Wall clock time and date at job start Wed Apr 1 2020 04:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47357 * 2 1 4 4 C 1.53003 * 109.47345 * 239.99582 * 2 1 3 5 5 C 1.53002 * 109.47243 * 174.79496 * 4 2 1 6 6 H 1.09002 * 109.47118 * 54.05145 * 5 4 2 7 7 C 1.53003 * 109.46592 * 294.05849 * 5 4 2 8 8 N 1.46493 * 109.47021 * 174.05932 * 5 4 2 9 9 C 1.34779 * 119.99694 * 201.44476 * 8 5 4 10 10 O 1.21470 * 120.00282 * 4.86819 * 9 8 5 11 11 C 1.48455 * 119.99798 * 184.86340 * 9 8 5 12 12 C 1.39539 * 120.55112 * 185.11927 * 11 9 8 13 13 C 1.38757 * 118.26537 * 179.73217 * 12 11 9 14 14 N 1.32204 * 119.14921 * 0.25409 * 13 12 11 15 15 C 1.31884 * 121.03674 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.04403 * 180.02562 * 15 14 13 17 17 C 1.54274 * 110.03228 * 53.14984 * 16 15 14 18 18 C 1.54965 * 104.16056 * 217.13634 * 17 16 15 19 19 C 1.54891 * 102.77336 * 37.88565 * 18 17 16 20 20 C 1.53873 * 110.03237 * 295.93290 * 16 15 14 21 21 N 1.31587 * 121.91457 * 0.02562 * 15 14 13 22 22 N 1.46507 * 109.47024 * 119.99577 * 2 1 3 23 23 C 1.36942 * 119.99715 * 278.60822 * 22 2 1 24 24 H 1.07993 * 120.00000 * 4.96532 * 23 22 2 25 25 C 1.38806 * 119.99508 * 184.96895 * 23 22 2 26 26 N 1.31617 * 119.99873 * 184.72341 * 25 23 22 27 27 Si 1.86800 * 120.00563 * 4.71848 * 25 23 22 28 28 H 1.48504 * 109.47076 * 94.30319 * 27 25 23 29 29 H 1.48500 * 109.47550 * 214.30837 * 27 25 23 30 30 H 1.48504 * 109.46853 * 334.30907 * 27 25 23 31 31 H 1.09005 * 109.47409 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47495 * 300.00761 * 1 2 3 33 33 H 1.09002 * 109.47071 * 60.00718 * 1 2 3 34 34 H 1.08999 * 109.47089 * 54.79150 * 4 2 1 35 35 H 1.09004 * 109.46937 * 294.79117 * 4 2 1 36 36 H 1.08995 * 109.47175 * 60.00156 * 7 5 4 37 37 H 1.09004 * 109.46788 * 180.02562 * 7 5 4 38 38 H 1.09002 * 109.46943 * 300.00022 * 7 5 4 39 39 H 0.97002 * 120.00437 * 21.44760 * 8 5 4 40 40 H 1.07996 * 120.86369 * 0.02562 * 12 11 9 41 41 H 1.08000 * 120.42765 * 180.22748 * 13 12 11 42 42 H 1.08997 * 110.01571 * 174.53797 * 16 15 14 43 43 H 1.09004 * 110.48124 * 335.78385 * 17 16 15 44 44 H 1.08995 * 110.48192 * 98.42341 * 17 16 15 45 45 H 1.08996 * 110.71650 * 279.57582 * 18 17 16 46 46 H 1.08997 * 110.76036 * 156.21954 * 18 17 16 47 47 H 1.09004 * 110.48676 * 203.40057 * 19 18 17 48 48 H 1.09003 * 110.60026 * 80.82469 * 19 18 17 49 49 H 1.09007 * 110.03007 * 238.56742 * 20 16 15 50 50 H 1.08998 * 110.03044 * 359.94822 * 20 16 15 51 51 H 0.97000 * 119.99775 * 98.60679 * 22 2 1 52 52 H 0.97005 * 120.00684 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5644 -0.6090 -1.3163 6 1 3.9968 -0.9699 -0.3831 7 6 3.9590 0.8539 -1.5290 8 7 4.0649 -1.4169 -2.4311 9 6 5.3483 -1.8285 -2.4421 10 8 6.0658 -1.6057 -1.4876 11 6 5.8850 -2.5542 -3.6208 12 6 7.1780 -3.0784 -3.6026 13 6 7.6295 -3.7529 -4.7281 14 7 6.8280 -3.8708 -5.7728 15 6 5.6125 -3.3592 -5.7586 16 6 4.7365 -3.5205 -6.9741 17 6 4.6514 -5.0091 -7.3703 18 6 4.6384 -4.9888 -8.9198 19 6 5.6270 -3.8447 -9.2557 20 6 5.3562 -2.7803 -8.1724 21 7 5.1425 -2.7118 -4.7139 22 7 2.0183 -0.6906 1.1963 23 6 2.0791 -0.0273 2.3928 24 1 1.6929 0.9780 2.4731 25 6 2.6372 -0.6472 3.5023 26 7 2.6122 -0.0472 4.6734 27 14 3.4237 -2.3331 3.3333 28 1 4.8835 -2.1781 3.1091 29 1 3.1938 -3.1135 4.5757 30 1 2.8192 -3.0481 2.1807 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8898 33 1 -0.3633 0.5137 -0.8901 34 1 1.6025 -0.2643 -2.1368 35 1 1.7548 -1.7724 -1.2037 36 1 3.5865 1.4550 -0.6996 37 1 5.0450 0.9339 -1.5773 38 1 3.5265 1.2148 -2.4622 39 1 3.4728 -1.6556 -3.1614 40 1 7.8092 -2.9662 -2.7335 41 1 8.6230 -4.1758 -4.7505 42 1 3.7393 -3.1310 -6.7697 43 1 5.5226 -5.5519 -7.0034 44 1 3.7337 -5.4542 -6.9861 45 1 3.6407 -4.7595 -9.2940 46 1 4.9944 -5.9374 -9.3216 47 1 5.4208 -3.4411 -10.2470 48 1 6.6566 -4.1974 -9.1951 49 1 4.6592 -2.0321 -8.5501 50 1 6.2900 -2.3037 -7.8745 51 1 2.2984 -1.6175 1.1407 52 1 3.0019 -0.4805 5.4489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135821507.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:31 Heat of formation + Delta-G solvation = 7.006084 kcal Electronic energy + Delta-G solvation = -30341.898899 eV Core-core repulsion = 26341.074588 eV Total energy + Delta-G solvation = -4000.824311 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.68686 -39.71170 -38.21720 -37.14932 -34.84740 -34.19215 -32.82310 -32.24946 -30.56937 -29.10233 -29.09250 -28.97520 -26.48777 -25.91485 -24.13835 -23.43636 -22.22447 -21.05585 -20.79647 -20.16564 -19.63656 -18.36908 -17.98960 -17.48101 -16.29387 -15.96457 -15.79356 -15.67480 -15.54481 -15.10914 -14.82375 -14.53507 -14.05541 -13.93447 -13.83579 -13.75800 -13.61680 -13.02409 -12.69271 -12.36728 -12.15970 -12.13721 -11.95686 -11.87022 -11.53757 -11.51276 -11.45349 -11.20718 -11.18821 -11.13030 -11.03537 -10.91354 -10.88757 -10.63345 -10.56008 -10.50818 -10.25406 -9.90223 -9.84062 -9.57381 -9.55636 -9.03550 -8.87777 -7.21744 -5.73737 -3.08787 0.20380 0.55437 2.59517 2.86761 3.35950 3.40716 3.46417 3.47564 3.51695 3.64798 4.24507 4.27472 4.29527 4.40046 4.58870 4.63355 4.71460 5.00734 5.01606 5.05540 5.11793 5.17150 5.19168 5.21324 5.30049 5.36904 5.43789 5.49666 5.53460 5.53860 5.58115 5.67653 5.71931 5.79556 5.87686 5.90371 5.92614 5.96958 6.01307 6.08800 6.18355 6.29630 6.33761 6.42969 6.46444 6.53167 6.64693 6.83785 7.01120 7.41665 7.65634 8.03813 8.08080 8.45670 9.24982 9.97649 10.17348 11.44546 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015577 B = 0.002352 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.079018 B =11900.229832 C =12689.362247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.178 3.822 3 H 0.059 0.941 4 C -0.132 4.132 5 C 0.138 3.862 6 H 0.101 0.899 7 C -0.159 4.159 8 N -0.700 5.700 9 C 0.564 3.436 10 O -0.517 6.517 11 C 0.139 3.861 12 C -0.178 4.178 13 C 0.151 3.849 14 N -0.500 5.500 15 C 0.324 3.676 16 C -0.026 4.026 17 C -0.114 4.114 18 C -0.122 4.122 19 C -0.120 4.120 20 C -0.109 4.109 21 N -0.494 5.494 22 N -0.749 5.749 23 C -0.240 4.240 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.933 5.933 27 Si 0.883 3.117 28 H -0.283 1.283 29 H -0.293 1.293 30 H -0.280 1.280 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.038 0.962 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.407 0.593 40 H 0.161 0.839 41 H 0.177 0.823 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.064 0.936 51 H 0.362 0.638 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.040 -8.278 -30.091 31.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.069 3.931 3 H 0.077 0.923 4 C -0.170 4.170 5 C 0.035 3.965 6 H 0.119 0.881 7 C -0.217 4.217 8 N -0.351 5.351 9 C 0.346 3.654 10 O -0.391 6.391 11 C -0.009 4.009 12 C -0.200 4.200 13 C -0.016 4.016 14 N -0.214 5.214 15 C 0.056 3.944 16 C -0.046 4.046 17 C -0.152 4.152 18 C -0.160 4.160 19 C -0.158 4.158 20 C -0.147 4.147 21 N -0.210 5.210 22 N -0.394 5.394 23 C -0.370 4.370 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.581 5.581 27 Si 0.714 3.286 28 H -0.210 1.210 29 H -0.219 1.219 30 H -0.206 1.206 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.242 0.758 40 H 0.179 0.821 41 H 0.194 0.806 42 H 0.119 0.881 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.083 0.917 51 H 0.195 0.805 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.958 -7.968 -29.934 31.544 hybrid contribution 0.885 -1.253 0.597 1.646 sum 6.843 -9.221 -29.337 31.504 Atomic orbital electron populations 1.22382 0.98630 1.00888 1.00458 1.20212 0.92139 0.95863 0.84922 0.92290 1.22153 0.93242 1.01819 0.99820 1.21188 0.94656 0.90873 0.89759 0.88087 1.22167 1.01620 0.95755 1.02181 1.46053 1.10692 1.52777 1.25556 1.17810 0.83029 0.79328 0.85195 1.90853 1.58202 1.55947 1.34080 1.21802 0.91684 0.94559 0.92856 1.23019 0.96987 0.98273 1.01768 1.23362 0.99259 0.91708 0.87272 1.68091 1.05002 1.19301 1.28978 1.23098 0.89394 0.88707 0.93156 1.20695 0.97211 0.97755 0.88934 1.22458 1.02635 0.93956 0.96164 1.22484 0.99582 0.98806 0.95078 1.22328 0.99918 0.95572 0.97978 1.22120 1.00801 0.97917 0.93900 1.68203 1.37292 1.15409 1.00134 1.42930 1.78950 1.11655 1.05825 1.19020 1.32817 0.99636 0.85520 0.89244 1.24670 1.00989 0.97822 0.95510 1.69706 1.50601 1.38685 0.99096 0.86575 0.80171 0.85431 0.76424 1.20956 1.21916 1.20648 0.93630 0.92245 0.94253 0.91247 0.91609 0.90108 0.92701 0.92976 0.75796 0.82113 0.80594 0.88147 0.90349 0.91318 0.91323 0.91302 0.91628 0.91221 0.91083 0.91699 0.80488 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.44 37.15 0.35 -2.40 16 2 C 0.18 3.24 2.77 -67.93 -0.19 3.05 16 3 H 0.06 1.10 6.34 -51.93 -0.33 0.77 16 4 C -0.13 -1.92 4.36 -26.73 -0.12 -2.03 16 5 C 0.14 2.17 2.59 -67.93 -0.18 1.99 16 6 H 0.10 2.00 7.05 -51.93 -0.37 1.63 16 7 C -0.16 -2.36 9.21 37.16 0.34 -2.02 16 8 N -0.70 -9.62 5.10 -54.56 -0.28 -9.90 16 9 C 0.56 8.53 7.74 -12.05 -0.09 8.44 16 10 O -0.52 -9.61 16.13 5.39 0.09 -9.52 16 11 C 0.14 1.75 6.79 -82.63 -0.56 1.19 16 12 C -0.18 -1.87 9.72 -38.90 -0.38 -2.24 16 13 C 0.15 1.29 11.31 -17.20 -0.19 1.10 16 14 N -0.50 -4.90 9.39 -10.74 -0.10 -5.00 16 15 C 0.32 3.33 6.15 -157.30 -0.97 2.36 16 16 C -0.03 -0.20 3.29 -90.65 -0.30 -0.50 16 17 C -0.11 -0.79 6.32 -25.03 -0.16 -0.95 16 18 C -0.12 -0.67 6.91 -24.70 -0.17 -0.85 16 19 C -0.12 -0.70 6.83 -25.07 -0.17 -0.87 16 20 C -0.11 -0.75 6.39 -25.62 -0.16 -0.92 16 21 N -0.49 -5.72 9.60 -7.32 -0.07 -5.79 16 22 N -0.75 -17.30 4.31 -53.43 -0.23 -17.53 16 23 C -0.24 -6.68 10.38 -15.06 -0.16 -6.84 16 24 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 25 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 26 N -0.93 -29.50 13.97 55.49 0.78 -28.72 16 27 Si 0.88 22.84 28.00 -169.99 -4.76 18.08 16 28 H -0.28 -7.47 7.11 56.52 0.40 -7.07 16 29 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 30 H -0.28 -6.80 6.16 56.52 0.35 -6.45 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.28 6.49 -51.93 -0.34 0.94 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.41 4.69 7.99 -40.82 -0.33 4.37 16 40 H 0.16 1.57 7.75 -52.49 -0.41 1.17 16 41 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.10 0.75 8.11 -51.93 -0.42 0.33 16 43 H 0.08 0.63 7.27 -51.93 -0.38 0.26 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.06 0.53 7.62 -51.93 -0.40 0.14 16 51 H 0.36 8.45 5.46 -40.82 -0.22 8.23 16 52 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 416.94 15.07 6.28 6.28 Total: -1.00 -33.55 416.94 -10.20 -43.75 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -8.71 Total: 9.74 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -3.20 Total: -1.41 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: 0.10 Total: -66.94 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.76 Total: 18.08 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.55 -10.20 -43.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135821507.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.760 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds