N -0.92 -27.28 10.09 55.49 0.56 -26.72 16 24 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 C 0.15 3.24 6.82 -3.07 -0.02 3.22 16 29 C -0.15 -1.19 5.15 -90.62 -0.47 -1.66 16 30 C -0.18 -1.32 10.18 -26.69 -0.27 -1.59 16 31 C -0.18 -1.30 9.68 -26.69 -0.26 -1.56 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 1.00 5.95 -51.93 -0.31 0.69 16 34 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.65 7.13 -51.93 -0.37 0.28 16 37 H 0.40 3.83 8.46 -40.82 -0.35 3.48 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.98 7.70 -51.93 -0.40 0.58 16 40 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.07 1.39 7.89 -51.93 -0.41 0.98 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.11 2.99 5.87 -51.93 -0.30 2.68 16 44 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.03 0.61 7.67 -51.93 -0.40 0.22 16 48 H 0.11 0.85 8.11 -51.93 -0.42 0.42 16 49 H 0.09 0.68 8.05 -51.93 -0.42 0.26 16 50 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.09 0.63 7.59 -51.93 -0.39 0.24 16 LS Contribution 415.34 15.07 6.26 6.26 Total: -1.00 -34.13 415.34 -11.49 -45.62 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -9.96 Total: 4.02 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -3.12 Total: -5.19 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.28 Total: -60.12 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.08 Total: -7.92 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.13 -11.49 -45.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130453571.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.847 kcal (2) G-P(sol) polarization free energy of solvation -34.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds