Wall clock time and date at job start Wed Apr 1 2020 04:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 C 1.53002 * 109.47269 * 185.00423 * 4 2 1 6 6 H 1.09004 * 109.46656 * 304.99461 * 5 4 2 7 7 C 1.52999 * 109.47235 * 185.00066 * 5 4 2 8 8 N 1.46495 * 109.47317 * 64.99221 * 5 4 2 9 9 C 1.34777 * 120.00230 * 204.99663 * 8 5 4 10 10 O 1.21596 * 119.99664 * 0.02562 * 9 8 5 11 11 C 1.47536 * 120.00508 * 180.02562 * 9 8 5 12 12 C 1.40351 * 120.47875 * 180.02562 * 11 9 8 13 13 C 1.36850 * 118.49421 * 180.02562 * 12 11 9 14 14 C 1.39399 * 119.37765 * 0.02562 * 13 12 11 15 15 N 1.38466 * 119.53832 * 179.97438 * 14 13 12 16 16 C 1.48532 * 110.99669 * 62.60424 * 15 14 13 17 17 C 1.54936 * 103.22702 * 159.72291 * 16 15 14 18 18 C 1.54599 * 102.91709 * 322.58286 * 17 16 15 19 19 C 1.47901 * 110.99840 * 179.97438 * 15 14 13 20 20 N 1.32604 * 120.92366 * 0.02562 * 14 13 12 21 21 C 1.31675 * 121.63351 * 359.69814 * 20 14 13 22 22 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 23 23 C 1.36931 * 119.99788 * 84.99932 * 22 2 1 24 24 H 1.08002 * 120.00438 * 0.02562 * 23 22 2 25 25 C 1.38817 * 119.99680 * 179.72358 * 23 22 2 26 26 N 1.31614 * 119.99888 * 0.27479 * 25 23 22 27 27 Si 1.86803 * 119.99862 * 180.27671 * 25 23 22 28 28 H 1.48498 * 109.47174 * 90.00121 * 27 25 23 29 29 H 1.48501 * 109.47062 * 210.00072 * 27 25 23 30 30 H 1.48504 * 109.46913 * 329.99871 * 27 25 23 31 31 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 33 33 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 34 34 H 1.09000 * 109.46805 * 304.99883 * 4 2 1 35 35 H 1.08992 * 109.47408 * 64.99820 * 4 2 1 36 36 H 1.09005 * 109.46583 * 299.99807 * 7 5 4 37 37 H 1.09001 * 109.47265 * 59.99339 * 7 5 4 38 38 H 1.08991 * 109.47415 * 179.97438 * 7 5 4 39 39 H 0.97000 * 120.00046 * 25.00827 * 8 5 4 40 40 H 1.08002 * 120.75028 * 359.97438 * 12 11 9 41 41 H 1.07999 * 120.31236 * 179.97438 * 13 12 11 42 42 H 1.09003 * 110.66526 * 278.15572 * 16 15 14 43 43 H 1.08997 * 110.67041 * 41.28425 * 16 15 14 44 44 H 1.08998 * 110.72509 * 204.23139 * 17 16 15 45 45 H 1.08999 * 110.87806 * 81.01279 * 17 16 15 46 46 H 1.09002 * 110.31264 * 263.04035 * 18 17 16 47 47 H 1.09004 * 110.30898 * 140.87841 * 18 17 16 48 48 H 1.08993 * 109.92233 * 333.51537 * 19 15 14 49 49 H 1.09004 * 109.91040 * 94.80558 * 19 15 14 50 50 H 1.08002 * 119.73653 * 180.28934 * 21 20 14 51 51 H 0.97000 * 119.99792 * 264.99726 * 22 2 1 52 52 H 0.97005 * 119.99715 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 1 3.9954 -0.9922 0.3868 7 6 4.0852 -1.4383 2.4924 8 7 3.9479 0.7894 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9376 0.4321 0.5720 11 6 5.5472 2.6261 1.2671 12 6 6.8079 3.0786 0.8479 13 6 7.1239 4.3969 1.0354 14 6 6.1928 5.2450 1.6329 15 7 6.5092 6.5793 1.8248 16 6 6.7382 7.2639 0.5267 17 6 6.5482 8.7611 0.8772 18 6 5.3895 8.7322 1.9002 19 6 5.3912 7.3017 2.4694 20 7 5.0086 4.7916 2.0210 21 6 4.6629 3.5321 1.8542 22 7 2.0183 -0.6907 -1.1962 23 6 2.1491 -0.0075 -2.3757 24 1 1.8926 1.0405 -2.4242 25 6 2.6172 -0.6605 -3.5077 26 7 2.9303 -1.9375 -3.4485 27 14 2.8029 0.2732 -5.1149 28 1 4.1654 0.8587 -5.1927 29 1 2.5981 -0.6569 -6.2543 30 1 1.7929 1.3602 -5.1754 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6054 -0.2618 2.1370 35 1 1.7517 -1.7715 1.2056 36 1 3.6546 -1.0593 3.4193 37 1 3.8002 -2.4819 2.3595 38 1 5.1715 -1.3617 2.5381 39 1 3.3284 1.4129 1.9028 40 1 7.5129 2.4017 0.3884 41 1 8.0859 4.7764 0.7242 42 1 7.7504 7.0784 0.1672 43 1 6.0023 6.9452 -0.2115 44 1 6.2672 9.3318 -0.0079 45 1 7.4512 9.1720 1.3287 46 1 4.4415 8.9405 1.4041 47 1 5.5684 9.4563 2.6951 48 1 4.4474 6.8085 2.2374 49 1 5.5420 7.3320 3.5486 50 1 3.6885 3.1967 2.1776 51 1 2.2490 -1.6318 -1.1526 52 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135698203.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:07 Heat of formation + Delta-G solvation = -2.297116 kcal Electronic energy + Delta-G solvation = -30762.348703 eV Core-core repulsion = 26761.120975 eV Total energy + Delta-G solvation = -4001.227728 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.06212 -40.78117 -39.13307 -38.23059 -36.09689 -34.25043 -33.92243 -33.59492 -32.19491 -30.47974 -29.98168 -29.85388 -27.58773 -25.70192 -25.33741 -24.78897 -23.03510 -22.21417 -21.60510 -21.53483 -21.18795 -19.42333 -19.04828 -18.40499 -17.84600 -17.06251 -16.72926 -16.51062 -16.10164 -15.93913 -15.69461 -15.60393 -15.49021 -15.06926 -14.72718 -14.51806 -14.42192 -14.22692 -14.04768 -13.73669 -13.56888 -13.37558 -13.27319 -13.18162 -13.08392 -12.94437 -12.80398 -12.65187 -12.27803 -12.24986 -12.18768 -12.13127 -11.82080 -11.55549 -11.47153 -11.41724 -11.29550 -11.08246 -10.92786 -10.90429 -10.50160 -10.04172 -9.28198 -8.94208 -7.91945 -5.16926 -0.45103 0.16263 1.41212 1.43841 1.50732 1.78826 2.18169 2.47424 2.55813 2.80069 3.21521 3.42467 3.60005 3.68282 3.74129 3.82509 3.86553 3.97511 3.99282 4.04437 4.13808 4.17287 4.31528 4.41409 4.51248 4.54395 4.55765 4.64921 4.69921 4.77779 4.80389 4.84398 4.89306 4.94747 4.96735 4.97403 5.03133 5.08248 5.11785 5.13432 5.24922 5.25377 5.30841 5.36366 5.42877 5.51235 5.55334 5.62971 5.65907 5.98182 6.31430 6.57166 6.72061 7.27512 7.37129 8.17893 8.37376 9.31871 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009640 B = 0.002929 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.963344 B = 9558.011179 C =10742.672443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.163 3.837 3 H 0.042 0.958 4 C -0.118 4.118 5 C 0.147 3.853 6 H 0.048 0.952 7 C -0.151 4.151 8 N -0.698 5.698 9 C 0.560 3.440 10 O -0.584 6.584 11 C -0.223 4.223 12 C -0.009 4.009 13 C -0.183 4.183 14 C 0.318 3.682 15 N -0.467 5.467 16 C 0.038 3.962 17 C -0.118 4.118 18 C -0.130 4.130 19 C 0.031 3.969 20 N -0.530 5.530 21 C 0.169 3.831 22 N -0.731 5.731 23 C -0.224 4.224 24 H 0.068 0.932 25 C -0.079 4.079 26 N -0.968 5.968 27 Si 0.960 3.040 28 H -0.296 1.296 29 H -0.295 1.295 30 H -0.268 1.268 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.028 0.972 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.036 0.964 39 H 0.410 0.590 40 H 0.141 0.859 41 H 0.163 0.837 42 H 0.104 0.896 43 H 0.047 0.953 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.088 0.912 48 H 0.071 0.929 49 H 0.081 0.919 50 H 0.185 0.815 51 H 0.370 0.630 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.034 20.316 17.324 27.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.055 3.945 3 H 0.060 0.940 4 C -0.157 4.157 5 C 0.042 3.958 6 H 0.066 0.934 7 C -0.210 4.210 8 N -0.349 5.349 9 C 0.348 3.652 10 O -0.465 6.465 11 C -0.230 4.230 12 C -0.035 4.035 13 C -0.205 4.205 14 C 0.086 3.914 15 N -0.185 5.185 16 C -0.087 4.087 17 C -0.156 4.156 18 C -0.168 4.168 19 C -0.096 4.096 20 N -0.244 5.244 21 C 0.010 3.990 22 N -0.371 5.371 23 C -0.356 4.356 24 H 0.086 0.914 25 C -0.271 4.271 26 N -0.620 5.620 27 Si 0.790 3.210 28 H -0.224 1.224 29 H -0.221 1.221 30 H -0.193 1.193 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.047 0.953 34 H 0.127 0.873 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.247 0.753 40 H 0.159 0.841 41 H 0.181 0.819 42 H 0.122 0.878 43 H 0.066 0.934 44 H 0.110 0.890 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.107 0.893 48 H 0.089 0.911 49 H 0.099 0.901 50 H 0.202 0.798 51 H 0.202 0.798 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.429 20.566 17.573 27.411 hybrid contribution 0.098 -0.959 -1.982 2.203 sum 4.527 19.607 15.592 25.457 Atomic orbital electron populations 1.22306 0.97674 1.00898 1.00721 1.20532 0.92672 0.95243 0.86059 0.93975 1.22095 0.92554 1.02433 0.98588 1.20872 0.95766 0.80611 0.98513 0.93352 1.22086 1.00377 1.00324 0.98166 1.45742 1.15759 1.11758 1.61664 1.18282 0.82214 0.87452 0.77255 1.90778 1.52812 1.57434 1.45444 1.20840 0.98532 0.94495 1.09118 1.21418 0.94687 0.95740 0.91699 1.21423 1.01997 0.92768 1.04274 1.20406 0.88315 0.92733 0.89951 1.61802 1.37870 0.98446 1.20341 1.23490 1.02970 0.94688 0.87556 1.22533 0.99509 0.93655 0.99861 1.22457 0.99435 0.95374 0.99507 1.22959 0.92986 0.93877 0.99761 1.67693 1.17154 1.16500 1.23056 1.23062 0.98668 0.86969 0.90300 1.42596 1.78190 1.10097 1.06245 1.19487 1.33844 0.93738 0.88575 0.91366 1.25424 1.03587 0.96858 1.01186 1.69796 1.53003 1.10081 1.29118 0.85328 0.77511 0.77727 0.80428 1.22404 1.22143 1.19299 0.93880 0.90399 0.95268 0.87309 0.90369 0.89832 0.91042 0.94431 0.75258 0.84131 0.81918 0.87773 0.93423 0.88969 0.89445 0.90713 0.89336 0.91102 0.90062 0.79808 0.79817 0.94401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.04 9.49 71.98 0.68 -4.36 16 2 C 0.16 5.90 2.84 44.99 0.13 6.03 16 3 H 0.04 1.55 7.56 -2.39 -0.02 1.54 16 4 C -0.12 -3.29 4.29 30.60 0.13 -3.16 16 5 C 0.15 4.68 2.52 44.99 0.11 4.80 16 6 H 0.05 2.16 7.05 -2.38 -0.02 2.14 16 7 C -0.15 -3.98 9.48 71.98 0.68 -3.30 16 8 N -0.70 -20.00 4.40 -445.70 -1.96 -21.97 16 9 C 0.56 19.45 7.73 86.70 0.67 20.12 16 10 O -0.58 -26.17 16.07 -4.02 -0.06 -26.24 16 11 C -0.22 -6.36 5.89 -19.99 -0.12 -6.48 16 12 C -0.01 -0.25 9.65 22.46 0.22 -0.03 16 13 C -0.18 -4.05 9.38 22.22 0.21 -3.84 16 14 C 0.32 7.18 6.20 133.25 0.83 8.00 16 15 N -0.47 -8.60 5.28 -689.52 -3.64 -12.25 16 16 C 0.04 0.53 6.03 86.65 0.52 1.06 16 17 C -0.12 -1.15 7.06 31.80 0.22 -0.92 16 18 C -0.13 -1.41 6.93 31.46 0.22 -1.19 16 19 C 0.03 0.50 6.34 86.43 0.55 1.05 16 20 N -0.53 -12.52 8.11 -192.32 -1.56 -14.08 16 21 C 0.17 3.92 10.71 85.03 0.91 4.83 16 22 N -0.73 -36.34 4.49 -322.93 -1.45 -37.79 16 23 C -0.22 -12.66 9.93 84.04 0.83 -11.82 16 24 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 25 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 26 N -0.97 -61.49 13.06 21.65 0.28 -61.21 16 27 Si 0.96 48.31 29.55 68.60 2.03 50.34 16 28 H -0.30 -15.01 7.11 99.48 0.71 -14.31 16 29 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 30 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.41 8.49 6.65 -92.71 -0.62 7.88 16 40 H 0.14 3.94 7.73 -2.91 -0.02 3.92 16 41 H 0.16 2.75 8.01 -2.91 -0.02 2.73 16 42 H 0.10 1.21 8.11 -2.39 -0.02 1.19 16 43 H 0.05 0.79 7.99 -2.39 -0.02 0.77 16 44 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 47 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 48 H 0.07 1.38 6.48 -2.39 -0.02 1.36 16 49 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 50 H 0.19 3.07 6.41 -2.91 -0.02 3.05 16 51 H 0.37 20.13 7.80 -92.71 -0.72 19.40 16 52 H 0.25 15.36 8.31 -92.70 -0.77 14.59 16 Total: -1.00 -78.05 418.04 0.48 -77.57 By element: Atomic # 1 Polarization: 39.47 SS G_CDS: -0.42 Total: 39.05 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 7.27 Total: 6.58 kcal Atomic # 7 Polarization: -138.97 SS G_CDS: -8.33 Total: -147.30 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.06 Total: -26.24 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.03 Total: 50.34 kcal Total: -78.05 0.48 -77.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135698203.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.271 kcal (2) G-P(sol) polarization free energy of solvation -78.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds