Wall clock time and date at job start Wed Apr 1 2020 04:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47357 * 2 1 4 4 C 1.53003 * 109.47345 * 239.99582 * 2 1 3 5 5 C 1.53002 * 109.47243 * 174.79496 * 4 2 1 6 6 H 1.09002 * 109.47118 * 54.05145 * 5 4 2 7 7 C 1.53003 * 109.46592 * 294.05849 * 5 4 2 8 8 N 1.46493 * 109.47021 * 174.05932 * 5 4 2 9 9 C 1.34779 * 119.99694 * 201.44476 * 8 5 4 10 10 O 1.21470 * 120.00282 * 4.86819 * 9 8 5 11 11 C 1.48455 * 119.99798 * 184.86340 * 9 8 5 12 12 C 1.39539 * 120.55112 * 185.11927 * 11 9 8 13 13 C 1.38757 * 118.26537 * 179.73217 * 12 11 9 14 14 N 1.32204 * 119.14921 * 0.25409 * 13 12 11 15 15 C 1.31884 * 121.03674 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.04403 * 180.02562 * 15 14 13 17 17 C 1.54274 * 110.03228 * 53.14984 * 16 15 14 18 18 C 1.54965 * 104.16056 * 217.13634 * 17 16 15 19 19 C 1.54891 * 102.77336 * 37.88565 * 18 17 16 20 20 C 1.53873 * 110.03237 * 295.93290 * 16 15 14 21 21 N 1.31587 * 121.91457 * 0.02562 * 15 14 13 22 22 N 1.46507 * 109.47024 * 119.99577 * 2 1 3 23 23 C 1.36942 * 119.99715 * 278.60822 * 22 2 1 24 24 H 1.07993 * 120.00000 * 4.96532 * 23 22 2 25 25 C 1.38806 * 119.99508 * 184.96895 * 23 22 2 26 26 N 1.31617 * 119.99873 * 184.72341 * 25 23 22 27 27 Si 1.86800 * 120.00563 * 4.71848 * 25 23 22 28 28 H 1.48504 * 109.47076 * 94.30319 * 27 25 23 29 29 H 1.48500 * 109.47550 * 214.30837 * 27 25 23 30 30 H 1.48504 * 109.46853 * 334.30907 * 27 25 23 31 31 H 1.09005 * 109.47409 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47495 * 300.00761 * 1 2 3 33 33 H 1.09002 * 109.47071 * 60.00718 * 1 2 3 34 34 H 1.08999 * 109.47089 * 54.79150 * 4 2 1 35 35 H 1.09004 * 109.46937 * 294.79117 * 4 2 1 36 36 H 1.08995 * 109.47175 * 60.00156 * 7 5 4 37 37 H 1.09004 * 109.46788 * 180.02562 * 7 5 4 38 38 H 1.09002 * 109.46943 * 300.00022 * 7 5 4 39 39 H 0.97002 * 120.00437 * 21.44760 * 8 5 4 40 40 H 1.07996 * 120.86369 * 0.02562 * 12 11 9 41 41 H 1.08000 * 120.42765 * 180.22748 * 13 12 11 42 42 H 1.08997 * 110.01571 * 174.53797 * 16 15 14 43 43 H 1.09004 * 110.48124 * 335.78385 * 17 16 15 44 44 H 1.08995 * 110.48192 * 98.42341 * 17 16 15 45 45 H 1.08996 * 110.71650 * 279.57582 * 18 17 16 46 46 H 1.08997 * 110.76036 * 156.21954 * 18 17 16 47 47 H 1.09004 * 110.48676 * 203.40057 * 19 18 17 48 48 H 1.09003 * 110.60026 * 80.82469 * 19 18 17 49 49 H 1.09007 * 110.03007 * 238.56742 * 20 16 15 50 50 H 1.08998 * 110.03044 * 359.94822 * 20 16 15 51 51 H 0.97000 * 119.99775 * 98.60679 * 22 2 1 52 52 H 0.97005 * 120.00684 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5644 -0.6090 -1.3163 6 1 3.9968 -0.9699 -0.3831 7 6 3.9590 0.8539 -1.5290 8 7 4.0649 -1.4169 -2.4311 9 6 5.3483 -1.8285 -2.4421 10 8 6.0658 -1.6057 -1.4876 11 6 5.8850 -2.5542 -3.6208 12 6 7.1780 -3.0784 -3.6026 13 6 7.6295 -3.7529 -4.7281 14 7 6.8280 -3.8708 -5.7728 15 6 5.6125 -3.3592 -5.7586 16 6 4.7365 -3.5205 -6.9741 17 6 4.6514 -5.0091 -7.3703 18 6 4.6384 -4.9888 -8.9198 19 6 5.6270 -3.8447 -9.2557 20 6 5.3562 -2.7803 -8.1724 21 7 5.1425 -2.7118 -4.7139 22 7 2.0183 -0.6906 1.1963 23 6 2.0791 -0.0273 2.3928 24 1 1.6929 0.9780 2.4731 25 6 2.6372 -0.6472 3.5023 26 7 2.6122 -0.0472 4.6734 27 14 3.4237 -2.3331 3.3333 28 1 4.8835 -2.1781 3.1091 29 1 3.1938 -3.1135 4.5757 30 1 2.8192 -3.0481 2.1807 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8898 33 1 -0.3633 0.5137 -0.8901 34 1 1.6025 -0.2643 -2.1368 35 1 1.7548 -1.7724 -1.2037 36 1 3.5865 1.4550 -0.6996 37 1 5.0450 0.9339 -1.5773 38 1 3.5265 1.2148 -2.4622 39 1 3.4728 -1.6556 -3.1614 40 1 7.8092 -2.9662 -2.7335 41 1 8.6230 -4.1758 -4.7505 42 1 3.7393 -3.1310 -6.7697 43 1 5.5226 -5.5519 -7.0034 44 1 3.7337 -5.4542 -6.9861 45 1 3.6407 -4.7595 -9.2940 46 1 4.9944 -5.9374 -9.3216 47 1 5.4208 -3.4411 -10.2470 48 1 6.6566 -4.1974 -9.1951 49 1 4.6592 -2.0321 -8.5501 50 1 6.2900 -2.3037 -7.8745 51 1 2.2984 -1.6175 1.1407 52 1 3.0019 -0.4805 5.4489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135821507.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:30 Heat of formation + Delta-G solvation = -14.645037 kcal Electronic energy + Delta-G solvation = -30342.837762 eV Core-core repulsion = 26341.074588 eV Total energy + Delta-G solvation = -4001.763174 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.50305 -40.84953 -38.85924 -38.52098 -36.33236 -35.10137 -34.15364 -33.56409 -32.09284 -30.75818 -29.58857 -29.56970 -27.73693 -26.87330 -25.43366 -24.83552 -23.38246 -21.97168 -21.48238 -21.32187 -20.81038 -19.77615 -19.13075 -18.73594 -17.23620 -16.92867 -16.87132 -16.61322 -16.52244 -16.26741 -15.89689 -15.68797 -15.53962 -15.24516 -15.01083 -14.69972 -14.33246 -14.30292 -14.17558 -14.00035 -13.66097 -13.29177 -12.97825 -12.88736 -12.76721 -12.51597 -12.50862 -12.22921 -12.10035 -12.03424 -11.96299 -11.90775 -11.90148 -11.87986 -11.78376 -11.69263 -11.58623 -11.38785 -11.36489 -10.97059 -10.62206 -10.45990 -10.23389 -9.26514 -8.01875 -5.32075 -0.68696 -0.19015 1.30971 1.38983 1.41178 1.54599 1.78973 2.46190 2.57287 2.62984 2.91264 3.30522 3.43686 3.60752 3.61982 3.75362 3.76456 3.84078 3.87756 4.04127 4.07477 4.20138 4.40156 4.44216 4.52553 4.54901 4.57446 4.61425 4.64181 4.68710 4.76220 4.82189 4.86049 4.92404 4.94814 4.97353 5.06282 5.10656 5.11241 5.14037 5.21119 5.30089 5.31516 5.38407 5.40340 5.43562 5.54559 5.60418 5.68946 5.82163 6.23784 6.33382 6.84435 6.98161 7.10951 7.89298 8.05617 9.20008 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015577 B = 0.002352 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.079018 B =11900.229832 C =12689.362247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 H 0.053 0.947 4 C -0.117 4.117 5 C 0.142 3.858 6 H 0.057 0.943 7 C -0.153 4.153 8 N -0.687 5.687 9 C 0.561 3.439 10 O -0.561 6.561 11 C 0.119 3.881 12 C -0.182 4.182 13 C 0.163 3.837 14 N -0.503 5.503 15 C 0.317 3.683 16 C -0.027 4.027 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.106 4.106 21 N -0.501 5.501 22 N -0.752 5.752 23 C -0.213 4.213 24 H 0.062 0.938 25 C -0.063 4.063 26 N -0.983 5.983 27 Si 0.945 3.055 28 H -0.294 1.294 29 H -0.295 1.295 30 H -0.255 1.255 31 H 0.049 0.951 32 H 0.030 0.970 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.038 0.962 38 H 0.082 0.918 39 H 0.420 0.580 40 H 0.164 0.836 41 H 0.216 0.784 42 H 0.105 0.895 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.063 0.937 49 H 0.081 0.919 50 H 0.049 0.951 51 H 0.362 0.638 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.571 -9.831 -34.071 35.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.060 3.940 3 H 0.071 0.929 4 C -0.156 4.156 5 C 0.038 3.962 6 H 0.075 0.925 7 C -0.211 4.211 8 N -0.338 5.338 9 C 0.346 3.654 10 O -0.438 6.438 11 C -0.028 4.028 12 C -0.205 4.205 13 C -0.004 4.004 14 N -0.217 5.217 15 C 0.050 3.950 16 C -0.048 4.048 17 C -0.150 4.150 18 C -0.155 4.155 19 C -0.156 4.156 20 C -0.145 4.145 21 N -0.217 5.217 22 N -0.397 5.397 23 C -0.345 4.345 24 H 0.080 0.920 25 C -0.255 4.255 26 N -0.634 5.634 27 Si 0.775 3.225 28 H -0.221 1.221 29 H -0.222 1.222 30 H -0.180 1.180 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.129 0.871 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.258 0.742 40 H 0.181 0.819 41 H 0.233 0.767 42 H 0.123 0.877 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.081 0.919 49 H 0.099 0.901 50 H 0.068 0.932 51 H 0.195 0.805 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.431 -9.531 -34.008 35.734 hybrid contribution 1.027 -0.691 1.717 2.117 sum 6.459 -10.222 -32.291 34.481 Atomic orbital electron populations 1.22250 0.96903 1.01338 1.01015 1.20513 0.93212 0.95654 0.84583 0.92903 1.22033 0.92104 1.02122 0.99301 1.20969 0.95338 0.91280 0.88661 0.92505 1.22092 1.00714 0.95159 1.03102 1.45870 1.10607 1.52078 1.25239 1.18202 0.82947 0.78856 0.85433 1.90826 1.59261 1.57784 1.35947 1.21508 0.92766 0.95892 0.92589 1.23181 0.96301 0.98297 1.02683 1.23986 1.00375 0.90197 0.85886 1.68203 1.05018 1.19187 1.29275 1.23596 0.89927 0.88124 0.93353 1.20837 0.97040 0.98570 0.88313 1.22440 1.02239 0.93078 0.97274 1.22479 1.00081 0.99015 0.93876 1.22317 0.99674 0.95349 0.98210 1.22114 1.00234 0.98314 0.93827 1.68166 1.37382 1.16057 1.00139 1.42990 1.79086 1.11688 1.05913 1.19009 1.29951 0.98402 0.87101 0.92041 1.25367 1.02895 1.01762 0.95429 1.69862 1.52926 1.40667 0.99961 0.85543 0.78472 0.81541 0.76964 1.22108 1.22202 1.17960 0.93201 0.95119 0.90296 0.87075 0.90933 0.91569 0.94301 0.89912 0.74204 0.81873 0.76726 0.87694 0.91580 0.90933 0.90304 0.90661 0.90406 0.91868 0.90058 0.93183 0.80490 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.86 9.44 71.98 0.68 -4.18 16 2 C 0.17 5.85 2.77 44.99 0.12 5.97 16 3 H 0.05 1.93 6.34 -2.39 -0.02 1.91 16 4 C -0.12 -3.07 4.36 30.60 0.13 -2.94 16 5 C 0.14 4.29 2.59 44.99 0.12 4.41 16 6 H 0.06 2.27 7.05 -2.39 -0.02 2.25 16 7 C -0.15 -4.40 9.21 71.98 0.66 -3.74 16 8 N -0.69 -17.98 5.10 -444.83 -2.27 -20.24 16 9 C 0.56 16.89 7.74 86.97 0.67 17.56 16 10 O -0.56 -21.40 16.13 -3.62 -0.06 -21.46 16 11 C 0.12 2.92 6.79 41.99 0.29 3.20 16 12 C -0.18 -3.63 9.72 22.71 0.22 -3.41 16 13 C 0.16 2.44 11.31 84.76 0.96 3.40 16 14 N -0.50 -8.88 9.39 -187.89 -1.76 -10.64 16 15 C 0.32 5.98 6.15 138.78 0.85 6.83 16 16 C -0.03 -0.38 3.29 -10.81 -0.04 -0.41 16 17 C -0.11 -1.32 6.32 31.70 0.20 -1.12 16 18 C -0.12 -0.99 6.91 31.91 0.22 -0.77 16 19 C -0.12 -1.10 6.83 31.67 0.22 -0.88 16 20 C -0.11 -1.26 6.39 31.32 0.20 -1.06 16 21 N -0.50 -10.87 9.60 -177.07 -1.70 -12.57 16 22 N -0.75 -34.52 4.31 -322.94 -1.39 -35.91 16 23 C -0.21 -12.13 10.38 84.03 0.87 -11.26 16 24 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 25 C -0.06 -3.82 5.50 84.86 0.47 -3.36 16 26 N -0.98 -64.34 13.97 21.65 0.30 -64.03 16 27 Si 0.95 48.29 28.00 68.60 1.92 50.21 16 28 H -0.29 -15.42 7.11 99.48 0.71 -14.71 16 29 H -0.30 -15.10 7.11 99.48 0.71 -14.40 16 30 H -0.25 -11.74 6.16 99.48 0.61 -11.12 16 31 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 2.09 6.49 -2.39 -0.02 2.08 16 37 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.42 8.69 7.99 -92.71 -0.74 7.95 16 40 H 0.16 3.12 7.75 -2.91 -0.02 3.10 16 41 H 0.22 1.36 8.06 -2.91 -0.02 1.34 16 42 H 0.10 1.34 8.11 -2.39 -0.02 1.32 16 43 H 0.07 0.95 7.27 -2.39 -0.02 0.94 16 44 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 50 H 0.05 0.74 7.62 -2.39 -0.02 0.73 16 51 H 0.36 16.56 5.46 -92.71 -0.51 16.05 16 52 H 0.26 16.03 8.31 -92.70 -0.77 15.26 16 Total: -1.00 -76.28 416.94 1.47 -74.80 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: -0.42 Total: 31.59 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 6.85 Total: 8.25 kcal Atomic # 7 Polarization: -136.58 SS G_CDS: -6.82 Total: -143.40 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.06 Total: -21.46 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 1.92 Total: 50.21 kcal Total: -76.28 1.47 -74.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135821507.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.158 kcal (2) G-P(sol) polarization free energy of solvation -76.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds