Wall clock time and date at job start Wed Apr 1 2020 04:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46885 * 2 1 4 4 C 1.53002 * 109.46655 * 240.00178 * 2 1 3 5 5 C 1.53002 * 109.46623 * 174.99578 * 4 2 1 6 6 H 1.08997 * 109.47818 * 305.00378 * 5 4 2 7 7 C 1.53000 * 109.47196 * 184.99900 * 5 4 2 8 8 N 1.46504 * 109.47007 * 65.00015 * 5 4 2 9 9 C 1.36930 * 120.00270 * 204.99704 * 8 5 4 10 10 H 1.07999 * 119.99896 * 0.02562 * 9 8 5 11 11 C 1.38809 * 120.00462 * 180.02562 * 9 8 5 12 12 N 1.31621 * 119.99707 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00249 * 179.97438 * 11 9 8 14 14 H 1.48510 * 109.46915 * 90.00114 * 13 11 9 15 15 H 1.48501 * 109.47014 * 209.99455 * 13 11 9 16 16 H 1.48497 * 109.47203 * 330.00003 * 13 11 9 17 17 N 1.46496 * 109.47047 * 120.00174 * 2 1 3 18 18 C 1.34781 * 119.99897 * 274.99737 * 17 2 1 19 19 O 1.21606 * 119.99754 * 0.02562 * 18 17 2 20 20 C 1.47425 * 119.99823 * 180.02562 * 18 17 2 21 21 C 1.39971 * 120.61140 * 354.36887 * 20 18 17 22 22 C 1.38332 * 118.37083 * 179.97438 * 21 20 18 23 23 C 1.38376 * 119.50422 * 0.24901 * 22 21 20 24 24 N 1.31846 * 121.22156 * 359.47643 * 23 22 21 25 25 C 1.32435 * 121.77167 * 0.53658 * 24 23 22 26 26 N 1.38260 * 119.82400 * 179.70935 * 25 24 23 27 27 C 1.48534 * 111.00170 * 279.89979 * 26 25 24 28 28 C 1.54933 * 103.22557 * 159.72182 * 27 26 25 29 29 C 1.54597 * 102.92687 * 322.58809 * 28 27 26 30 30 C 1.47905 * 111.00073 * 37.30156 * 26 25 24 31 31 H 1.08996 * 109.47145 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46894 * 300.00011 * 1 2 3 33 33 H 1.08998 * 109.47617 * 59.99918 * 1 2 3 34 34 H 1.08993 * 109.47175 * 294.99604 * 4 2 1 35 35 H 1.09001 * 109.47260 * 55.00212 * 4 2 1 36 36 H 1.09005 * 109.46850 * 300.00296 * 7 5 4 37 37 H 1.09000 * 109.46998 * 60.00092 * 7 5 4 38 38 H 1.08994 * 109.47215 * 180.02562 * 7 5 4 39 39 H 0.97002 * 119.99876 * 24.99873 * 8 5 4 40 40 H 0.97002 * 119.99646 * 180.02562 * 12 11 9 41 41 H 0.96998 * 120.00340 * 95.00052 * 17 2 1 42 42 H 1.08001 * 120.81317 * 359.94964 * 21 20 18 43 43 H 1.08003 * 120.24774 * 179.97438 * 22 21 20 44 44 H 1.08000 * 119.38772 * 179.72529 * 23 22 21 45 45 H 1.08992 * 110.66749 * 278.15805 * 27 26 25 46 46 H 1.09007 * 110.66126 * 41.29234 * 27 26 25 47 47 H 1.09004 * 110.72387 * 204.23135 * 28 27 26 48 48 H 1.09000 * 110.87864 * 81.01826 * 28 27 26 49 49 H 1.08996 * 110.31086 * 263.04260 * 29 28 27 50 50 H 1.08998 * 110.31013 * 140.86770 * 29 28 27 51 51 H 1.08998 * 109.91972 * 333.50686 * 30 26 25 52 52 H 1.09007 * 109.91607 * 94.80497 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.8571 0.4359 -1.2678 7 6 4.0645 -1.2249 -2.6242 8 7 4.1537 -1.3341 -0.1825 9 6 5.3943 -0.9855 0.2805 10 1 5.9385 -0.1788 -0.1880 11 6 5.9526 -1.6689 1.3520 12 7 5.2895 -2.6523 1.9227 13 14 7.6453 -1.1938 1.9832 14 1 7.5075 -0.1566 3.0371 15 1 8.3156 -2.3908 2.5515 16 1 8.4584 -0.6562 0.8629 17 7 2.0184 -0.6906 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8575 1.1615 2.4118 20 6 2.6390 -0.7131 3.5607 21 6 2.8646 -2.0945 3.5440 22 6 3.3269 -2.6990 4.6992 23 6 3.5465 -1.9311 5.8292 24 7 3.3330 -0.6301 5.8235 25 6 2.8907 -0.0007 4.7455 26 7 2.6750 1.3643 4.7862 27 6 1.3749 1.6788 5.4320 28 6 1.5404 3.1586 5.8599 29 6 3.0191 3.2263 6.3060 30 6 3.7055 2.0397 5.6043 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.7516 -1.7714 -1.2057 35 1 1.6053 -0.2617 -2.1370 36 1 3.7722 -2.2740 -2.6700 37 1 3.6263 -0.6885 -3.4658 38 1 5.1508 -1.1483 -2.6699 39 1 3.6648 -2.0584 0.2385 40 1 5.6795 -3.1296 2.6717 41 1 2.2491 -1.6318 1.1526 42 1 2.6818 -2.6741 2.6513 43 1 3.5108 -3.7630 4.7203 44 1 3.9032 -2.4057 6.7314 45 1 0.5563 1.5735 4.7202 46 1 1.2138 1.0424 6.3023 47 1 0.8758 3.3967 6.6905 48 1 1.3602 3.8286 5.0193 49 1 3.0931 3.1200 7.3882 50 1 3.4683 4.1664 5.9858 51 1 4.1021 1.3478 6.3473 52 1 4.5097 2.4018 4.9637 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134913957.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:55 Heat of formation + Delta-G solvation = 21.522955 kcal Electronic energy + Delta-G solvation = -33108.359411 eV Core-core repulsion = 29108.164598 eV Total energy + Delta-G solvation = -4000.194813 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.83514 -40.23988 -39.03989 -38.11904 -35.68353 -34.29119 -33.60559 -33.34828 -31.71749 -30.22531 -29.87041 -29.78507 -27.56159 -25.55225 -25.39600 -24.50421 -22.56781 -22.02031 -21.77410 -21.54642 -21.05213 -19.07369 -18.73491 -18.04252 -17.75453 -17.01990 -16.60186 -16.34622 -15.88497 -15.77556 -15.60903 -15.37988 -15.28452 -15.01863 -14.58568 -14.31603 -14.10987 -13.93693 -13.89354 -13.55003 -13.43540 -13.30785 -13.11782 -13.09155 -12.93943 -12.91561 -12.78053 -12.58453 -12.29187 -12.25271 -12.15301 -12.12507 -11.68213 -11.57453 -11.47348 -11.37385 -10.90256 -10.84277 -10.61429 -10.54740 -9.95797 -9.69370 -9.19494 -8.75232 -7.83040 -5.00908 -0.12564 0.38914 1.38696 1.44794 1.46379 2.16017 2.50583 2.59689 2.77496 3.01546 3.48346 3.51827 3.74478 3.83012 3.87568 4.00399 4.04620 4.10056 4.15431 4.22895 4.28235 4.31193 4.42740 4.44642 4.54267 4.60985 4.67578 4.74190 4.78765 4.85826 4.87067 4.90253 4.91827 4.96195 4.99556 5.07511 5.11605 5.15996 5.17718 5.20646 5.27434 5.35399 5.41478 5.45419 5.61978 5.63092 5.66412 5.82368 5.90484 6.34299 6.41229 6.82309 6.97507 7.50467 7.60530 8.20715 8.49560 9.37694 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009099 B = 0.005319 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3076.669405 B = 5262.614351 C = 6710.449839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.149 3.851 3 H 0.053 0.947 4 C -0.119 4.119 5 C 0.162 3.838 6 H 0.024 0.976 7 C -0.152 4.152 8 N -0.715 5.715 9 C -0.225 4.225 10 H 0.048 0.952 11 C -0.039 4.039 12 N -0.922 5.922 13 Si 0.929 3.071 14 H -0.314 1.314 15 H -0.292 1.292 16 H -0.286 1.286 17 N -0.693 5.693 18 C 0.566 3.434 19 O -0.554 6.554 20 C -0.184 4.184 21 C 0.018 3.982 22 C -0.181 4.181 23 C 0.121 3.879 24 N -0.544 5.544 25 C 0.315 3.685 26 N -0.462 5.462 27 C 0.056 3.944 28 C -0.109 4.109 29 C -0.116 4.116 30 C 0.028 3.972 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.026 0.974 39 H 0.375 0.625 40 H 0.249 0.751 41 H 0.400 0.600 42 H 0.141 0.859 43 H 0.160 0.840 44 H 0.185 0.815 45 H 0.071 0.929 46 H 0.046 0.954 47 H 0.100 0.900 48 H 0.070 0.930 49 H 0.085 0.915 50 H 0.080 0.920 51 H 0.061 0.939 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.674 1.646 3.740 12.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.045 3.955 3 H 0.071 0.929 4 C -0.157 4.157 5 C 0.054 3.946 6 H 0.042 0.958 7 C -0.212 4.212 8 N -0.358 5.358 9 C -0.358 4.358 10 H 0.066 0.934 11 C -0.234 4.234 12 N -0.572 5.572 13 Si 0.763 3.237 14 H -0.244 1.244 15 H -0.218 1.218 16 H -0.212 1.212 17 N -0.346 5.346 18 C 0.352 3.648 19 O -0.433 6.433 20 C -0.191 4.191 21 C -0.009 4.009 22 C -0.201 4.201 23 C -0.038 4.038 24 N -0.257 5.257 25 C 0.085 3.915 26 N -0.184 5.184 27 C -0.069 4.069 28 C -0.147 4.147 29 C -0.154 4.154 30 C -0.099 4.099 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.125 0.875 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.046 0.954 39 H 0.210 0.790 40 H 0.058 0.942 41 H 0.237 0.763 42 H 0.158 0.842 43 H 0.178 0.822 44 H 0.202 0.798 45 H 0.089 0.911 46 H 0.064 0.936 47 H 0.119 0.881 48 H 0.089 0.911 49 H 0.104 0.896 50 H 0.099 0.901 51 H 0.080 0.920 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.554 3.247 3.950 12.635 hybrid contribution 1.775 -1.238 0.414 2.204 sum -9.779 2.008 4.364 10.895 Atomic orbital electron populations 1.22086 0.93927 1.02567 1.02173 1.20882 0.94205 0.96126 0.84292 0.92902 1.22118 0.94733 1.01553 0.97308 1.20475 0.92231 0.94228 0.87684 0.95757 1.22260 0.99943 1.00872 0.98149 1.42413 1.17538 1.40055 1.35805 1.19158 0.94437 1.11968 1.10226 0.93428 1.24773 0.99426 0.99623 0.99594 1.69552 1.37507 1.24377 1.25792 0.85833 0.83975 0.76240 0.77658 1.24378 1.21805 1.21181 1.45907 1.65975 1.13973 1.08717 1.17853 0.77272 0.86173 0.83466 1.90700 1.51227 1.15785 1.85574 1.20705 1.08421 0.95203 0.94778 1.21677 0.88957 0.92186 0.98047 1.22191 1.01616 1.02939 0.93342 1.23176 0.93088 0.88255 0.99248 1.67682 1.16757 1.12409 1.28853 1.20027 0.92432 0.90664 0.88380 1.62467 1.04230 1.03100 1.48576 1.23122 0.90038 0.97622 0.96163 1.22440 0.96520 0.94068 1.01696 1.22338 0.95428 0.97222 1.00461 1.22947 0.94752 0.96734 0.95473 0.91381 0.94322 0.89720 0.90447 0.87456 0.93157 0.91374 0.95434 0.78998 0.94160 0.76256 0.84153 0.82239 0.79787 0.91065 0.93591 0.88114 0.91095 0.89603 0.90148 0.92032 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.48 71.98 0.68 -3.05 16 2 C 0.15 4.70 2.57 44.99 0.12 4.81 16 3 H 0.05 1.99 7.58 -2.38 -0.02 1.97 16 4 C -0.12 -3.24 4.43 30.60 0.14 -3.11 16 5 C 0.16 5.84 2.89 44.99 0.13 5.97 16 6 H 0.02 0.99 8.08 -2.39 -0.02 0.97 16 7 C -0.15 -4.90 9.49 71.98 0.68 -4.21 16 8 N -0.72 -31.53 3.84 -322.94 -1.24 -32.77 16 9 C -0.23 -11.81 9.93 84.03 0.83 -10.98 16 10 H 0.05 2.62 7.83 -2.91 -0.02 2.60 16 11 C -0.04 -2.08 5.50 84.86 0.47 -1.61 16 12 N -0.92 -46.80 11.58 21.65 0.25 -46.55 16 13 Si 0.93 46.36 29.55 68.60 2.03 48.39 16 14 H -0.31 -16.70 7.11 99.48 0.71 -16.00 16 15 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 16 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 17 N -0.69 -25.17 3.75 -445.79 -1.67 -26.85 16 18 C 0.57 23.90 7.72 86.66 0.67 24.57 16 19 O -0.55 -25.70 14.45 -4.05 -0.06 -25.76 16 20 C -0.18 -7.57 5.91 -19.88 -0.12 -7.68 16 21 C 0.02 0.67 8.22 22.71 0.19 0.85 16 22 C -0.18 -5.75 10.09 22.33 0.23 -5.52 16 23 C 0.12 3.78 11.16 84.72 0.95 4.73 16 24 N -0.54 -20.06 8.66 -192.51 -1.67 -21.73 16 25 C 0.31 12.78 5.53 133.65 0.74 13.52 16 26 N -0.46 -17.95 3.31 -688.62 -2.28 -20.23 16 27 C 0.06 1.78 6.31 86.65 0.55 2.33 16 28 C -0.11 -2.72 7.06 31.80 0.22 -2.49 16 29 C -0.12 -2.96 6.93 31.48 0.22 -2.75 16 30 C 0.03 0.99 6.59 86.45 0.57 1.56 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.38 16.55 5.70 -92.71 -0.53 16.03 16 40 H 0.25 12.63 8.31 -92.71 -0.77 11.86 16 41 H 0.40 14.33 4.64 -92.71 -0.43 13.90 16 42 H 0.14 5.04 6.49 -2.91 -0.02 5.02 16 43 H 0.16 4.12 8.06 -2.91 -0.02 4.10 16 44 H 0.19 4.25 8.06 -2.91 -0.02 4.23 16 45 H 0.07 2.41 8.00 -2.39 -0.02 2.39 16 46 H 0.05 1.42 7.99 -2.38 -0.02 1.40 16 47 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 48 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 50 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 51 H 0.06 2.22 6.56 -2.39 -0.02 2.20 16 52 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -65.64 409.43 2.58 -63.06 By element: Atomic # 1 Polarization: 45.53 SS G_CDS: -0.04 Total: 45.49 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 7.26 Total: 16.94 kcal Atomic # 7 Polarization: -141.51 SS G_CDS: -6.61 Total: -148.11 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.06 Total: -25.76 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -65.64 2.58 -63.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134913957.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.582 kcal (2) G-P(sol) polarization free energy of solvation -65.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds