Wall clock time and date at job start Wed Apr 1 2020 04:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21590 * 120.00225 * 0.02562 * 9 8 5 11 11 C 1.47547 * 119.99764 * 180.02562 * 9 8 5 12 12 C 1.40349 * 120.47394 * 180.02562 * 11 9 8 13 13 C 1.36858 * 118.49312 * 179.97438 * 12 11 9 14 14 C 1.39392 * 119.37625 * 359.97438 * 13 12 11 15 15 N 1.38455 * 119.53720 * 179.97438 * 14 13 12 16 16 C 1.48535 * 111.00354 * 62.60433 * 15 14 13 17 17 C 1.54931 * 103.22931 * 159.72010 * 16 15 14 18 18 C 1.54593 * 102.92523 * 322.58795 * 17 16 15 19 19 C 1.47907 * 111.00386 * 180.02562 * 15 14 13 20 20 N 1.32601 * 120.92398 * 0.02562 * 14 13 12 21 21 C 1.31671 * 121.63925 * 359.73160 * 20 14 13 22 22 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 23 23 C 1.36935 * 120.00239 * 275.00034 * 22 2 1 24 24 H 1.08004 * 120.00069 * 0.02562 * 23 22 2 25 25 C 1.38811 * 120.00368 * 180.02562 * 23 22 2 26 26 N 1.31624 * 119.99540 * 359.72375 * 25 23 22 27 27 Si 1.86800 * 120.00451 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46758 * 269.72270 * 27 25 23 29 29 H 1.48499 * 109.47026 * 29.72118 * 27 25 23 30 30 H 1.48496 * 109.47474 * 149.72153 * 27 25 23 31 31 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 32 32 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 34 34 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 35 35 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 36 36 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 37 37 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 38 38 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 39 39 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 40 40 H 1.08002 * 120.75572 * 359.94994 * 12 11 9 41 41 H 1.08000 * 120.30720 * 179.97438 * 13 12 11 42 42 H 1.09001 * 110.66644 * 278.15507 * 16 15 14 43 43 H 1.09002 * 110.66317 * 41.28437 * 16 15 14 44 44 H 1.08997 * 110.72785 * 204.22865 * 17 16 15 45 45 H 1.09003 * 110.87864 * 81.01593 * 17 16 15 46 46 H 1.08999 * 110.30807 * 263.04461 * 18 17 16 47 47 H 1.08998 * 110.31529 * 140.86895 * 18 17 16 48 48 H 1.09006 * 109.91088 * 333.50721 * 19 15 14 49 49 H 1.08994 * 109.91665 * 94.79677 * 19 15 14 50 50 H 1.08001 * 119.74435 * 180.26270 * 21 20 14 51 51 H 0.97004 * 119.99747 * 95.00774 * 22 2 1 52 52 H 0.97000 * 120.00481 * 0.27542 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9379 0.4321 -0.5726 11 6 5.5467 2.6265 -1.2661 12 6 6.8077 3.0788 -0.8477 13 6 7.1234 4.3974 -1.0343 14 6 6.1915 5.2458 -1.6300 15 7 6.5071 6.5805 -1.8200 16 6 7.6659 6.7282 -2.7374 17 6 7.5385 8.1891 -3.2372 18 6 6.0102 8.3738 -3.3796 19 6 5.3885 7.3035 -2.4630 20 7 5.0067 4.7928 -2.0164 21 6 4.6650 3.5309 -1.8596 22 7 2.0183 -0.6906 1.1962 23 6 2.1490 -0.0075 2.3758 24 1 1.8918 1.0403 2.4244 25 6 2.6122 -0.6617 3.5091 26 7 2.9205 -1.9400 3.4511 27 14 2.7899 0.2699 5.1184 28 1 4.1540 0.8503 5.2062 29 1 1.7835 1.3605 5.1727 30 1 2.5735 -0.6603 6.2554 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.7517 -1.7715 -1.2056 35 1 1.6054 -0.2617 -2.1369 36 1 5.1716 -1.3615 -2.5380 37 1 3.8002 -2.4818 -2.3594 38 1 3.6547 -1.0591 -3.4193 39 1 3.3284 1.4130 -1.9027 40 1 7.5129 2.4019 -0.3885 41 1 8.0854 4.7769 -0.7230 42 1 8.6031 6.5861 -2.1993 43 1 7.5891 6.0287 -3.5698 44 1 8.0332 8.3118 -4.2007 45 1 7.9447 8.8870 -2.5051 46 1 5.7042 8.2112 -4.4131 47 1 5.7171 9.3704 -3.0497 48 1 4.7898 6.6106 -3.0544 49 1 4.7684 7.7793 -1.7034 50 1 3.6934 3.1939 -2.1894 51 1 2.2490 -1.6318 1.1526 52 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135698206.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:23 Heat of formation + Delta-G solvation = 20.670856 kcal Electronic energy + Delta-G solvation = -30735.753196 eV Core-core repulsion = 26735.521433 eV Total energy + Delta-G solvation = -4000.231762 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.15052 -39.67077 -38.27528 -36.86688 -34.65260 -33.29308 -32.75799 -32.28036 -30.98346 -29.34437 -29.03474 -28.27889 -26.38721 -24.45807 -23.89895 -23.38728 -22.12131 -21.31040 -20.86685 -20.39530 -19.88875 -18.22599 -17.59570 -17.22935 -16.91731 -16.17814 -15.52761 -15.10367 -15.06938 -14.92933 -14.47640 -14.29072 -14.13420 -13.98079 -13.54318 -13.38121 -13.28312 -13.21497 -13.05809 -12.83162 -12.53815 -12.42450 -12.15374 -12.07631 -11.77094 -11.69441 -11.68721 -11.58815 -11.03666 -10.98119 -10.69657 -10.48232 -10.42794 -10.26732 -10.08797 -10.08173 -9.94434 -9.91998 -9.45788 -9.09559 -8.84664 -8.80071 -8.40743 -6.95008 -6.01216 -3.00491 0.53864 1.10787 2.88572 3.30366 3.32996 3.56674 3.62403 3.74964 3.79691 3.99030 4.19715 4.39954 4.53657 4.70873 4.74003 4.75626 4.88938 4.90148 4.92954 5.03860 5.08586 5.26905 5.33568 5.38689 5.39684 5.40791 5.42926 5.56529 5.60770 5.65319 5.68338 5.69639 5.81909 5.84090 5.87657 5.92896 5.98757 6.05843 6.17550 6.22092 6.25070 6.29787 6.37764 6.48286 6.61336 6.74617 6.81774 6.86617 7.02128 7.63778 7.71413 7.88633 8.45412 8.84285 9.31208 10.17319 10.31799 11.47336 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011005 B = 0.002719 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.712045 B =10296.040885 C =11193.750644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.177 3.823 3 H 0.047 0.953 4 C -0.133 4.133 5 C 0.145 3.855 6 H 0.103 0.897 7 C -0.161 4.161 8 N -0.711 5.711 9 C 0.565 3.435 10 O -0.529 6.529 11 C -0.202 4.202 12 C 0.002 3.998 13 C -0.185 4.185 14 C 0.320 3.680 15 N -0.463 5.463 16 C 0.044 3.956 17 C -0.124 4.124 18 C -0.133 4.133 19 C 0.034 3.966 20 N -0.522 5.522 21 C 0.160 3.840 22 N -0.731 5.731 23 C -0.324 4.324 24 H 0.061 0.939 25 C -0.044 4.044 26 N -0.944 5.944 27 Si 1.078 2.922 28 H -0.296 1.296 29 H -0.296 1.296 30 H -0.288 1.288 31 H 0.035 0.965 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.392 0.608 40 H 0.150 0.850 41 H 0.141 0.859 42 H 0.092 0.908 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.083 0.917 50 H 0.159 0.841 51 H 0.365 0.635 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.740 17.060 -19.482 26.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 H 0.065 0.935 4 C -0.172 4.172 5 C 0.041 3.959 6 H 0.121 0.879 7 C -0.219 4.219 8 N -0.362 5.362 9 C 0.351 3.649 10 O -0.406 6.406 11 C -0.209 4.209 12 C -0.024 4.024 13 C -0.208 4.208 14 C 0.087 3.913 15 N -0.181 5.181 16 C -0.082 4.082 17 C -0.162 4.162 18 C -0.172 4.172 19 C -0.093 4.093 20 N -0.236 5.236 21 C 0.001 3.999 22 N -0.374 5.374 23 C -0.455 4.455 24 H 0.079 0.921 25 C -0.242 4.242 26 N -0.590 5.590 27 Si 0.910 3.090 28 H -0.224 1.224 29 H -0.223 1.223 30 H -0.214 1.214 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.227 0.773 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.093 0.907 48 H 0.103 0.897 49 H 0.101 0.899 50 H 0.176 0.824 51 H 0.199 0.801 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.231 17.423 -17.348 25.628 hybrid contribution -0.521 -0.642 -1.907 2.079 sum 6.710 16.781 -19.255 26.408 Atomic orbital electron populations 1.22441 0.99443 1.00726 0.99905 1.20157 0.91568 0.95525 0.86072 0.93537 1.22203 0.93742 1.02217 0.99006 1.21026 0.95060 0.79949 0.99830 0.87885 1.22187 1.01616 1.00139 0.97995 1.45857 1.16155 1.11739 1.62473 1.17835 0.82205 0.86705 0.78123 1.90807 1.51176 1.55820 1.42781 1.20961 0.97235 0.95594 1.07079 1.21355 0.94723 0.95050 0.91281 1.21262 1.01646 0.93576 1.04278 1.20076 0.89823 0.89454 0.91904 1.61748 1.07289 1.06303 1.42714 1.23337 0.93275 0.97502 0.94055 1.22515 0.96433 0.95565 1.01686 1.22466 0.95233 0.99605 0.99852 1.22932 0.92986 0.95724 0.97676 1.67561 1.18770 1.16334 1.20913 1.22731 0.97994 0.87394 0.91769 1.42399 1.79128 1.09653 1.06249 1.19973 1.41591 0.94870 0.89111 0.92114 1.25662 0.99529 0.97510 1.01496 1.70841 1.51585 1.08196 1.28369 0.83255 0.75821 0.74171 0.75765 1.22386 1.22295 1.21448 0.94583 0.93657 0.92832 0.90654 0.91848 0.92420 0.91697 0.93015 0.77327 0.83269 0.84077 0.89006 0.92544 0.90433 0.90273 0.91156 0.90663 0.89743 0.89879 0.82408 0.80123 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.49 37.16 0.35 -2.58 16 2 C 0.18 3.39 2.84 -67.93 -0.19 3.19 16 3 H 0.05 0.93 7.56 -51.93 -0.39 0.53 16 4 C -0.13 -2.01 4.29 -26.73 -0.11 -2.12 16 5 C 0.15 2.33 2.52 -67.93 -0.17 2.16 16 6 H 0.10 2.18 7.05 -51.93 -0.37 1.81 16 7 C -0.16 -2.17 9.48 37.16 0.35 -1.82 16 8 N -0.71 -10.48 4.40 -54.84 -0.24 -10.72 16 9 C 0.57 9.58 7.73 -12.47 -0.10 9.48 16 10 O -0.53 -11.16 16.07 5.29 0.08 -11.07 16 11 C -0.20 -2.87 5.89 -104.82 -0.62 -3.49 16 12 C 0.00 0.03 9.65 -39.29 -0.38 -0.35 16 13 C -0.19 -2.11 9.38 -39.65 -0.37 -2.49 16 14 C 0.32 3.79 6.20 -155.28 -0.96 2.83 16 15 N -0.46 -4.65 5.28 -169.25 -0.89 -5.55 16 16 C 0.04 0.32 6.03 -1.90 -0.01 0.31 16 17 C -0.12 -0.70 7.06 -24.87 -0.18 -0.88 16 18 C -0.13 -0.84 6.93 -25.36 -0.18 -1.02 16 19 C 0.03 0.30 6.34 -2.74 -0.02 0.29 16 20 N -0.52 -6.53 8.10 -12.14 -0.10 -6.63 16 21 C 0.16 1.97 10.71 -17.13 -0.18 1.78 16 22 N -0.73 -18.06 4.49 -53.43 -0.24 -18.30 16 23 C -0.32 -9.23 9.93 -15.06 -0.15 -9.38 16 24 H 0.06 1.74 7.83 -52.48 -0.41 1.32 16 25 C -0.04 -1.32 5.50 -17.43 -0.10 -1.42 16 26 N -0.94 -29.90 13.70 55.49 0.76 -29.14 16 27 Si 1.08 27.16 29.92 -169.99 -5.09 22.07 16 28 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 29 H -0.30 -7.03 7.11 56.52 0.40 -6.63 16 30 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.39 4.57 6.65 -40.82 -0.27 4.30 16 40 H 0.15 1.95 7.73 -52.49 -0.41 1.55 16 41 H 0.14 1.28 8.01 -52.49 -0.42 0.86 16 42 H 0.09 0.57 8.11 -51.93 -0.42 0.15 16 43 H 0.06 0.43 7.99 -51.93 -0.42 0.01 16 44 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.85 6.48 -51.93 -0.34 0.51 16 49 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.16 1.53 6.41 -52.49 -0.34 1.19 16 51 H 0.37 9.41 6.63 -40.82 -0.27 9.14 16 52 H 0.25 7.92 6.77 -40.82 -0.28 7.64 16 LS Contribution 416.34 15.07 6.27 6.27 Total: -1.00 -35.55 416.34 -11.07 -46.62 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -8.62 Total: 11.94 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -3.01 Total: -5.49 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: -0.71 Total: -70.33 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.07 kcal Atomic # 14 Polarization: 27.16 SS G_CDS: -5.09 Total: 22.07 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.55 -11.07 -46.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135698206.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.287 kcal (2) G-P(sol) polarization free energy of solvation -35.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds