Wall clock time and date at job start Wed Apr 1 2020 04:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 C 1.53002 * 109.47269 * 185.00423 * 4 2 1 6 6 H 1.09004 * 109.46656 * 304.99461 * 5 4 2 7 7 C 1.52999 * 109.47235 * 185.00066 * 5 4 2 8 8 N 1.46495 * 109.47317 * 64.99221 * 5 4 2 9 9 C 1.34777 * 120.00230 * 204.99663 * 8 5 4 10 10 O 1.21596 * 119.99664 * 0.02562 * 9 8 5 11 11 C 1.47536 * 120.00508 * 180.02562 * 9 8 5 12 12 C 1.40351 * 120.47875 * 180.02562 * 11 9 8 13 13 C 1.36850 * 118.49421 * 180.02562 * 12 11 9 14 14 C 1.39399 * 119.37765 * 0.02562 * 13 12 11 15 15 N 1.38466 * 119.53832 * 179.97438 * 14 13 12 16 16 C 1.48532 * 110.99669 * 62.60424 * 15 14 13 17 17 C 1.54936 * 103.22702 * 159.72291 * 16 15 14 18 18 C 1.54599 * 102.91709 * 322.58286 * 17 16 15 19 19 C 1.47901 * 110.99840 * 179.97438 * 15 14 13 20 20 N 1.32604 * 120.92366 * 0.02562 * 14 13 12 21 21 C 1.31675 * 121.63351 * 359.69814 * 20 14 13 22 22 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 23 23 C 1.36931 * 119.99788 * 84.99932 * 22 2 1 24 24 H 1.08002 * 120.00438 * 0.02562 * 23 22 2 25 25 C 1.38817 * 119.99680 * 179.72358 * 23 22 2 26 26 N 1.31614 * 119.99888 * 0.27479 * 25 23 22 27 27 Si 1.86803 * 119.99862 * 180.27671 * 25 23 22 28 28 H 1.48498 * 109.47174 * 90.00121 * 27 25 23 29 29 H 1.48501 * 109.47062 * 210.00072 * 27 25 23 30 30 H 1.48504 * 109.46913 * 329.99871 * 27 25 23 31 31 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 33 33 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 34 34 H 1.09000 * 109.46805 * 304.99883 * 4 2 1 35 35 H 1.08992 * 109.47408 * 64.99820 * 4 2 1 36 36 H 1.09005 * 109.46583 * 299.99807 * 7 5 4 37 37 H 1.09001 * 109.47265 * 59.99339 * 7 5 4 38 38 H 1.08991 * 109.47415 * 179.97438 * 7 5 4 39 39 H 0.97000 * 120.00046 * 25.00827 * 8 5 4 40 40 H 1.08002 * 120.75028 * 359.97438 * 12 11 9 41 41 H 1.07999 * 120.31236 * 179.97438 * 13 12 11 42 42 H 1.09003 * 110.66526 * 278.15572 * 16 15 14 43 43 H 1.08997 * 110.67041 * 41.28425 * 16 15 14 44 44 H 1.08998 * 110.72509 * 204.23139 * 17 16 15 45 45 H 1.08999 * 110.87806 * 81.01279 * 17 16 15 46 46 H 1.09002 * 110.31264 * 263.04035 * 18 17 16 47 47 H 1.09004 * 110.30898 * 140.87841 * 18 17 16 48 48 H 1.08993 * 109.92233 * 333.51537 * 19 15 14 49 49 H 1.09004 * 109.91040 * 94.80558 * 19 15 14 50 50 H 1.08002 * 119.73653 * 180.28934 * 21 20 14 51 51 H 0.97000 * 119.99792 * 264.99726 * 22 2 1 52 52 H 0.97005 * 119.99715 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 1 3.9954 -0.9922 0.3868 7 6 4.0852 -1.4383 2.4924 8 7 3.9479 0.7894 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9376 0.4321 0.5720 11 6 5.5472 2.6261 1.2671 12 6 6.8079 3.0786 0.8479 13 6 7.1239 4.3969 1.0354 14 6 6.1928 5.2450 1.6329 15 7 6.5092 6.5793 1.8248 16 6 6.7382 7.2639 0.5267 17 6 6.5482 8.7611 0.8772 18 6 5.3895 8.7322 1.9002 19 6 5.3912 7.3017 2.4694 20 7 5.0086 4.7916 2.0210 21 6 4.6629 3.5321 1.8542 22 7 2.0183 -0.6907 -1.1962 23 6 2.1491 -0.0075 -2.3757 24 1 1.8926 1.0405 -2.4242 25 6 2.6172 -0.6605 -3.5077 26 7 2.9303 -1.9375 -3.4485 27 14 2.8029 0.2732 -5.1149 28 1 4.1654 0.8587 -5.1927 29 1 2.5981 -0.6569 -6.2543 30 1 1.7929 1.3602 -5.1754 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6054 -0.2618 2.1370 35 1 1.7517 -1.7715 1.2056 36 1 3.6546 -1.0593 3.4193 37 1 3.8002 -2.4819 2.3595 38 1 5.1715 -1.3617 2.5381 39 1 3.3284 1.4129 1.9028 40 1 7.5129 2.4017 0.3884 41 1 8.0859 4.7764 0.7242 42 1 7.7504 7.0784 0.1672 43 1 6.0023 6.9452 -0.2115 44 1 6.2672 9.3318 -0.0079 45 1 7.4512 9.1720 1.3287 46 1 4.4415 8.9405 1.4041 47 1 5.5684 9.4563 2.6951 48 1 4.4474 6.8085 2.2374 49 1 5.5420 7.3320 3.5486 50 1 3.6885 3.1967 2.1776 51 1 2.2490 -1.6318 -1.1526 52 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135698203.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:08 Heat of formation + Delta-G solvation = 20.014203 kcal Electronic energy + Delta-G solvation = -30761.381212 eV Core-core repulsion = 26761.120975 eV Total energy + Delta-G solvation = -4000.260237 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.11863 -39.61629 -38.23115 -36.75772 -34.48353 -33.24826 -32.71784 -32.11319 -30.93699 -29.30747 -29.01676 -28.54783 -26.30697 -24.42353 -23.87026 -23.57785 -22.07013 -21.24791 -20.81858 -20.32384 -19.70919 -18.19221 -17.54572 -17.06797 -16.87407 -16.12709 -15.51734 -15.07817 -14.98438 -14.70559 -14.62961 -14.17450 -13.97932 -13.89305 -13.63531 -13.40429 -13.22987 -13.05254 -12.77532 -12.71556 -12.49381 -12.40136 -12.12735 -11.96468 -11.72968 -11.71787 -11.58727 -11.55004 -11.03184 -10.94166 -10.80716 -10.60477 -10.41394 -10.23425 -10.20640 -10.05906 -9.89308 -9.87082 -9.59382 -9.41482 -8.85419 -8.74537 -8.38374 -6.89292 -5.70426 -2.98123 0.56733 1.13225 2.91999 3.31725 3.41396 3.46910 3.51489 3.53070 3.84675 4.02424 4.23813 4.42690 4.58304 4.64384 4.74276 4.78560 4.93013 4.94551 4.97595 5.09091 5.16193 5.31954 5.41114 5.43683 5.44668 5.46238 5.50595 5.60687 5.63719 5.68109 5.70892 5.71397 5.87470 5.90756 5.96244 5.99717 6.04380 6.14949 6.19951 6.27260 6.31031 6.38134 6.46019 6.58900 6.72930 6.81646 6.84553 6.94239 7.09235 7.66336 7.74719 7.77418 8.47925 8.51121 9.59371 10.16815 10.51067 11.52355 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009640 B = 0.002929 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.963344 B = 9558.011179 C =10742.672443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.144 3.856 6 H 0.107 0.893 7 C -0.161 4.161 8 N -0.711 5.711 9 C 0.565 3.435 10 O -0.529 6.529 11 C -0.202 4.202 12 C 0.002 3.998 13 C -0.186 4.186 14 C 0.319 3.681 15 N -0.463 5.463 16 C 0.042 3.958 17 C -0.124 4.124 18 C -0.134 4.134 19 C 0.034 3.966 20 N -0.522 5.522 21 C 0.160 3.840 22 N -0.720 5.720 23 C -0.233 4.233 24 H 0.066 0.934 25 C -0.012 4.012 26 N -0.931 5.931 27 Si 0.902 3.098 28 H -0.291 1.291 29 H -0.292 1.292 30 H -0.284 1.284 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.392 0.608 40 H 0.149 0.851 41 H 0.141 0.859 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.081 0.919 50 H 0.159 0.841 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.125 17.449 15.399 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.040 3.960 6 H 0.125 0.875 7 C -0.219 4.219 8 N -0.362 5.362 9 C 0.351 3.649 10 O -0.405 6.405 11 C -0.208 4.208 12 C -0.025 4.025 13 C -0.208 4.208 14 C 0.086 3.914 15 N -0.181 5.181 16 C -0.083 4.083 17 C -0.162 4.162 18 C -0.172 4.172 19 C -0.093 4.093 20 N -0.236 5.236 21 C 0.001 3.999 22 N -0.362 5.362 23 C -0.365 4.365 24 H 0.084 0.916 25 C -0.208 4.208 26 N -0.579 5.579 27 Si 0.733 3.267 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.209 1.209 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.226 0.774 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.110 0.890 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.103 0.897 49 H 0.100 0.900 50 H 0.176 0.824 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.581 17.622 15.593 24.183 hybrid contribution -0.240 -0.192 -1.496 1.528 sum 5.340 17.430 14.096 23.044 Atomic orbital electron populations 1.22457 0.99531 1.00815 0.99758 1.20222 0.91569 0.95504 0.86574 0.93718 1.22180 0.93675 1.02327 0.98832 1.21060 0.95143 0.79761 0.99993 0.87488 1.22185 1.01556 1.00209 0.97979 1.45872 1.16070 1.11833 1.62414 1.17821 0.82255 0.86661 0.78201 1.90810 1.51151 1.55804 1.42770 1.20978 0.97376 0.95701 1.06746 1.21353 0.94804 0.94926 0.91369 1.21259 1.01096 0.93698 1.04744 1.20082 0.88547 0.91758 0.90969 1.61772 1.37822 0.99138 1.19397 1.23355 1.02578 0.93599 0.88762 1.22513 0.99290 0.94994 0.99378 1.22458 0.98971 0.96754 0.99002 1.22909 0.94078 0.92643 0.99661 1.67573 1.16791 1.16674 1.22527 1.22745 0.98209 0.87427 0.91538 1.42387 1.77972 1.10549 1.05245 1.19143 1.36264 0.93651 0.87421 0.91586 1.24686 1.02213 0.95942 0.97937 1.69644 1.50867 1.08607 1.28832 0.86271 0.77750 0.78647 0.84025 1.21823 1.21817 1.20935 0.93511 0.94717 0.92926 0.92023 0.90502 0.93118 0.91656 0.92494 0.77381 0.83288 0.84136 0.89000 0.92326 0.90373 0.90349 0.91076 0.90727 0.89698 0.90030 0.82352 0.78327 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 9.49 37.16 0.35 -2.52 16 2 C 0.17 3.22 2.84 -67.93 -0.19 3.03 16 3 H 0.04 0.86 7.56 -51.93 -0.39 0.47 16 4 C -0.13 -1.97 4.29 -26.73 -0.11 -2.09 16 5 C 0.14 2.32 2.52 -67.93 -0.17 2.15 16 6 H 0.11 2.27 7.05 -51.93 -0.37 1.90 16 7 C -0.16 -2.20 9.48 37.16 0.35 -1.85 16 8 N -0.71 -10.41 4.40 -54.85 -0.24 -10.65 16 9 C 0.56 9.52 7.73 -12.47 -0.10 9.43 16 10 O -0.53 -11.12 16.07 5.28 0.08 -11.04 16 11 C -0.20 -2.85 5.89 -104.82 -0.62 -3.47 16 12 C 0.00 0.02 9.65 -39.29 -0.38 -0.36 16 13 C -0.19 -2.12 9.38 -39.65 -0.37 -2.50 16 14 C 0.32 3.79 6.20 -155.27 -0.96 2.83 16 15 N -0.46 -4.68 5.28 -169.29 -0.89 -5.58 16 16 C 0.04 0.34 6.03 -1.90 -0.01 0.33 16 17 C -0.12 -0.78 7.06 -24.87 -0.18 -0.95 16 18 C -0.13 -0.90 6.93 -25.39 -0.18 -1.07 16 19 C 0.03 0.31 6.34 -2.77 -0.02 0.29 16 20 N -0.52 -6.52 8.11 -12.14 -0.10 -6.62 16 21 C 0.16 1.95 10.71 -17.13 -0.18 1.77 16 22 N -0.72 -17.61 4.49 -53.42 -0.24 -17.85 16 23 C -0.23 -6.50 9.93 -15.06 -0.15 -6.65 16 24 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 25 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 26 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 27 Si 0.90 23.00 29.55 -169.99 -5.02 17.97 16 28 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 29 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 30 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.39 4.52 6.65 -40.82 -0.27 4.24 16 40 H 0.15 1.95 7.73 -52.49 -0.41 1.54 16 41 H 0.14 1.28 8.01 -52.49 -0.42 0.86 16 42 H 0.09 0.64 8.11 -51.93 -0.42 0.21 16 43 H 0.06 0.53 7.99 -51.93 -0.42 0.12 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.08 0.88 6.48 -51.93 -0.34 0.55 16 49 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.16 1.52 6.41 -52.49 -0.34 1.18 16 51 H 0.38 10.06 7.80 -40.82 -0.32 9.74 16 52 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 418.04 15.07 6.30 6.30 Total: -1.00 -34.05 418.04 -11.12 -45.17 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -8.73 Total: 12.17 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -3.01 Total: -2.07 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -0.75 Total: -68.51 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.05 -11.12 -45.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135698203.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.185 kcal (2) G-P(sol) polarization free energy of solvation -34.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds