Wall clock time and date at job start Wed Apr 1 2020 04:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50694 * 120.00076 * 2 1 4 4 C 1.50701 * 120.00073 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.47061 * 95.00205 * 4 2 1 6 6 H 1.09000 * 109.47112 * 54.99969 * 5 4 2 7 7 C 1.52999 * 109.47039 * 295.00033 * 5 4 2 8 8 C 1.50698 * 109.47060 * 175.00171 * 5 4 2 9 9 O 1.21288 * 120.00160 * 359.97438 * 8 5 4 10 10 N 1.34781 * 120.00019 * 180.02562 * 8 5 4 11 11 C 1.48146 * 127.83592 * 179.97438 * 10 8 5 12 12 C 1.54389 * 104.71947 * 219.64451 * 11 10 8 13 13 H 1.09003 * 110.34006 * 95.05014 * 12 11 10 14 14 C 1.50694 * 110.34232 * 217.20514 * 12 11 10 15 15 C 1.34669 * 125.99021 * 33.26545 * 14 12 11 16 16 N 1.36887 * 106.81445 * 179.84577 * 15 14 12 17 17 C 1.46505 * 126.39221 * 180.11345 * 16 15 14 18 18 C 1.35037 * 107.20551 * 0.41029 * 16 15 14 19 19 N 1.30500 * 108.70123 * 359.74421 * 18 16 15 20 20 C 1.54289 * 104.96102 * 336.07694 * 12 11 10 21 21 H 1.08995 * 110.34197 * 241.13273 * 20 12 11 22 22 N 1.46498 * 110.34572 * 118.86791 * 20 12 11 23 23 C 1.36932 * 120.00297 * 154.99650 * 22 20 12 24 24 H 1.08005 * 119.99727 * 0.02562 * 23 22 20 25 25 C 1.38811 * 120.00247 * 179.97438 * 23 22 20 26 26 N 1.31615 * 119.99754 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 119.99833 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46750 * 90.00875 * 27 25 23 29 29 H 1.48500 * 109.47033 * 210.00288 * 27 25 23 30 30 H 1.48494 * 109.47491 * 330.00468 * 27 25 23 31 31 C 1.48427 * 127.98028 * 0.08868 * 10 8 5 32 32 H 1.07999 * 120.00017 * 0.02562 * 1 2 3 33 33 H 1.08007 * 119.99930 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47631 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.47067 * 299.99777 * 3 2 1 36 36 H 1.09004 * 109.47021 * 59.99109 * 3 2 1 37 37 H 1.09002 * 109.47005 * 335.00125 * 4 2 1 38 38 H 1.09000 * 109.47145 * 215.00598 * 4 2 1 39 39 H 1.08999 * 109.47363 * 60.00022 * 7 5 4 40 40 H 1.08999 * 109.47132 * 180.02562 * 7 5 4 41 41 H 1.09000 * 109.47116 * 299.99934 * 7 5 4 42 42 H 1.09002 * 110.40776 * 100.80198 * 11 10 8 43 43 H 1.09002 * 110.40863 * 338.48606 * 11 10 8 44 44 H 1.08000 * 126.59057 * 359.95457 * 15 14 12 45 45 H 1.08995 * 109.47459 * 270.32052 * 17 16 15 46 46 H 1.08995 * 109.47243 * 30.33074 * 17 16 15 47 47 H 1.09003 * 109.46495 * 150.32618 * 17 16 15 48 48 H 1.08004 * 125.65076 * 179.71767 * 18 16 15 49 49 H 0.97007 * 119.99847 * 335.00673 * 22 20 12 50 50 H 0.97002 * 119.99856 * 179.97438 * 26 25 23 51 51 H 1.09004 * 110.39413 * 21.57624 * 31 10 8 52 52 H 1.09006 * 110.49084 * 259.21655 * 31 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4275 -1.6845 -1.4362 6 1 2.9771 -0.8655 -1.9002 7 6 1.1488 -1.9557 -2.2315 8 6 3.2853 -2.9234 -1.4267 9 8 3.5774 -3.4508 -0.3742 10 7 3.7290 -3.4449 -2.5877 11 6 4.5753 -4.6455 -2.7800 12 6 5.5499 -4.2610 -3.9139 13 1 6.4879 -3.8925 -3.4985 14 6 5.8043 -5.4454 -4.8102 15 6 4.9191 -6.4146 -5.1112 16 7 5.5567 -7.2856 -5.9530 17 6 4.9850 -8.4974 -6.5456 18 6 6.8130 -6.8229 -6.1298 19 7 6.9539 -5.7220 -5.4433 20 6 4.8304 -3.1418 -4.6951 21 1 4.6609 -3.4489 -5.7271 22 7 5.6151 -1.9055 -4.6526 23 6 5.4735 -0.9703 -5.6428 24 1 4.7830 -1.1440 -6.4550 25 6 6.2166 0.2014 -5.6023 26 7 7.0577 0.4133 -4.6124 27 14 6.0229 1.4775 -6.9528 28 1 4.9529 2.4364 -6.5778 29 1 7.3031 2.2088 -7.1301 30 1 5.6588 0.8016 -8.2239 31 6 3.4844 -2.9480 -3.9647 32 1 -0.5400 0.9353 -0.0004 33 1 -0.5400 -0.9354 -0.0004 34 1 3.1351 1.1060 0.0005 35 1 1.8002 1.8766 -0.8900 36 1 1.8000 1.8767 0.8899 37 1 1.4386 -2.0853 0.4352 38 1 2.9742 -1.1986 0.5901 39 1 0.5283 -1.0596 -2.2384 40 1 1.4081 -2.2264 -3.2550 41 1 0.5992 -2.7747 -1.7676 42 1 3.9640 -5.4978 -3.0769 43 1 5.1253 -4.8731 -1.8668 44 1 3.9013 -6.4892 -4.7579 45 1 5.1590 -9.3437 -5.8812 46 1 3.9130 -8.3613 -6.6879 47 1 5.4580 -8.6885 -7.5089 48 1 7.5750 -7.2873 -6.7382 49 1 6.2351 -1.7493 -3.9231 50 1 7.5773 1.2320 -4.5842 51 1 3.2113 -1.8929 -3.9449 52 1 2.7021 -3.5332 -4.4482 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130656216.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:41 Heat of formation + Delta-G solvation = 61.156366 kcal Electronic energy + Delta-G solvation = -31385.918565 eV Core-core repulsion = 27387.442387 eV Total energy + Delta-G solvation = -3998.476179 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.97601 -39.85625 -37.73174 -36.42659 -34.10039 -33.86186 -32.83589 -31.41798 -30.55537 -28.32051 -27.43523 -27.22940 -26.97618 -26.55807 -24.66106 -23.37890 -22.07033 -21.02312 -20.67062 -19.30208 -18.75053 -18.28407 -17.36897 -16.74966 -16.60155 -15.65250 -15.51776 -15.33143 -14.88818 -14.61502 -14.38717 -14.17037 -14.05741 -13.62615 -13.58776 -13.28993 -13.21605 -13.11971 -12.94672 -12.82614 -12.74728 -12.29983 -12.06807 -11.94553 -11.73579 -11.59230 -11.41796 -11.17972 -10.96433 -10.84651 -10.78947 -10.69683 -10.66897 -10.53771 -10.08117 -9.75782 -9.62242 -9.41695 -9.36704 -9.02101 -8.91840 -8.32916 -8.17011 -6.93616 -5.75536 -3.05132 2.14496 2.25250 2.82638 3.01981 3.31207 3.37887 3.43429 3.48989 3.50865 4.52661 4.56636 4.69055 4.70336 4.88936 4.90268 4.95701 5.05859 5.08095 5.12964 5.18958 5.26540 5.32157 5.38864 5.59202 5.60754 5.63575 5.65514 5.73202 5.74332 5.83332 5.84939 5.87690 5.94256 5.96297 6.03680 6.06796 6.10721 6.25012 6.28756 6.29941 6.34319 6.43462 6.51875 6.59720 6.69175 6.89959 6.95328 6.97831 7.28136 7.69848 7.97436 8.30890 8.41529 8.54143 9.53278 10.09235 10.44160 11.46428 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007041 B = 0.004157 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3975.838383 B = 6734.420767 C = 9836.273419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.124 4.124 4 C -0.066 4.066 5 C -0.100 4.100 6 H 0.105 0.895 7 C -0.148 4.148 8 C 0.543 3.457 9 O -0.557 6.557 10 N -0.611 5.611 11 C 0.116 3.884 12 C -0.030 4.030 13 H 0.097 0.903 14 C 0.036 3.964 15 C -0.064 4.064 16 N -0.468 5.468 17 C 0.076 3.924 18 C 0.176 3.824 19 N -0.477 5.477 20 C 0.182 3.818 21 H 0.067 0.933 22 N -0.710 5.710 23 C -0.243 4.243 24 H 0.070 0.930 25 C -0.008 4.008 26 N -0.927 5.927 27 Si 0.904 3.096 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 C 0.071 3.929 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.171 0.829 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.202 0.798 49 H 0.386 0.614 50 H 0.255 0.745 51 H 0.091 0.909 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.557 -13.537 1.085 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.112 4.112 3 C -0.181 4.181 4 C -0.104 4.104 5 C -0.121 4.121 6 H 0.123 0.877 7 C -0.205 4.205 8 C 0.333 3.667 9 O -0.436 6.436 10 N -0.344 5.344 11 C -0.007 4.007 12 C -0.052 4.052 13 H 0.115 0.885 14 C -0.094 4.094 15 C -0.196 4.196 16 N -0.152 5.152 17 C -0.067 4.067 18 C -0.106 4.106 19 N -0.194 5.194 20 C 0.068 3.932 21 H 0.085 0.915 22 N -0.350 5.350 23 C -0.374 4.374 24 H 0.088 0.912 25 C -0.204 4.204 26 N -0.575 5.575 27 Si 0.735 3.265 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 C -0.055 4.055 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.189 0.811 45 H 0.092 0.908 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.218 0.782 49 H 0.220 0.780 50 H 0.065 0.935 51 H 0.109 0.891 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.794 -13.303 1.549 17.201 hybrid contribution -0.550 0.226 -0.820 1.013 sum -11.344 -13.077 0.728 17.327 Atomic orbital electron populations 1.23602 0.95229 1.01489 1.03901 1.21792 0.95365 0.95780 0.98270 1.20896 1.00712 0.94600 1.01857 1.20517 1.00629 0.94049 0.95159 1.21129 0.96844 0.96401 0.97738 0.87728 1.21931 0.96098 1.02238 1.00254 1.20183 0.79695 0.84975 0.81855 1.90652 1.59646 1.62920 1.30386 1.48910 1.50609 1.28393 1.06441 1.22275 0.92236 0.87605 0.98624 1.20712 0.99833 0.91741 0.92865 0.88457 1.20338 0.90143 0.97076 1.01862 1.22361 1.00357 0.94784 1.02050 1.45368 1.12219 1.20798 1.36839 1.21974 1.00289 0.85337 0.99121 1.24987 0.86768 0.94680 1.04137 1.70233 1.25625 1.12876 1.10696 1.21095 0.89023 0.86699 0.96333 0.91536 1.42442 1.47673 1.16150 1.28744 1.19195 1.19532 0.96724 1.01939 0.91190 1.24722 0.99071 0.98417 0.98205 1.69668 1.28805 1.26818 1.32174 0.86245 0.76921 0.81798 0.81528 1.21739 1.21806 1.20802 1.23719 1.00139 1.00537 0.81065 0.88759 0.88638 0.91524 0.91373 0.91777 0.91022 0.90393 0.91281 0.91420 0.92786 0.91607 0.90265 0.81145 0.90848 0.89872 0.89647 0.78171 0.77952 0.93460 0.89092 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.23 12.54 29.01 0.36 -1.86 16 2 C -0.11 -1.37 4.79 -101.07 -0.48 -1.86 16 3 C -0.12 -1.47 10.05 36.00 0.36 -1.11 16 4 C -0.07 -0.92 4.13 -27.88 -0.12 -1.03 16 5 C -0.10 -1.49 2.05 -91.77 -0.19 -1.68 16 6 H 0.10 1.71 7.96 -51.93 -0.41 1.30 16 7 C -0.15 -1.84 8.58 37.16 0.32 -1.52 16 8 C 0.54 9.50 7.27 -10.98 -0.08 9.42 16 9 O -0.56 -11.22 16.19 5.55 0.09 -11.13 16 10 N -0.61 -10.11 3.32 -169.08 -0.56 -10.67 16 11 C 0.12 1.81 6.53 -2.41 -0.02 1.80 16 12 C -0.03 -0.53 3.34 -90.37 -0.30 -0.83 16 13 H 0.10 1.99 7.68 -51.93 -0.40 1.59 16 14 C 0.04 0.58 5.88 -82.86 -0.49 0.09 16 15 C -0.06 -0.81 10.55 -16.56 -0.17 -0.99 16 16 N -0.47 -5.09 3.15 -125.99 -0.40 -5.49 16 17 C 0.08 0.43 11.18 59.85 0.67 1.10 16 18 C 0.18 2.28 12.56 -90.38 -1.14 1.14 16 19 N -0.48 -8.37 11.25 -10.88 -0.12 -8.49 16 20 C 0.18 3.48 3.36 -66.54 -0.22 3.25 16 21 H 0.07 1.33 7.65 -51.93 -0.40 0.93 16 22 N -0.71 -17.30 5.11 -52.08 -0.27 -17.56 16 23 C -0.24 -6.50 9.96 -15.06 -0.15 -6.65 16 24 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 25 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 26 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 27 Si 0.90 22.06 29.55 -169.99 -5.02 17.03 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 30 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 31 C 0.07 1.16 4.98 -2.26 -0.01 1.15 16 32 H 0.09 0.92 8.05 -52.49 -0.42 0.49 16 33 H 0.10 0.97 7.99 -52.48 -0.42 0.55 16 34 H 0.07 0.85 8.00 -51.93 -0.42 0.43 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.98 7.99 -51.93 -0.41 0.57 16 38 H 0.08 1.18 7.95 -51.93 -0.41 0.77 16 39 H 0.07 0.80 6.52 -51.93 -0.34 0.46 16 40 H 0.07 0.84 5.36 -51.93 -0.28 0.56 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.86 6.13 -51.93 -0.32 0.55 16 43 H 0.08 1.32 7.88 -51.93 -0.41 0.91 16 44 H 0.17 1.74 7.05 -52.49 -0.37 1.37 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.20 1.79 8.06 -52.48 -0.42 1.37 16 49 H 0.39 10.36 7.56 -40.82 -0.31 10.05 16 50 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 51 H 0.09 1.62 6.51 -51.93 -0.34 1.28 16 52 H 0.06 0.80 8.02 -51.93 -0.42 0.38 16 LS Contribution 417.53 15.07 6.29 6.29 Total: -1.00 -34.42 417.53 -9.59 -44.00 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -8.58 Total: 12.90 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.75 Total: 0.12 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: -0.62 Total: -69.22 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.42 -9.59 -44.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130656216.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.161 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds