Wall clock time and date at job start Wed Apr 1 2020 04:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50694 * 120.00076 * 2 1 4 4 C 1.50701 * 120.00073 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.47061 * 95.00205 * 4 2 1 6 6 H 1.09000 * 109.47112 * 54.99969 * 5 4 2 7 7 C 1.52999 * 109.47039 * 295.00033 * 5 4 2 8 8 C 1.50698 * 109.47060 * 175.00171 * 5 4 2 9 9 O 1.21288 * 120.00160 * 359.97438 * 8 5 4 10 10 N 1.34781 * 120.00019 * 180.02562 * 8 5 4 11 11 C 1.48146 * 127.83592 * 179.97438 * 10 8 5 12 12 C 1.54389 * 104.71947 * 219.64451 * 11 10 8 13 13 H 1.09003 * 110.34006 * 95.05014 * 12 11 10 14 14 C 1.50694 * 110.34232 * 217.20514 * 12 11 10 15 15 C 1.34669 * 125.99021 * 33.26545 * 14 12 11 16 16 N 1.36887 * 106.81445 * 179.84577 * 15 14 12 17 17 C 1.46505 * 126.39221 * 180.11345 * 16 15 14 18 18 C 1.35037 * 107.20551 * 0.41029 * 16 15 14 19 19 N 1.30500 * 108.70123 * 359.74421 * 18 16 15 20 20 C 1.54289 * 104.96102 * 336.07694 * 12 11 10 21 21 H 1.08995 * 110.34197 * 241.13273 * 20 12 11 22 22 N 1.46498 * 110.34572 * 118.86791 * 20 12 11 23 23 C 1.36932 * 120.00297 * 154.99650 * 22 20 12 24 24 H 1.08005 * 119.99727 * 0.02562 * 23 22 20 25 25 C 1.38811 * 120.00247 * 179.97438 * 23 22 20 26 26 N 1.31615 * 119.99754 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 119.99833 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46750 * 90.00875 * 27 25 23 29 29 H 1.48500 * 109.47033 * 210.00288 * 27 25 23 30 30 H 1.48494 * 109.47491 * 330.00468 * 27 25 23 31 31 C 1.48427 * 127.98028 * 0.08868 * 10 8 5 32 32 H 1.07999 * 120.00017 * 0.02562 * 1 2 3 33 33 H 1.08007 * 119.99930 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47631 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.47067 * 299.99777 * 3 2 1 36 36 H 1.09004 * 109.47021 * 59.99109 * 3 2 1 37 37 H 1.09002 * 109.47005 * 335.00125 * 4 2 1 38 38 H 1.09000 * 109.47145 * 215.00598 * 4 2 1 39 39 H 1.08999 * 109.47363 * 60.00022 * 7 5 4 40 40 H 1.08999 * 109.47132 * 180.02562 * 7 5 4 41 41 H 1.09000 * 109.47116 * 299.99934 * 7 5 4 42 42 H 1.09002 * 110.40776 * 100.80198 * 11 10 8 43 43 H 1.09002 * 110.40863 * 338.48606 * 11 10 8 44 44 H 1.08000 * 126.59057 * 359.95457 * 15 14 12 45 45 H 1.08995 * 109.47459 * 270.32052 * 17 16 15 46 46 H 1.08995 * 109.47243 * 30.33074 * 17 16 15 47 47 H 1.09003 * 109.46495 * 150.32618 * 17 16 15 48 48 H 1.08004 * 125.65076 * 179.71767 * 18 16 15 49 49 H 0.97007 * 119.99847 * 335.00673 * 22 20 12 50 50 H 0.97002 * 119.99856 * 179.97438 * 26 25 23 51 51 H 1.09004 * 110.39413 * 21.57624 * 31 10 8 52 52 H 1.09006 * 110.49084 * 259.21655 * 31 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4275 -1.6845 -1.4362 6 1 2.9771 -0.8655 -1.9002 7 6 1.1488 -1.9557 -2.2315 8 6 3.2853 -2.9234 -1.4267 9 8 3.5774 -3.4508 -0.3742 10 7 3.7290 -3.4449 -2.5877 11 6 4.5753 -4.6455 -2.7800 12 6 5.5499 -4.2610 -3.9139 13 1 6.4879 -3.8925 -3.4985 14 6 5.8043 -5.4454 -4.8102 15 6 4.9191 -6.4146 -5.1112 16 7 5.5567 -7.2856 -5.9530 17 6 4.9850 -8.4974 -6.5456 18 6 6.8130 -6.8229 -6.1298 19 7 6.9539 -5.7220 -5.4433 20 6 4.8304 -3.1418 -4.6951 21 1 4.6609 -3.4489 -5.7271 22 7 5.6151 -1.9055 -4.6526 23 6 5.4735 -0.9703 -5.6428 24 1 4.7830 -1.1440 -6.4550 25 6 6.2166 0.2014 -5.6023 26 7 7.0577 0.4133 -4.6124 27 14 6.0229 1.4775 -6.9528 28 1 4.9529 2.4364 -6.5778 29 1 7.3031 2.2088 -7.1301 30 1 5.6588 0.8016 -8.2239 31 6 3.4844 -2.9480 -3.9647 32 1 -0.5400 0.9353 -0.0004 33 1 -0.5400 -0.9354 -0.0004 34 1 3.1351 1.1060 0.0005 35 1 1.8002 1.8766 -0.8900 36 1 1.8000 1.8767 0.8899 37 1 1.4386 -2.0853 0.4352 38 1 2.9742 -1.1986 0.5901 39 1 0.5283 -1.0596 -2.2384 40 1 1.4081 -2.2264 -3.2550 41 1 0.5992 -2.7747 -1.7676 42 1 3.9640 -5.4978 -3.0769 43 1 5.1253 -4.8731 -1.8668 44 1 3.9013 -6.4892 -4.7579 45 1 5.1590 -9.3437 -5.8812 46 1 3.9130 -8.3613 -6.6879 47 1 5.4580 -8.6885 -7.5089 48 1 7.5750 -7.2873 -6.7382 49 1 6.2351 -1.7493 -3.9231 50 1 7.5773 1.2320 -4.5842 51 1 3.2113 -1.8929 -3.9449 52 1 2.7021 -3.5332 -4.4482 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130656216.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:39 Heat of formation + Delta-G solvation = 40.562804 kcal Electronic energy + Delta-G solvation = -31386.811569 eV Core-core repulsion = 27387.442387 eV Total energy + Delta-G solvation = -3999.369183 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.98800 -41.21416 -39.10500 -37.58865 -35.73440 -35.04496 -33.98465 -32.98711 -32.08305 -29.45702 -28.92678 -28.15171 -27.94725 -27.48012 -26.20261 -25.05391 -23.22954 -22.10878 -21.99060 -20.64191 -20.03226 -19.31997 -19.05494 -17.96319 -17.91711 -16.98026 -16.78501 -16.40628 -16.30246 -15.87718 -15.63155 -15.33480 -15.26188 -15.02451 -14.83417 -14.65689 -14.51985 -14.22913 -13.89326 -13.74393 -13.54089 -13.37283 -13.31679 -13.24818 -13.16686 -12.87232 -12.78464 -12.56107 -12.45480 -12.41577 -12.15009 -12.09066 -11.94368 -11.89761 -11.76687 -11.67444 -11.03916 -10.76590 -10.73020 -10.38783 -9.84733 -9.78010 -9.29883 -8.86566 -7.89531 -5.18732 1.18676 1.32601 1.48583 1.50538 1.58505 1.62481 2.02731 2.07468 2.22265 2.58803 3.40705 3.45027 3.53186 3.81561 3.90556 3.92447 3.98050 4.03026 4.09378 4.13321 4.17834 4.26105 4.34045 4.38696 4.46203 4.52223 4.54171 4.63173 4.65786 4.73571 4.79256 4.80298 4.82187 4.83707 4.90691 4.94049 4.96063 5.08260 5.11454 5.14013 5.17696 5.23721 5.32117 5.37481 5.43060 5.56892 5.77349 5.85850 6.01778 6.29873 6.41671 6.59553 7.14905 7.29126 7.36156 8.09704 8.34053 9.34052 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007041 B = 0.004157 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3975.838383 B = 6734.420767 C = 9836.273419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.134 4.134 3 C -0.123 4.123 4 C -0.059 4.059 5 C -0.095 4.095 6 H 0.084 0.916 7 C -0.139 4.139 8 C 0.536 3.464 9 O -0.589 6.589 10 N -0.611 5.611 11 C 0.123 3.877 12 C -0.017 4.017 13 H 0.051 0.949 14 C -0.007 4.007 15 C -0.042 4.042 16 N -0.460 5.460 17 C 0.068 3.932 18 C 0.178 3.822 19 N -0.543 5.543 20 C 0.178 3.822 21 H 0.064 0.936 22 N -0.725 5.725 23 C -0.233 4.233 24 H 0.081 0.919 25 C -0.074 4.074 26 N -0.971 5.971 27 Si 0.969 3.031 28 H -0.284 1.284 29 H -0.303 1.303 30 H -0.269 1.269 31 C 0.086 3.914 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.103 0.897 43 H 0.062 0.938 44 H 0.203 0.797 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.105 0.895 48 H 0.234 0.766 49 H 0.368 0.632 50 H 0.248 0.752 51 H 0.077 0.923 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.086 -15.625 -0.684 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.134 4.134 3 C -0.179 4.179 4 C -0.097 4.097 5 C -0.116 4.116 6 H 0.102 0.898 7 C -0.196 4.196 8 C 0.327 3.673 9 O -0.470 6.470 10 N -0.343 5.343 11 C 0.000 4.000 12 C -0.039 4.039 13 H 0.069 0.931 14 C -0.136 4.136 15 C -0.176 4.176 16 N -0.142 5.142 17 C -0.073 4.073 18 C -0.105 4.105 19 N -0.262 5.262 20 C 0.067 3.933 21 H 0.082 0.918 22 N -0.363 5.363 23 C -0.364 4.364 24 H 0.099 0.901 25 C -0.266 4.266 26 N -0.622 5.622 27 Si 0.798 3.202 28 H -0.211 1.211 29 H -0.230 1.230 30 H -0.193 1.193 31 C -0.039 4.039 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.121 0.879 43 H 0.081 0.919 44 H 0.219 0.781 45 H 0.108 0.892 46 H 0.119 0.881 47 H 0.124 0.876 48 H 0.250 0.750 49 H 0.199 0.801 50 H 0.057 0.943 51 H 0.095 0.905 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.383 -15.464 -0.271 21.121 hybrid contribution 0.562 0.696 -0.295 0.941 sum -13.822 -14.768 -0.565 20.235 Atomic orbital electron populations 1.23805 0.94461 1.02806 1.00874 1.21683 0.95948 0.94824 1.00956 1.20877 0.99455 0.94910 1.02683 1.20418 0.99867 0.95291 0.94124 1.21123 0.97488 0.94216 0.98810 0.89825 1.21890 0.94693 1.03251 0.99808 1.20708 0.79734 0.85395 0.81493 1.90629 1.60985 1.64004 1.31426 1.48979 1.50324 1.28557 1.06437 1.22308 0.92136 0.88317 0.97214 1.20400 0.97894 0.92160 0.93441 0.93064 1.20195 0.91456 0.98212 1.03757 1.22660 1.00740 0.93405 1.00746 1.45652 1.11396 1.21509 1.35626 1.22377 1.01296 0.83424 1.00179 1.25526 0.88193 0.93571 1.03223 1.70110 1.27355 1.15770 1.12958 1.21300 0.89960 0.85160 0.96860 0.91805 1.42630 1.48280 1.17664 1.27771 1.19608 1.18194 0.96682 1.01956 0.90077 1.25515 0.99643 1.00822 1.00593 1.69851 1.30603 1.27175 1.34527 0.85209 0.76259 0.79331 0.79388 1.21093 1.22979 1.19343 1.23506 0.99099 1.00630 0.80638 0.87115 0.87531 0.93582 0.91201 0.90283 0.90681 0.92855 0.90113 0.91212 0.91545 0.87868 0.91893 0.78055 0.89182 0.88146 0.87621 0.75013 0.80099 0.94316 0.90493 0.88017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.49 12.54 67.78 0.85 -2.64 16 2 C -0.13 -3.18 4.79 -16.49 -0.08 -3.26 16 3 C -0.12 -2.91 10.05 71.23 0.72 -2.20 16 4 C -0.06 -1.67 4.13 29.85 0.12 -1.54 16 5 C -0.10 -2.85 2.05 -11.54 -0.02 -2.87 16 6 H 0.08 2.86 7.96 -2.39 -0.02 2.84 16 7 C -0.14 -3.18 8.58 71.98 0.62 -2.56 16 8 C 0.54 18.99 7.27 87.66 0.64 19.62 16 9 O -0.59 -24.37 16.19 -3.06 -0.05 -24.42 16 10 N -0.61 -20.09 3.32 -807.24 -2.68 -22.77 16 11 C 0.12 3.83 6.53 86.53 0.56 4.39 16 12 C -0.02 -0.63 3.34 -10.63 -0.04 -0.67 16 13 H 0.05 2.30 7.68 -2.39 -0.02 2.28 16 14 C -0.01 -0.24 5.88 41.39 0.24 0.00 16 15 C -0.04 -0.95 10.55 83.09 0.88 -0.07 16 16 N -0.46 -8.54 3.15 -552.53 -1.74 -10.28 16 17 C 0.07 0.47 11.18 127.77 1.43 1.90 16 18 C 0.18 4.30 12.56 180.26 2.26 6.56 16 19 N -0.54 -19.32 11.25 -188.32 -2.12 -21.44 16 20 C 0.18 6.89 3.36 45.89 0.15 7.04 16 21 H 0.06 2.52 7.65 -2.39 -0.02 2.50 16 22 N -0.73 -36.80 5.11 -318.69 -1.63 -38.43 16 23 C -0.23 -12.69 9.96 84.03 0.84 -11.86 16 24 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 25 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 26 N -0.97 -60.81 13.06 21.65 0.28 -60.53 16 27 Si 0.97 46.20 29.55 68.60 2.03 48.22 16 28 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 29 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 30 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 31 C 0.09 2.71 4.98 86.47 0.43 3.15 16 32 H 0.11 1.79 8.05 -2.91 -0.02 1.76 16 33 H 0.11 1.82 7.99 -2.91 -0.02 1.79 16 34 H 0.04 1.25 8.00 -2.39 -0.02 1.23 16 35 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.07 2.02 7.99 -2.39 -0.02 2.00 16 38 H 0.05 1.72 7.95 -2.39 -0.02 1.71 16 39 H 0.08 1.66 6.52 -2.39 -0.02 1.64 16 40 H 0.07 1.55 5.36 -2.39 -0.01 1.54 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.10 2.43 6.13 -2.39 -0.01 2.42 16 43 H 0.06 2.17 7.88 -2.39 -0.02 2.15 16 44 H 0.20 3.15 7.05 -2.91 -0.02 3.13 16 45 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 48 H 0.23 3.63 8.06 -2.91 -0.02 3.61 16 49 H 0.37 21.11 7.56 -92.70 -0.70 20.41 16 50 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 51 H 0.08 2.70 6.51 -2.38 -0.02 2.68 16 52 H 0.10 2.39 8.02 -2.38 -0.02 2.38 16 Total: -1.00 -80.44 417.53 4.38 -76.06 By element: Atomic # 1 Polarization: 42.12 SS G_CDS: 0.21 Total: 42.33 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 10.07 Total: 11.23 kcal Atomic # 7 Polarization: -145.56 SS G_CDS: -7.88 Total: -153.44 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.05 Total: -24.42 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -80.44 4.38 -76.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130656216.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.627 kcal (2) G-P(sol) polarization free energy of solvation -80.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds