Wall clock time and date at job start Wed Apr 1 2020 04:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21590 * 120.00225 * 0.02562 * 9 8 5 11 11 C 1.47547 * 119.99764 * 180.02562 * 9 8 5 12 12 C 1.40349 * 120.47394 * 180.02562 * 11 9 8 13 13 C 1.36858 * 118.49312 * 179.97438 * 12 11 9 14 14 C 1.39392 * 119.37625 * 359.97438 * 13 12 11 15 15 N 1.38455 * 119.53720 * 179.97438 * 14 13 12 16 16 C 1.48535 * 111.00354 * 62.60433 * 15 14 13 17 17 C 1.54931 * 103.22931 * 159.72010 * 16 15 14 18 18 C 1.54593 * 102.92523 * 322.58795 * 17 16 15 19 19 C 1.47907 * 111.00386 * 180.02562 * 15 14 13 20 20 N 1.32601 * 120.92398 * 0.02562 * 14 13 12 21 21 C 1.31671 * 121.63925 * 359.73160 * 20 14 13 22 22 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 23 23 C 1.36935 * 120.00239 * 275.00034 * 22 2 1 24 24 H 1.08004 * 120.00069 * 0.02562 * 23 22 2 25 25 C 1.38811 * 120.00368 * 180.02562 * 23 22 2 26 26 N 1.31624 * 119.99540 * 359.72375 * 25 23 22 27 27 Si 1.86800 * 120.00451 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46758 * 269.72270 * 27 25 23 29 29 H 1.48499 * 109.47026 * 29.72118 * 27 25 23 30 30 H 1.48496 * 109.47474 * 149.72153 * 27 25 23 31 31 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 32 32 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 34 34 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 35 35 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 36 36 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 37 37 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 38 38 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 39 39 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 40 40 H 1.08002 * 120.75572 * 359.94994 * 12 11 9 41 41 H 1.08000 * 120.30720 * 179.97438 * 13 12 11 42 42 H 1.09001 * 110.66644 * 278.15507 * 16 15 14 43 43 H 1.09002 * 110.66317 * 41.28437 * 16 15 14 44 44 H 1.08997 * 110.72785 * 204.22865 * 17 16 15 45 45 H 1.09003 * 110.87864 * 81.01593 * 17 16 15 46 46 H 1.08999 * 110.30807 * 263.04461 * 18 17 16 47 47 H 1.08998 * 110.31529 * 140.86895 * 18 17 16 48 48 H 1.09006 * 109.91088 * 333.50721 * 19 15 14 49 49 H 1.08994 * 109.91665 * 94.79677 * 19 15 14 50 50 H 1.08001 * 119.74435 * 180.26270 * 21 20 14 51 51 H 0.97004 * 119.99747 * 95.00774 * 22 2 1 52 52 H 0.97000 * 120.00481 * 0.27542 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9379 0.4321 -0.5726 11 6 5.5467 2.6265 -1.2661 12 6 6.8077 3.0788 -0.8477 13 6 7.1234 4.3974 -1.0343 14 6 6.1915 5.2458 -1.6300 15 7 6.5071 6.5805 -1.8200 16 6 7.6659 6.7282 -2.7374 17 6 7.5385 8.1891 -3.2372 18 6 6.0102 8.3738 -3.3796 19 6 5.3885 7.3035 -2.4630 20 7 5.0067 4.7928 -2.0164 21 6 4.6650 3.5309 -1.8596 22 7 2.0183 -0.6906 1.1962 23 6 2.1490 -0.0075 2.3758 24 1 1.8918 1.0403 2.4244 25 6 2.6122 -0.6617 3.5091 26 7 2.9205 -1.9400 3.4511 27 14 2.7899 0.2699 5.1184 28 1 4.1540 0.8503 5.2062 29 1 1.7835 1.3605 5.1727 30 1 2.5735 -0.6603 6.2554 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.7517 -1.7715 -1.2056 35 1 1.6054 -0.2617 -2.1369 36 1 5.1716 -1.3615 -2.5380 37 1 3.8002 -2.4818 -2.3594 38 1 3.6547 -1.0591 -3.4193 39 1 3.3284 1.4130 -1.9027 40 1 7.5129 2.4019 -0.3885 41 1 8.0854 4.7769 -0.7230 42 1 8.6031 6.5861 -2.1993 43 1 7.5891 6.0287 -3.5698 44 1 8.0332 8.3118 -4.2007 45 1 7.9447 8.8870 -2.5051 46 1 5.7042 8.2112 -4.4131 47 1 5.7171 9.3704 -3.0497 48 1 4.7898 6.6106 -3.0544 49 1 4.7684 7.7793 -1.7034 50 1 3.6934 3.1939 -2.1894 51 1 2.2490 -1.6318 1.1526 52 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135698206.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:21 Heat of formation + Delta-G solvation = -2.975048 kcal Electronic energy + Delta-G solvation = -30736.778559 eV Core-core repulsion = 26735.521433 eV Total energy + Delta-G solvation = -4001.257126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.08955 -40.83472 -39.16766 -38.36778 -36.31161 -34.36827 -33.99325 -33.62541 -32.22051 -30.25860 -29.98286 -29.86458 -27.67815 -25.62232 -25.34691 -24.81218 -23.08734 -22.28462 -21.67507 -21.56036 -21.35083 -19.53637 -19.17883 -18.44905 -17.88194 -17.07733 -16.75529 -16.55124 -16.24728 -16.03936 -15.90186 -15.51901 -15.41284 -15.33506 -14.74348 -14.66547 -14.46126 -14.34857 -14.07234 -13.75989 -13.58061 -13.43772 -13.28518 -13.15267 -13.12151 -12.93532 -12.80858 -12.53550 -12.27639 -12.20364 -12.13102 -11.91948 -11.87917 -11.58760 -11.47334 -11.34504 -11.19004 -11.10424 -10.94373 -10.91595 -10.53597 -10.10818 -9.28848 -9.05628 -8.35478 -5.26683 -0.47633 0.13990 1.51567 1.62791 1.74459 1.75839 2.13182 2.46151 2.69593 2.74429 3.19368 3.43221 3.59221 3.64200 3.71399 3.73435 3.81836 3.86841 3.97066 3.98559 4.05148 4.15525 4.29698 4.31096 4.45980 4.50831 4.52235 4.60577 4.63334 4.71194 4.75932 4.77238 4.84316 4.88756 4.92715 4.96159 4.98052 5.01254 5.03844 5.13714 5.17319 5.24544 5.26379 5.29247 5.33913 5.53164 5.53908 5.55807 5.63721 5.97108 6.50741 6.53404 6.69991 7.15284 7.21367 8.06266 8.16390 9.16969 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011005 B = 0.002719 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.712045 B =10296.040885 C =11193.750644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 H 0.040 0.960 4 C -0.119 4.119 5 C 0.147 3.853 6 H 0.044 0.956 7 C -0.151 4.151 8 N -0.699 5.699 9 C 0.561 3.439 10 O -0.584 6.584 11 C -0.225 4.225 12 C -0.008 4.008 13 C -0.182 4.182 14 C 0.320 3.680 15 N -0.471 5.471 16 C 0.040 3.960 17 C -0.118 4.118 18 C -0.129 4.129 19 C 0.030 3.970 20 N -0.531 5.531 21 C 0.169 3.831 22 N -0.743 5.743 23 C -0.313 4.313 24 H 0.058 0.942 25 C -0.109 4.109 26 N -0.978 5.978 27 Si 1.120 2.880 28 H -0.294 1.294 29 H -0.272 1.272 30 H -0.291 1.291 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.026 0.974 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.410 0.590 40 H 0.141 0.859 41 H 0.164 0.836 42 H 0.104 0.896 43 H 0.054 0.946 44 H 0.096 0.904 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.074 0.926 49 H 0.074 0.926 50 H 0.184 0.816 51 H 0.357 0.643 52 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.963 19.752 -21.903 30.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.060 3.940 3 H 0.058 0.942 4 C -0.158 4.158 5 C 0.043 3.957 6 H 0.062 0.938 7 C -0.209 4.209 8 N -0.350 5.350 9 C 0.348 3.652 10 O -0.465 6.465 11 C -0.232 4.232 12 C -0.035 4.035 13 C -0.204 4.204 14 C 0.088 3.912 15 N -0.189 5.189 16 C -0.085 4.085 17 C -0.156 4.156 18 C -0.167 4.167 19 C -0.097 4.097 20 N -0.245 5.245 21 C 0.010 3.990 22 N -0.385 5.385 23 C -0.445 4.445 24 H 0.076 0.924 25 C -0.301 4.301 26 N -0.627 5.627 27 Si 0.947 3.053 28 H -0.222 1.222 29 H -0.197 1.197 30 H -0.217 1.217 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.097 0.903 35 H 0.129 0.871 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.247 0.753 40 H 0.159 0.841 41 H 0.182 0.818 42 H 0.122 0.878 43 H 0.073 0.927 44 H 0.115 0.885 45 H 0.102 0.898 46 H 0.097 0.903 47 H 0.103 0.897 48 H 0.092 0.908 49 H 0.093 0.907 50 H 0.200 0.800 51 H 0.188 0.812 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.400 20.183 -19.845 29.019 hybrid contribution -0.286 -1.340 -1.249 1.854 sum 6.114 18.843 -21.094 28.938 Atomic orbital electron populations 1.22292 0.97620 1.00874 1.00751 1.20469 0.92658 0.95127 0.85762 0.94200 1.22114 0.92685 1.02389 0.98567 1.20858 0.95626 0.80792 0.98439 0.93758 1.22085 1.00472 1.00256 0.98091 1.45738 1.15848 1.11699 1.61730 1.18306 0.82166 0.87514 0.77175 1.90773 1.52832 1.57451 1.45461 1.20824 0.98415 0.94355 1.09572 1.21417 0.94564 0.95889 0.91606 1.21427 1.02584 0.92632 1.03795 1.20408 0.89587 0.90273 0.90952 1.61773 1.08514 1.05055 1.43508 1.23493 0.92591 0.98724 0.93654 1.22537 0.96028 0.94252 1.02757 1.22459 0.95520 0.99039 0.99647 1.22974 0.92809 0.96150 0.97732 1.67680 1.19249 1.16149 1.21421 1.23035 0.98378 0.86998 0.90554 1.42607 1.79451 1.09373 1.07101 1.20247 1.39079 0.94760 0.90406 0.92395 1.26955 1.00352 0.97737 1.05010 1.70945 1.54478 1.09375 1.27946 0.82704 0.76368 0.73760 0.72488 1.22163 1.19737 1.21729 0.90201 0.93858 0.95465 0.90316 0.87126 0.94299 0.90993 0.89687 0.75255 0.84117 0.81819 0.87819 0.92726 0.88529 0.89818 0.90275 0.89699 0.90822 0.90729 0.79950 0.81161 0.94610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.17 9.49 71.98 0.68 -4.49 16 2 C 0.17 6.24 2.84 44.99 0.13 6.36 16 3 H 0.04 1.54 7.56 -2.38 -0.02 1.52 16 4 C -0.12 -3.34 4.29 30.60 0.13 -3.21 16 5 C 0.15 4.71 2.52 45.00 0.11 4.82 16 6 H 0.04 1.98 7.05 -2.39 -0.02 1.96 16 7 C -0.15 -3.91 9.48 71.98 0.68 -3.23 16 8 N -0.70 -20.25 4.40 -445.68 -1.96 -22.21 16 9 C 0.56 19.61 7.73 86.70 0.67 20.28 16 10 O -0.58 -26.30 16.07 -4.00 -0.06 -26.36 16 11 C -0.23 -6.46 5.89 -19.99 -0.12 -6.58 16 12 C -0.01 -0.23 9.65 22.46 0.22 -0.01 16 13 C -0.18 -4.03 9.38 22.22 0.21 -3.82 16 14 C 0.32 7.21 6.20 133.25 0.83 8.04 16 15 N -0.47 -8.66 5.28 -689.39 -3.64 -12.29 16 16 C 0.04 0.49 6.03 86.65 0.52 1.01 16 17 C -0.12 -0.98 7.06 31.80 0.22 -0.76 16 18 C -0.13 -1.29 6.93 31.48 0.22 -1.07 16 19 C 0.03 0.49 6.34 86.46 0.55 1.04 16 20 N -0.53 -12.60 8.10 -192.33 -1.56 -14.16 16 21 C 0.17 3.97 10.71 85.04 0.91 4.88 16 22 N -0.74 -37.43 4.49 -322.94 -1.45 -38.88 16 23 C -0.31 -18.15 9.93 84.03 0.83 -17.31 16 24 H 0.06 3.34 7.83 -2.91 -0.02 3.31 16 25 C -0.11 -6.68 5.50 84.86 0.47 -6.21 16 26 N -0.98 -64.15 13.70 21.65 0.30 -63.86 16 27 Si 1.12 55.69 29.92 68.60 2.05 57.74 16 28 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 29 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 30 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.41 8.68 6.65 -92.71 -0.62 8.06 16 40 H 0.14 3.95 7.73 -2.91 -0.02 3.93 16 41 H 0.16 2.74 8.01 -2.91 -0.02 2.72 16 42 H 0.10 1.02 8.11 -2.39 -0.02 1.01 16 43 H 0.05 0.71 7.99 -2.39 -0.02 0.69 16 44 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.08 0.67 8.14 -2.39 -0.02 0.66 16 47 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.07 1.38 6.48 -2.38 -0.02 1.36 16 49 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.18 3.12 6.41 -2.91 -0.02 3.10 16 51 H 0.36 19.09 6.63 -92.71 -0.61 18.48 16 52 H 0.24 15.87 6.77 -92.71 -0.63 15.24 16 Total: -1.00 -81.78 416.34 0.78 -81.00 By element: Atomic # 1 Polarization: 39.43 SS G_CDS: -0.17 Total: 39.27 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 7.27 Total: -0.24 kcal Atomic # 7 Polarization: -143.09 SS G_CDS: -8.31 Total: -151.40 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.06 Total: -26.36 kcal Atomic # 14 Polarization: 55.69 SS G_CDS: 2.05 Total: 57.74 kcal Total: -81.78 0.78 -81.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135698206.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.024 kcal (2) G-P(sol) polarization free energy of solvation -81.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds