Wall clock time and date at job start Wed Apr 1 2020 05:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47036 * 2 1 4 4 C 1.53003 * 109.46906 * 239.99935 * 2 1 3 5 5 C 1.50701 * 109.46951 * 64.99950 * 4 2 1 6 6 O 1.21275 * 120.00155 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99468 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99687 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.47122 * 180.02562 * 8 7 5 10 10 C 1.35315 * 126.04034 * 259.97845 * 9 8 7 11 11 N 1.34947 * 107.74580 * 180.02562 * 10 9 8 12 12 H 0.96998 * 126.03962 * 180.02562 * 11 10 9 13 13 N 1.40084 * 107.92515 * 359.74900 * 11 10 9 14 14 C 1.30834 * 108.20620 * 0.41869 * 13 11 10 15 15 C 1.50696 * 125.90213 * 179.85185 * 14 13 11 16 16 H 1.09000 * 110.78568 * 181.48186 * 15 14 13 17 17 C 1.55405 * 110.85075 * 304.77871 * 15 14 13 18 18 C 1.54914 * 101.66697 * 153.69831 * 17 15 14 19 19 N 1.47426 * 104.82992 * 323.07703 * 18 17 15 20 20 C 1.36936 * 125.64583 * 204.09666 * 19 18 17 21 21 H 1.07997 * 119.99931 * 180.02562 * 20 19 18 22 22 C 1.38819 * 120.00094 * 0.03301 * 20 19 18 23 23 N 1.31618 * 119.99956 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99883 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47048 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46969 * 120.00174 * 24 22 20 27 27 H 1.48497 * 109.47276 * 240.00208 * 24 22 20 28 28 C 1.47018 * 108.70517 * 24.12623 * 19 18 17 29 29 C 1.52997 * 109.47027 * 120.00129 * 2 1 3 30 30 C 1.53004 * 117.49492 * 248.74507 * 29 2 1 31 31 C 1.53004 * 117.49786 * 180.09017 * 29 2 1 32 32 H 1.09000 * 109.47252 * 299.99432 * 1 2 3 33 33 H 1.08998 * 109.47394 * 60.00334 * 1 2 3 34 34 H 1.09009 * 109.46991 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.47162 * 304.99788 * 4 2 1 36 36 H 1.09006 * 109.46733 * 184.99575 * 4 2 1 37 37 H 0.97006 * 120.00333 * 0.02562 * 7 5 4 38 38 H 1.08999 * 109.47190 * 60.00260 * 8 7 5 39 39 H 1.08997 * 109.47001 * 299.99673 * 8 7 5 40 40 H 1.07994 * 126.12904 * 359.97438 * 10 9 8 41 41 H 1.09000 * 110.89538 * 35.62635 * 17 15 14 42 42 H 1.09001 * 111.03900 * 271.83121 * 17 15 14 43 43 H 1.08999 * 110.37121 * 204.23438 * 18 17 15 44 44 H 1.09001 * 110.45739 * 81.96050 * 18 17 15 45 45 H 0.96998 * 120.00119 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.88241 * 118.36067 * 28 19 18 47 47 H 1.09000 * 109.88049 * 239.37196 * 28 19 18 48 48 H 1.09000 * 115.55753 * 34.41658 * 29 2 1 49 49 H 1.09001 * 117.49978 * 0.02562 * 30 29 2 50 50 H 1.09005 * 117.49635 * 145.02285 * 30 29 2 51 51 H 1.09002 * 117.49973 * 214.97816 * 31 29 2 52 52 H 1.09000 * 117.49411 * 359.97438 * 31 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 8 1.0109 1.0869 -2.3633 7 7 1.9853 -0.3915 -3.7001 8 6 1.5972 0.3648 -4.8932 9 6 2.0996 -0.3455 -6.1237 10 6 3.2095 -0.0274 -6.8293 11 7 3.3094 -0.8995 -7.8543 12 1 4.0087 -0.9126 -8.5263 13 7 2.2281 -1.7864 -7.7726 14 6 1.5007 -1.4500 -6.7385 15 6 0.2391 -2.1377 -6.2843 16 1 -0.1808 -1.6383 -5.4112 17 6 -0.8028 -2.1990 -7.4358 18 6 -1.6322 -3.4466 -7.0418 19 7 -0.6498 -4.3900 -6.4775 20 6 -0.7915 -5.7508 -6.4210 21 1 -0.0112 -6.3573 -5.9855 22 6 -1.9380 -6.3508 -6.9236 23 7 -2.8887 -5.6117 -7.4549 24 14 -2.1316 -8.2071 -6.8458 25 1 -0.9317 -8.8035 -6.2056 26 1 -3.3376 -8.5460 -6.0482 27 1 -2.2796 -8.7474 -8.2210 28 6 0.5068 -3.6278 -5.9849 29 6 2.0400 -0.7213 1.2492 30 6 2.7394 0.1232 2.3164 31 6 3.5551 -0.8263 1.4353 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0278 0.0005 35 1 1.6054 -1.7198 -1.2951 36 1 3.1264 -0.7994 -1.2056 37 1 2.4892 -1.2154 -3.7907 38 1 2.0311 1.3637 -4.8474 39 1 0.5108 0.4422 -4.9370 40 1 3.8926 0.7803 -6.6117 41 1 -0.3110 -2.3445 -8.3976 42 1 -1.4251 -1.3042 -7.4484 43 1 -2.1103 -3.8777 -7.9213 44 1 -2.3807 -3.1857 -6.2936 45 1 -3.6896 -6.0309 -7.8064 46 1 0.6182 -3.7759 -4.9108 47 1 1.4112 -3.9526 -6.4995 48 1 1.4319 -1.5595 1.5894 49 1 2.8357 1.1926 2.1287 50 1 2.5916 -0.1598 3.3587 51 1 3.9436 -1.7334 1.8982 52 1 4.1884 -0.3818 0.6675 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130453571.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:03 Heat of formation + Delta-G solvation = 53.516768 kcal Electronic energy + Delta-G solvation = -30530.983110 eV Core-core repulsion = 26532.175653 eV Total energy + Delta-G solvation = -3998.807457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.34286 -40.76937 -39.01553 -38.65712 -35.97741 -34.88742 -34.00138 -32.78566 -31.79019 -30.90719 -29.18941 -28.95752 -26.63087 -26.33736 -24.21918 -23.40964 -23.13190 -22.06410 -21.46988 -21.27644 -20.47795 -20.02707 -18.93580 -18.83808 -17.79035 -16.91175 -16.88461 -16.56895 -16.29429 -16.12025 -15.73380 -15.56188 -15.38553 -15.02676 -14.55841 -14.38141 -14.26137 -14.01824 -13.82056 -13.69822 -13.55281 -13.39996 -13.22180 -12.93645 -12.85132 -12.73217 -12.37385 -12.31486 -12.20114 -12.07144 -11.97225 -11.89671 -11.72920 -11.70919 -11.63196 -11.18194 -11.06851 -10.83282 -10.74459 -10.66837 -10.28972 -9.92978 -9.52181 -8.86883 -7.75916 -5.20260 0.97424 1.46559 1.48238 1.54446 1.58555 1.78976 2.03396 2.50769 2.58017 2.99072 3.33545 3.55744 3.73234 3.77600 3.83912 3.90351 4.03481 4.05380 4.13584 4.16752 4.20869 4.26028 4.35889 4.40384 4.55733 4.59645 4.67052 4.68419 4.70427 4.79734 4.82252 4.87088 4.90488 4.96073 5.03894 5.06115 5.07592 5.16190 5.21196 5.25580 5.33515 5.34465 5.43837 5.47712 5.51166 5.57778 5.64518 5.65406 5.81360 6.31635 6.51647 6.69447 6.78329 7.11785 7.39135 7.79061 8.43775 9.26575 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008412 B = 0.002847 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3327.828330 B = 9832.993125 C =12051.533528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.037 4.037 3 H 0.065 0.935 4 C -0.132 4.132 5 C 0.510 3.490 6 O -0.578 6.578 7 N -0.718 5.718 8 C 0.208 3.792 9 C -0.271 4.271 10 C 0.106 3.894 11 N -0.466 5.466 12 H 0.454 0.546 13 N -0.325 5.325 14 C 0.104 3.896 15 C -0.010 4.010 16 H 0.095 0.905 17 C -0.118 4.118 18 C 0.156 3.844 19 N -0.624 5.624 20 C -0.235 4.235 21 H 0.080 0.920 22 C -0.069 4.069 23 N -0.950 5.950 24 Si 0.981 3.019 25 H -0.266 1.266 26 H -0.291 1.291 27 H -0.292 1.292 28 C 0.152 3.848 29 C -0.155 4.155 30 C -0.182 4.182 31 C -0.175 4.175 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.409 0.591 38 H 0.085 0.915 39 H 0.053 0.947 40 H 0.225 0.775 41 H 0.055 0.945 42 H 0.081 0.919 43 H 0.072 0.928 44 H -0.009 1.009 45 H 0.247 0.753 46 H 0.027 0.973 47 H 0.020 0.980 48 H 0.105 0.895 49 H 0.092 0.908 50 H 0.099 0.901 51 H 0.102 0.898 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.085 15.642 11.754 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.056 4.056 3 H 0.084 0.916 4 C -0.172 4.172 5 C 0.298 3.702 6 O -0.459 6.459 7 N -0.369 5.369 8 C 0.084 3.916 9 C -0.283 4.283 10 C -0.044 4.044 11 N -0.174 5.174 12 H 0.301 0.699 13 N -0.148 5.148 14 C -0.063 4.063 15 C -0.031 4.031 16 H 0.113 0.887 17 C -0.157 4.157 18 C 0.031 3.969 19 N -0.350 5.350 20 C -0.364 4.364 21 H 0.098 0.902 22 C -0.261 4.261 23 N -0.600 5.600 24 Si 0.809 3.191 25 H -0.190 1.190 26 H -0.218 1.218 27 H -0.219 1.219 28 C 0.026 3.974 29 C -0.173 4.173 30 C -0.219 4.219 31 C -0.212 4.212 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.133 0.867 37 H 0.244 0.756 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.241 0.759 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.009 0.991 45 H 0.057 0.943 46 H 0.044 0.956 47 H 0.038 0.962 48 H 0.123 0.877 49 H 0.110 0.890 50 H 0.117 0.883 51 H 0.120 0.880 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 17.670 15.407 10.781 25.804 hybrid contribution -0.229 -0.949 0.018 0.977 sum 17.441 14.458 10.799 25.097 Atomic orbital electron populations 1.21889 0.95407 1.01454 1.01948 1.20348 0.95553 0.98264 0.91457 0.91628 1.21775 1.04239 1.00215 0.90969 1.21125 0.78342 0.85321 0.85430 1.90650 1.41458 1.26558 1.87208 1.46209 1.57414 1.28040 1.05264 1.19257 0.98773 0.93849 0.79746 1.19949 1.01070 1.03295 1.04018 1.23021 0.97743 0.95599 0.88013 1.46347 1.22416 1.23570 1.25039 0.69914 1.77435 0.99830 1.15580 1.21965 1.21856 0.95732 0.95405 0.93293 1.20494 0.90375 0.93923 0.98315 0.88670 1.22909 0.97068 0.98537 0.97184 1.21698 0.90272 0.87471 0.97491 1.44776 1.17805 1.02316 1.70126 1.19479 1.02175 0.82167 1.32618 0.90195 1.25654 0.96489 1.02621 1.01382 1.70065 1.09011 1.34287 1.46655 0.84965 0.77635 0.79530 0.76936 1.19011 1.21787 1.21893 1.21320 0.90050 0.89896 0.96131 1.22334 0.95526 1.02158 0.97317 1.23079 1.04589 0.97640 0.96574 1.23042 0.93157 1.01950 1.03065 0.92589 0.92901 0.92970 0.88045 0.86712 0.75599 0.89724 0.92828 0.75875 0.92599 0.90070 0.91021 0.99057 0.94349 0.95552 0.96238 0.87679 0.88973 0.88253 0.88009 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.92 71.98 0.64 -2.57 16 2 C -0.04 -0.67 2.19 -10.79 -0.02 -0.69 16 3 H 0.07 1.33 7.71 -2.39 -0.02 1.31 16 4 C -0.13 -2.17 5.09 29.85 0.15 -2.02 16 5 C 0.51 11.21 7.55 87.66 0.66 11.87 16 6 O -0.58 -16.92 13.96 -3.02 -0.04 -16.96 16 7 N -0.72 -13.92 5.55 -466.79 -2.59 -16.51 16 8 C 0.21 4.29 5.67 85.63 0.49 4.77 16 9 C -0.27 -5.78 5.47 -20.14 -0.11 -5.89 16 10 C 0.11 1.55 11.90 83.54 0.99 2.54 16 11 N -0.47 -8.64 7.36 -57.59 -0.42 -9.07 16 12 H 0.45 5.20 8.96 -213.33 -1.91 3.29 16 13 N -0.33 -9.92 12.34 -47.39 -0.58 -10.51 16 14 C 0.10 3.10 5.77 43.10 0.25 3.35 16 15 C -0.01 -0.37 3.37 -10.26 -0.03 -0.40 16 16 H 0.10 3.24 7.27 -2.39 -0.02 3.22 16 17 C -0.12 -4.79 6.53 32.08 0.21 -4.58 16 18 C 0.16 8.09 5.89 86.86 0.51 8.60 16 19 N -0.62 -33.60 3.39 -691.98 -2.35 -35.95 16 20 C -0.24 -13.63 10.27 84.04 0.86 -12.77 16 21 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 22 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 23 N -0.95 -58.23 10.09 21.65 0.22 -58.02 16 24 Si 0.98 46.68 29.55 68.60 2.03 48.71 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 27 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 28 C 0.15 6.57 6.82 86.73 0.59 7.16 16 29 C -0.16 -2.27 5.15 -10.79 -0.06 -2.32 16 30 C -0.18 -2.37 10.18 30.62 0.31 -2.06 16 31 C -0.18 -2.08 9.68 30.62 0.30 -1.78 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.05 1.41 5.95 -2.39 -0.01 1.39 16 34 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.11 1.33 7.13 -2.38 -0.02 1.31 16 37 H 0.41 6.86 8.46 -92.70 -0.78 6.08 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.05 1.35 7.70 -2.39 -0.02 1.34 16 40 H 0.22 0.96 8.06 -2.91 -0.02 0.94 16 41 H 0.06 2.38 7.89 -2.39 -0.02 2.37 16 42 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 43 H 0.07 4.24 5.87 -2.39 -0.01 4.22 16 44 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 45 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 46 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.02 0.88 7.67 -2.39 -0.02 0.86 16 48 H 0.11 1.55 8.11 -2.39 -0.02 1.53 16 49 H 0.09 1.22 8.05 -2.39 -0.02 1.20 16 50 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 51 H 0.10 1.04 8.14 -2.39 -0.02 1.03 16 52 H 0.10 1.06 7.59 -2.39 -0.02 1.05 16 Total: -1.00 -77.53 415.34 0.70 -76.83 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -1.76 Total: 21.83 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 6.21 Total: -0.35 kcal Atomic # 7 Polarization: -124.33 SS G_CDS: -5.73 Total: -130.06 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.04 Total: -16.96 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -77.53 0.70 -76.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130453571.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.347 kcal (2) G-P(sol) polarization free energy of solvation -77.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds