Wall clock time and date at job start Wed Apr 1 2020 04:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09001 * 109.46489 * 2 1 4 4 C 1.52994 * 109.47128 * 240.00106 * 2 1 3 5 5 C 1.53005 * 109.47342 * 67.25785 * 4 2 1 6 6 H 1.09001 * 109.47286 * 307.27762 * 5 4 2 7 7 C 1.52996 * 109.47437 * 187.27630 * 5 4 2 8 8 N 1.46506 * 109.46806 * 67.27711 * 5 4 2 9 9 C 1.34779 * 119.99520 * 204.89072 * 8 5 4 10 10 O 1.21595 * 120.00445 * 5.19561 * 9 8 5 11 11 C 1.47429 * 119.99346 * 185.18502 * 9 8 5 12 12 C 1.39975 * 120.61170 * 28.92437 * 11 9 8 13 13 C 1.38328 * 118.36689 * 180.19221 * 12 11 9 14 14 C 1.38376 * 119.51122 * 359.53266 * 13 12 11 15 15 N 1.31847 * 121.21502 * 0.22877 * 14 13 12 16 16 C 1.32422 * 121.77688 * 0.02562 * 15 14 13 17 17 N 1.38267 * 119.82835 * 180.02562 * 16 15 14 18 18 C 1.48541 * 110.99750 * 268.59356 * 17 16 15 19 19 C 1.54934 * 103.22565 * 159.71841 * 18 17 16 20 20 C 1.54598 * 102.92597 * 322.58526 * 19 18 17 21 21 C 1.47900 * 111.00160 * 25.98555 * 17 16 15 22 22 N 1.46493 * 109.46882 * 120.00135 * 2 1 3 23 23 C 1.36945 * 119.99798 * 275.81980 * 22 2 1 24 24 H 1.08000 * 120.00171 * 4.89126 * 23 22 2 25 25 C 1.38816 * 119.99678 * 184.89239 * 23 22 2 26 26 N 1.31614 * 119.99640 * 184.02467 * 25 23 22 27 27 Si 1.86800 * 120.00118 * 4.02841 * 25 23 22 28 28 H 1.48495 * 109.47091 * 92.59792 * 27 25 23 29 29 H 1.48503 * 109.46749 * 212.59497 * 27 25 23 30 30 H 1.48499 * 109.46989 * 332.59301 * 27 25 23 31 31 H 1.08997 * 109.47189 * 300.00282 * 1 2 3 32 32 H 1.09004 * 109.46864 * 59.99804 * 1 2 3 33 33 H 1.08995 * 109.46498 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47158 * 307.26367 * 4 2 1 35 35 H 1.09002 * 109.47288 * 187.26052 * 4 2 1 36 36 H 1.09001 * 109.46990 * 300.00313 * 7 5 4 37 37 H 1.08999 * 109.47115 * 60.00198 * 7 5 4 38 38 H 1.08999 * 109.47555 * 179.97438 * 7 5 4 39 39 H 0.96998 * 119.99955 * 24.89687 * 8 5 4 40 40 H 1.07999 * 120.81396 * 359.97438 * 12 11 9 41 41 H 1.08006 * 120.24458 * 179.81042 * 13 12 11 42 42 H 1.08005 * 119.39539 * 180.25342 * 14 13 12 43 43 H 1.08999 * 110.66332 * 278.15335 * 18 17 16 44 44 H 1.08999 * 110.66824 * 41.28309 * 18 17 16 45 45 H 1.09003 * 110.72385 * 204.22550 * 19 18 17 46 46 H 1.08997 * 110.87724 * 81.01806 * 19 18 17 47 47 H 1.08995 * 110.31124 * 263.04667 * 20 19 18 48 48 H 1.08994 * 110.31034 * 140.87052 * 20 19 18 49 49 H 1.09000 * 109.91678 * 333.51766 * 21 17 16 50 50 H 1.09001 * 109.91596 * 94.80429 * 21 17 16 51 51 H 0.96996 * 120.00168 * 95.82882 * 22 2 1 52 52 H 0.96999 * 119.99878 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6843 0.0976 -2.4918 6 1 0.6176 0.3215 -2.4863 7 6 2.0304 -0.7049 -3.7477 8 7 2.4461 1.3490 -2.4866 9 6 1.9783 2.4254 -3.1491 10 8 0.8809 2.3882 -3.6716 11 6 2.7970 3.6481 -3.2401 12 6 4.1946 3.5735 -3.2153 13 6 4.9171 4.7501 -3.2997 14 6 4.2465 5.9550 -3.4150 15 7 2.9293 6.0040 -3.4416 16 6 2.1888 4.9093 -3.3592 17 7 0.8100 5.0074 -3.3916 18 6 0.2529 5.1315 -2.0203 19 6 -1.1497 5.7438 -2.2616 20 6 -0.9009 6.7299 -3.4259 21 6 0.3822 6.2260 -4.1123 22 7 2.0184 -0.6906 1.1961 23 6 2.1332 -0.0116 2.3798 24 1 1.7901 1.0099 2.4519 25 6 2.6905 -0.6364 3.4871 26 7 2.7288 -0.0121 4.6451 27 14 3.3863 -2.3632 3.3334 28 1 4.8370 -2.2867 3.0255 29 1 3.1895 -3.0917 4.6124 30 1 2.6855 -3.0838 2.2404 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 1.5745 -1.7045 -1.3166 35 1 3.1223 -0.8351 -1.1867 36 1 3.0971 -0.9288 -3.7532 37 1 1.4636 -1.6359 -3.7516 38 1 1.7766 -0.1218 -4.6329 39 1 3.2872 1.4028 -2.0064 40 1 4.6963 2.6210 -3.1288 41 1 5.9968 4.7280 -3.2803 42 1 4.8126 6.8721 -3.4849 43 1 0.1692 4.1522 -1.5491 44 1 0.8655 5.7997 -1.4151 45 1 -1.4970 6.2739 -1.3747 46 1 -1.8644 4.9745 -2.5538 47 1 -0.7531 7.7392 -3.0419 48 1 -1.7370 6.7089 -4.1248 49 1 1.1602 6.9869 -4.0497 50 1 0.1759 5.9872 -5.1557 51 1 2.2604 -1.6287 1.1497 52 1 3.1186 -0.4485 5.4187 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134913956.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:49 Heat of formation + Delta-G solvation = 29.152590 kcal Electronic energy + Delta-G solvation = -31497.135056 eV Core-core repulsion = 27497.271089 eV Total energy + Delta-G solvation = -3999.863967 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.16717 -39.36486 -38.33721 -36.94570 -34.72375 -33.28532 -32.81269 -32.04546 -30.73700 -29.27483 -29.01757 -28.99311 -26.39057 -24.80487 -23.88977 -23.47677 -21.64353 -21.19089 -20.92001 -20.46511 -19.81041 -18.13852 -17.61494 -17.26855 -16.97183 -16.08700 -15.62252 -15.26655 -15.05375 -14.72015 -14.52271 -14.35429 -14.05912 -13.82395 -13.62017 -13.45499 -13.22079 -13.18574 -12.79412 -12.61835 -12.48021 -12.34031 -12.18965 -12.15287 -11.98839 -11.70049 -11.48732 -11.31533 -11.29131 -10.97775 -10.70317 -10.67494 -10.53662 -10.20288 -10.17727 -10.08083 -9.95785 -9.84631 -9.60744 -9.33240 -8.93709 -8.88116 -8.38936 -7.26833 -5.78410 -3.13610 0.53820 0.92023 2.86837 3.19185 3.34614 3.37731 3.43647 3.44974 3.63825 4.15119 4.49973 4.53664 4.57160 4.62459 4.68428 4.78292 4.82650 4.90481 5.01870 5.17663 5.18800 5.28618 5.32437 5.36768 5.48302 5.56497 5.58061 5.64003 5.66454 5.70075 5.72981 5.73997 5.79808 5.86362 5.87374 5.94546 5.98406 6.06091 6.13164 6.18824 6.20529 6.26653 6.43515 6.53475 6.54200 6.66979 6.85363 7.04412 7.06879 7.56264 7.68099 8.00134 8.36423 8.41152 9.20778 9.93150 10.13773 11.40080 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010988 B = 0.002970 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.613208 B = 9423.887635 C = 9599.519038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.054 0.946 4 C -0.137 4.137 5 C 0.145 3.855 6 H 0.095 0.905 7 C -0.161 4.161 8 N -0.720 5.720 9 C 0.563 3.437 10 O -0.504 6.504 11 C -0.171 4.171 12 C -0.033 4.033 13 C -0.194 4.194 14 C 0.137 3.863 15 N -0.522 5.522 16 C 0.346 3.654 17 N -0.447 5.447 18 C 0.048 3.952 19 C -0.120 4.120 20 C -0.128 4.128 21 C 0.030 3.970 22 N -0.751 5.751 23 C -0.240 4.240 24 H 0.088 0.912 25 C 0.003 3.997 26 N -0.934 5.934 27 Si 0.887 3.113 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.278 1.278 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.399 0.601 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.159 0.841 43 H 0.089 0.911 44 H 0.051 0.949 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.072 0.928 49 H 0.079 0.921 50 H 0.077 0.923 51 H 0.361 0.639 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.028 10.430 -20.588 23.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.069 3.931 3 H 0.072 0.928 4 C -0.175 4.175 5 C 0.040 3.960 6 H 0.113 0.887 7 C -0.220 4.220 8 N -0.372 5.372 9 C 0.348 3.652 10 O -0.378 6.378 11 C -0.178 4.178 12 C -0.060 4.060 13 C -0.214 4.214 14 C -0.022 4.022 15 N -0.235 5.235 16 C 0.115 3.885 17 N -0.167 5.167 18 C -0.077 4.077 19 C -0.158 4.158 20 C -0.166 4.166 21 C -0.097 4.097 22 N -0.394 5.394 23 C -0.370 4.370 24 H 0.106 0.894 25 C -0.192 4.192 26 N -0.582 5.582 27 Si 0.718 3.282 28 H -0.212 1.212 29 H -0.219 1.219 30 H -0.205 1.205 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.233 0.767 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.176 0.824 43 H 0.108 0.892 44 H 0.070 0.930 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.086 0.914 48 H 0.091 0.909 49 H 0.098 0.902 50 H 0.095 0.905 51 H 0.194 0.806 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.434 10.897 -21.121 23.770 hybrid contribution 1.826 -1.413 0.746 2.427 sum 1.393 9.484 -20.374 22.517 Atomic orbital electron populations 1.22446 0.98904 1.00788 1.00475 1.20160 0.92159 0.95669 0.85108 0.92849 1.22241 1.01834 0.99381 0.94087 1.21026 0.97620 0.82827 0.94505 0.88712 1.22178 1.01636 1.00171 0.97984 1.46065 1.26110 1.11605 1.53458 1.17753 0.85922 0.82237 0.79338 1.90824 1.19174 1.82317 1.45498 1.20630 0.94047 0.94353 1.08762 1.21768 0.92263 0.99615 0.92334 1.22017 1.01762 0.93132 1.04494 1.22747 0.89486 0.98042 0.91936 1.67718 1.08022 1.31279 1.16478 1.19913 0.90658 0.87619 0.90332 1.62316 1.03056 1.37683 1.13686 1.23251 0.95212 1.01703 0.87494 1.22468 0.96341 0.98671 0.98326 1.22384 0.97555 0.98937 0.97758 1.22959 0.97229 0.91167 0.98382 1.42865 1.79922 1.09790 1.06863 1.19056 1.33354 0.98079 0.86545 0.89432 1.24698 1.01191 0.97766 0.95572 1.69709 1.50793 1.37744 0.99974 0.86511 0.79293 0.85776 0.76632 1.21245 1.21869 1.20468 0.92632 0.93909 0.93641 0.90672 0.91317 0.92650 0.91650 0.92420 0.76669 0.83996 0.84098 0.82384 0.89244 0.93033 0.90588 0.90206 0.91371 0.90917 0.90231 0.90482 0.80590 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.28 37.16 0.34 -2.61 16 2 C 0.18 3.27 2.92 -67.93 -0.20 3.07 16 3 H 0.05 1.04 7.59 -51.93 -0.39 0.64 16 4 C -0.14 -1.94 4.37 -26.73 -0.12 -2.05 16 5 C 0.14 1.85 2.52 -67.93 -0.17 1.68 16 6 H 0.09 1.38 5.73 -51.93 -0.30 1.08 16 7 C -0.16 -1.78 9.48 37.16 0.35 -1.42 16 8 N -0.72 -8.96 4.40 -54.88 -0.24 -9.20 16 9 C 0.56 7.95 7.42 -12.52 -0.09 7.85 16 10 O -0.50 -8.59 15.25 5.28 0.08 -8.51 16 11 C -0.17 -2.18 5.86 -104.64 -0.61 -2.79 16 12 C -0.03 -0.32 9.45 -38.90 -0.37 -0.69 16 13 C -0.19 -1.60 10.08 -39.50 -0.40 -2.00 16 14 C 0.14 1.26 11.16 -17.49 -0.20 1.07 16 15 N -0.52 -6.28 8.34 -12.20 -0.10 -6.38 16 16 C 0.35 4.63 5.68 -155.19 -0.88 3.75 16 17 N -0.45 -6.05 3.61 -169.01 -0.61 -6.66 16 18 C 0.05 0.62 6.49 -1.89 -0.01 0.61 16 19 C -0.12 -1.25 7.06 -24.87 -0.18 -1.43 16 20 C -0.13 -1.21 6.93 -25.37 -0.18 -1.38 16 21 C 0.03 0.34 6.56 -2.75 -0.02 0.32 16 22 N -0.75 -17.17 4.91 -53.42 -0.26 -17.43 16 23 C -0.24 -6.65 10.40 -15.05 -0.16 -6.80 16 24 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 25 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 26 N -0.93 -29.07 13.97 55.49 0.78 -28.30 16 27 Si 0.89 21.78 27.95 -169.99 -4.75 17.03 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 30 H -0.28 -6.37 6.24 56.52 0.35 -6.02 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.04 0.68 6.50 -51.93 -0.34 0.34 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.40 4.43 7.63 -40.82 -0.31 4.12 16 40 H 0.14 1.05 7.46 -52.49 -0.39 0.66 16 41 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 42 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 43 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.05 0.66 7.99 -51.93 -0.42 0.24 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.08 0.92 6.37 -51.93 -0.33 0.59 16 50 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 51 H 0.36 8.12 5.56 -40.82 -0.23 7.90 16 52 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 413.20 15.07 6.23 6.23 Total: -1.00 -33.95 413.20 -10.51 -44.46 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -8.65 Total: 11.60 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.97 Total: -2.84 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: -0.44 Total: -67.97 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.08 Total: -8.51 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.75 Total: 17.03 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.95 -10.51 -44.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134913956.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.610 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds